[2024-07-23 12:59:06,792] multiqc [DEBUG ] This is MultiQC v1.11 [2024-07-23 12:59:06,792] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-07-23 12:59:06,792] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-07-23 12:59:06,793] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-23 12:59:06,793] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-07-23 12:59:06,794] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-07-23 12:59:06,794] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/06_CollectMetrics/ [2024-07-23 12:59:07,227] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-23 12:59:07,227] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/06_CollectMetrics/ [2024-07-23 12:59:07,227] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/14_final_summary/G174_multiqc_report [2024-07-23 12:59:07,227] multiqc [DEBUG ] Template : default [2024-07-23 12:59:07,227] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-07-23 12:59:07,228] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-07-23 12:59:07,228] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpuhciuq3r [2024-07-23 12:59:07,310] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES [2024-07-23 12:59:07,310] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/03_FASTQC [2024-07-23 12:59:07,310] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/06_CollectMetrics [2024-07-23 12:59:07,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M8_CKDL200148791-1a-AK5007-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:07,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M8_CKDL200148791-1a-AK5007-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:07,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,486] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,486] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,486] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,487] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,487] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,487] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:07,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,409] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:08,430] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M8_featureCounts.out [2024-07-23 12:59:09,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M10_CKDL200148791-1a-AK5007-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:09,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M10_CKDL200148791-1a-AK5007-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:09,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:09,468] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,370] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:10,390] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M10_featureCounts.out [2024-07-23 12:59:11,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M11_CKDL200148791-1a-AK5007-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:11,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M11_CKDL200148791-1a-AK5007-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:11,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,403] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,404] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:11,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,350] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:12,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M11_featureCounts.out [2024-07-23 12:59:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M1_CKDL200148791-1a-AK5010-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M1_CKDL200148791-1a-AK5010-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:13,402] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,410] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:13,429] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,308] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:14,328] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M1_featureCounts.out [2024-07-23 12:59:15,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M2_CKDL200148791-1a-AK5010-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:15,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M2_CKDL200148791-1a-AK5010-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:15,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,310] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,315] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:15,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,233] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:16,254] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M2_featureCounts.out [2024-07-23 12:59:17,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M12_CKDL200148791-1a-AK5007-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:17,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M12_CKDL200148791-1a-AK5007-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:17,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,243] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,247] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,247] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,248] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,248] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,248] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,248] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:17,268] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,127] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,127] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,132] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:18,153] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M12_featureCounts.out [2024-07-23 12:59:19,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M3_CKDL200148791-1a-AK5010-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:19,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M3_CKDL200148791-1a-AK5010-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:19,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,147] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:19,168] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,042] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,063] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M3_featureCounts.out [2024-07-23 12:59:20,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M13_CKDL200148791-1a-AK5007-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:20,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M13_CKDL200148791-1a-AK5007-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:21,026] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,034] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,034] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,034] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,034] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,034] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,945] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,948] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,948] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:21,972] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M13_featureCounts.out [2024-07-23 