FastQCFastQC Report
Mon 18 Apr 2022
SRR6723885_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6723885_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5453907
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATTAATTTCATCTGAAGACGTCCTCCACTCATGAGCAGTCCCCTCCC543130.9958548981491616No Hit
CTGTCGACCGTGCGCTTCTTCTAGCCCAGTGATCAGTCATGGCATGCCCT164300.3012519282048631No Hit
ATAATTGCTCTCCCCTCTCTACGCATTCTATATATAATAGACGAAATCAA119970.21997074757600377No Hit
TCGAGTTTCAGAACGATCGCGGGGGCCGTGCACTCTTCCAGGATGTGCAG117160.21481847783616403No Hit
TTTGCTGTTCGTGACATGAGGCAGACAGTTGCTGTGGGTGTCATCAAAGC97890.17948600883733443No Hit
ATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTATTCCCAT97670.17908262828830782No Hit
TGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGAAAGACTAATC59280.10869272248316666No Hit
AGAGGCACCATTGAAATTCTGAGTGATGTGCAGCTGATAAAGACTGGAGA55660.10205527890372902No Hit
TGATGGATGATCTGGACCGTAACAAGGATCAGGAAGTAAACTTCCAGGAG55360.10150521451869274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)