FastQCFastQC Report
Mon 18 Apr 2022
SRR6723884_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6723884_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5516577
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATTAATTTCATCTGAAGACGTCCTCCACTCATGAGCAGTCCCCTCCC535390.9705112427507131No Hit
TCGAGTTTCAGAACGATCGCGGGGGCCGTGCACTCTTCCAGGATGTGCAG143430.25999818365627814No Hit
CTGTCGACCGTGCGCTTCTTCTAGCCCAGTGATCAGTCATGGCATGCCCT138730.2514784077155091No Hit
TTTGCTGTTCGTGACATGAGGCAGACAGTTGCTGTGGGTGTCATCAAAGC105440.1911330159988703No Hit
ATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTATTCCCAT105120.19055294614758392No Hit
ATAATTGCTCTCCCCTCTCTACGCATTCTATATATAATAGACGAAATCAA95020.17224449146635676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)