12:59:22,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M9_CKDL200148791-1a-AK5007-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:22,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M9_CKDL200148791-1a-AK5007-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:22,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,979] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,979] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,984] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,984] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,984] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,985] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:22,985] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,006] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:23,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M9_featureCounts.out [2024-07-23 12:59:24,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M4_CKDL200148791-1a-AK5010-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:24,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M4_CKDL200148791-1a-AK5010-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:24,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,894] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:24,920] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:25,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M4_featureCounts.out [2024-07-23 12:59:26,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M5_CKDL200148791-1a-AK5010-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:26,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M5_CKDL200148791-1a-AK5010-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:26,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:26,803] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,686] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:27,707] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M5_featureCounts.out [2024-07-23 12:59:28,579] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M6_CKDL200148791-1a-AK5010-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:28,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M6_CKDL200148791-1a-AK5010-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:28,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,697] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:28,715] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,579] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,579] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,583] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,584] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:29,604] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M6_featureCounts.out [2024-07-23 12:59:30,457] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M7_CKDL200148791-1a-AK5010-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:59:30,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G174_M7_CKDL200148791-1a-AK5010-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:59:30,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,560] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,560] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,561] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,561] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:30,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,442] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,447] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:31,467] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G174_M7_featureCounts.out [2024-07-23 12:59:32,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:59:32,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:59:32,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:59:32,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:59:32,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:59:32,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:59:32,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:59:32,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:59:32,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:59:32,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:59:32,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 12:59:32,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 12:59:32,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,470] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,470] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:59:32,506] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:59:32,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:59:32,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:59:32,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:59:32,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:59:32,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:59:32,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:59:32,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:59:32,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:59:32,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:59:32,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:32,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:59:33,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:59:33,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:59:33,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:59:33,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:59:33,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:59:33,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:59:33,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:59:33,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:59:33,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:59:33,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:59:33,815] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 12:59:33,816] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 12:59:33,818] multiqc [DEBUG ] No samples found: custom_content [2024-07-23 12:59:33,822] multiqc [DEBUG ] No samples found: ccs [2024-07-23 12:59:33,827] multiqc [DEBUG ] No samples found: ngsderive [2024-07-23 12:59:33,831] multiqc [DEBUG ] No samples found: purple [2024-07-23 12:59:33,836] multiqc [DEBUG ] No samples found: conpair [2024-07-23 12:59:33,840] multiqc [DEBUG ] No samples found: lima [2024-07-23 12:59:33,847] multiqc [DEBUG ] No samples found: peddy [2024-07-23 12:59:33,853] multiqc [DEBUG ] No samples found: somalier [2024-07-23 12:59:33,858] multiqc [DEBUG ] No samples found: methylQA [2024-07-23 12:59:33,869] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-07-23 12:59:33,869] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-07-23 12:59:33,869] multiqc [DEBUG ] No samples found: mosdepth [2024-07-23 12:59:33,875] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-23 12:59:33,879] multiqc [DEBUG ] No samples found: qualimap [2024-07-23 12:59:33,884] multiqc [DEBUG ] No samples found: preseq [2024-07-23 12:59:33,889] multiqc [DEBUG ] No samples found: quast [2024-07-23 12:59:33,895] multiqc [DEBUG ] No samples found: qorts [2024-07-23 12:59:33,901] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-23 12:59:33,906] multiqc [DEBUG ] No samples found: rockhopper [2024-07-23 12:59:33,912] multiqc [DEBUG ] No samples found: rsem [2024-07-23 12:59:33,938] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-07-23 12:59:33,947] multiqc [DEBUG ] No samples found: busco [2024-07-23 12:59:33,953] multiqc [DEBUG ] No samples found: bustools [2024-07-23 12:59:33,958] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-23 12:59:33,963] multiqc [DEBUG ] No samples found: gffcompare [2024-07-23 12:59:33,967] multiqc [DEBUG ] No samples found: disambiguate [2024-07-23 12:59:33,972] multiqc [DEBUG ] No samples found: supernova [2024-07-23 12:59:33,987] multiqc [DEBUG ] No samples found: deeptools [2024-07-23 12:59:33,993] multiqc [DEBUG ] No samples found: sargasso [2024-07-23 12:59:33,998] multiqc [DEBUG ] No samples found: verifybamid [2024-07-23 12:59:34,003] multiqc [DEBUG ] No samples found: mirtrace [2024-07-23 12:59:34,008] multiqc [DEBUG ] No samples found: happy [2024-07-23 12:59:34,013] multiqc [DEBUG ] No samples found: mirtop [2024-07-23 12:59:34,019] multiqc [DEBUG ] No samples found: sambamba [2024-07-23 12:59:34,025] multiqc [DEBUG ] No samples found: homer [2024-07-23 12:59:34,030] multiqc [DEBUG ] No samples found: hops [2024-07-23 12:59:34,036] multiqc [DEBUG ] No samples found: macs2 [2024-07-23 12:59:34,043] multiqc [DEBUG ] No samples found: theta2 [2024-07-23 12:59:34,048] multiqc [DEBUG ] No samples found: snpeff [2024-07-23 12:59:34,055] multiqc [DEBUG ] No samples found: gatk [2024-07-23 12:59:34,060] multiqc [DEBUG ] No samples found: htseq [2024-07-23 12:59:34,067] multiqc [DEBUG ] No samples found: bcftools [2024-07-23 12:59:34,077] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M8_sorted [2024-07-23 12:59:34,079] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M10_sorted [2024-07-23 12:59:34,080] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M11_sorted [2024-07-23 12:59:34,081] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M1_sorted [2024-07-23 12:59:34,082] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M2_sorted [2024-07-23 12:59:34,082] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M12_sorted [2024-07-23 12:59:34,083] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M3_sorted [2024-07-23 12:59:34,084] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M13_sorted [2024-07-23 12:59:34,084] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M9_sorted [2024-07-23 12:59:34,085] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M4_sorted [2024-07-23 12:59:34,086] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M5_sorted [2024-07-23 12:59:34,087] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M6_sorted [2024-07-23 12:59:34,088] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G174_M7_sorted [2024-07-23 12:59:34,088] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-07-23 12:59:34,102] multiqc [DEBUG ] No samples found: fgbio [2024-07-23 12:59:34,119] multiqc [DEBUG ] No samples found: dragen [2024-07-23 12:59:34,125] multiqc [DEBUG ] No samples found: dedup [2024-07-23 12:59:34,130] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-23 12:59:34,159] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-23 12:59:34,166] multiqc [DEBUG ] No samples found: jcvi [2024-07-23 12:59:34,172] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-23 12:59:34,176] multiqc [DEBUG ] No samples found: picard [2024-07-23 12:59:34,181] multiqc [DEBUG ] No samples found: vep [2024-07-23 12:59:34,188] multiqc [DEBUG ] No samples found: sentieon [2024-07-23 12:59:34,193] multiqc [DEBUG ] No samples found: prokka [2024-07-23 12:59:34,200] multiqc [DEBUG ] No samples found: qc3C [2024-07-23 12:59:34,206] multiqc [DEBUG ] No samples found: nanostat [2024-07-23 12:59:34,211] multiqc [DEBUG ] No samples found: samblaster [2024-07-23 12:59:34,235] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-07-23 12:59:34,240] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-23 12:59:34,245] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-07-23 12:59:34,250] multiqc [DEBUG ] No samples found: bamtools [2024-07-23 12:59:34,255] multiqc [DEBUG ] No samples found: jellyfish [2024-07-23 12:59:34,263] multiqc [DEBUG ] No samples found: vcftools [2024-07-23 12:59:34,271] multiqc [DEBUG ] No samples found: longranger [2024-07-23 12:59:34,276] multiqc [DEBUG ] No samples found: stacks [2024-07-23 12:59:34,281] multiqc [DEBUG ] No samples found: varscan2 [2024-07-23 12:59:34,286] multiqc [DEBUG ] No samples found: snippy [2024-07-23 12:59:34,302] multiqc [DEBUG ] No samples found: bbmap [2024-07-23 12:59:34,308] multiqc [DEBUG ] No samples found: bismark [2024-07-23 12:59:34,315] multiqc [DEBUG ] No samples found: biscuit [2024-07-23 12:59:34,321] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-23 12:59:34,326] multiqc [DEBUG ] No samples found: hicup [2024-07-23 12:59:34,331] multiqc [DEBUG ] No samples found: hicpro [2024-07-23 12:59:34,335] multiqc [DEBUG ] No samples found: salmon [2024-07-23 12:59:34,340] multiqc [DEBUG ] No samples found: kallisto [2024-07-23 12:59:34,345] multiqc [DEBUG ] No samples found: slamdunk [2024-07-23 12:59:34,361] multiqc.modules.star.star [INFO ] Found 13 reports [2024-07-23 12:59:34,366] multiqc [DEBUG ] No samples found: hisat2 [2024-07-23 12:59:34,371] multiqc [DEBUG ] No samples found: tophat [2024-07-23 12:59:34,376] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-23 12:59:34,381] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-23 12:59:34,385] multiqc [DEBUG ] No samples found: snpsplit [2024-07-23 12:59:34,392] multiqc [DEBUG ] No samples found: odgi [2024-07-23 12:59:34,398] multiqc [DEBUG ] No samples found: pangolin [2024-07-23 12:59:34,403] multiqc [DEBUG ] No samples found: kat [2024-07-23 12:59:34,408] multiqc [DEBUG ] No samples found: leehom [2024-07-23 12:59:34,413] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-23 12:59:34,417] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-23 12:59:34,421] multiqc [DEBUG ] No samples found: cutadapt [2024-07-23 12:59:34,427] multiqc [DEBUG ] No samples found: flexbar [2024-07-23 12:59:34,432] multiqc [DEBUG ] No samples found: kaiju [2024-07-23 12:59:34,437] multiqc [DEBUG ] No samples found: kraken [2024-07-23 12:59:34,442] multiqc [DEBUG ] No samples found: malt [2024-07-23 12:59:34,446] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-23 12:59:34,453] multiqc [DEBUG ] No samples found: sickle [2024-07-23 12:59:34,458] multiqc [DEBUG ] No samples found: skewer [2024-07-23 12:59:34,463] multiqc [DEBUG ] No samples found: sortmerna [2024-07-23 12:59:34,468] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-23 12:59:34,473] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-23 12:59:34,478] multiqc [DEBUG ] No samples found: afterqc [2024-07-23 12:59:34,483] multiqc [DEBUG ] No samples found: fastp [2024-07-23 12:59:34,487] multiqc [DEBUG ] No samples found: fastqc [2024-07-23 12:59:34,492] multiqc [DEBUG ] No samples found: pychopper [2024-07-23 12:59:34,497] multiqc [DEBUG ] No samples found: pycoqc [2024-07-23 12:59:34,503] multiqc [DEBUG ] No samples found: minionqc [2024-07-23 12:59:34,507] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-23 12:59:34,512] multiqc [DEBUG ] No samples found: clusterflow [2024-07-23 12:59:34,517] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-23 12:59:34,522] multiqc [DEBUG ] No samples found: bclconvert [2024-07-23 12:59:34,527] multiqc [DEBUG ] No samples found: interop [2024-07-23 12:59:34,534] multiqc [DEBUG ] No samples found: ivar [2024-07-23 12:59:34,540] multiqc [DEBUG ] No samples found: flash [2024-07-23 12:59:34,545] multiqc [DEBUG ] No samples found: seqyclean [2024-07-23 12:59:34,551] multiqc [DEBUG ] No samples found: optitype [2024-07-23 12:59:34,586] multiqc [INFO ] Compressing plot data [2024-07-23 12:59:34,622] multiqc [INFO ] Report : multiqc_report.html [2024-07-23 12:59:34,622] multiqc [INFO ] Data : multiqc_data [2024-07-23 12:59:34,622] multiqc [DEBUG ] Moving data file from '/scratch/tmpuhciuq3r/multiqc_data' to '/projectnb/wax-dk/max/G174_G178_2024/G174/Scripts/14_final_summary/G174_multiqc_report/multiqc_data' [2024-07-23 12:59:34,721] multiqc [INFO ] MultiQC complete