FastQCFastQC Report
Mon 18 Apr 2022
SRR6723885_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6723885_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5453907
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTAGATCCACAAATTTCAGAGCATTGGCCATAGAATAACCCTGGTCGG128470.23555590515203137No Hit
GGCCATAGAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGT71720.1315020589826706No Hit
CGGATTGGAAGTTCTATTGGCAGAACGACTCGGTTATCAACTTCTAGCAG60280.11052627043328755No Hit
CATTGTAGATCAAAGCCAAGGCCCCCAGGAAGGCGACATACTCCTGGAAG58750.10772094206960257No Hit
CCTGATCCTTGTTACGGTCCAGATCATCCATCAGCCTTGCAATTTCAGCA55200.10121184684667339No Hit
GGAAGGCGACATACTCCTGGAAGTTTACTTCCTGATCCTTGTTACGGTCC54970.10079013081814558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)