Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G174_M10_statistics_for_all_accepted_reads 49382424 0 4357844 0 0 0 0 0 49382424 0 100.0 nan 45024580 0 22512290 0 22512290 0 45024580 0 100.0 nan 45024580 0 0 0 0.0 nan 0 0 0 0 49382424 G174_M10_statistics_for_primary_reads 45024580 0 0 0 0 0 0 0 45024580 0 100.0 nan 45024580 0 22512290 0 22512290 0 45024580 0 100.0 nan 45024580 0 0 0 0.0 nan 0 0 0 0 45024580 G174_M10_statistics_for_primary_unique_reads 42368242 0 0 0 0 0 0 0 42368242 0 100.0 nan 42368242 0 21184121 0 21184121 0 42368242 0 100.0 nan 42368242 0 0 0 0.0 nan 0 0 0 0 42368242 G174_M11_statistics_for_all_accepted_reads 60688154 0 5199176 0 0 0 0 0 60688154 0 100.0 nan 55488978 0 27744489 0 27744489 0 55488978 0 100.0 nan 55488978 0 0 0 0.0 nan 0 0 0 0 60688154 G174_M11_statistics_for_primary_reads 55488978 0 0 0 0 0 0 0 55488978 0 100.0 nan 55488978 0 27744489 0 27744489 0 55488978 0 100.0 nan 55488978 0 0 0 0.0 nan 0 0 0 0 55488978 G174_M11_statistics_for_primary_unique_reads 52343722 0 0 0 0 0 0 0 52343722 0 100.0 nan 52343722 0 26171861 0 26171861 0 52343722 0 100.0 nan 52343722 0 0 0 0.0 nan 0 0 0 0 52343722 G174_M12_statistics_for_all_accepted_reads 44503712 0 3894980 0 0 0 0 0 44503712 0 100.0 nan 40608732 0 20304366 0 20304366 0 40608732 0 100.0 nan 40608732 0 0 0 0.0 nan 0 0 0 0 44503712 G174_M12_statistics_for_primary_reads 40608732 0 0 0 0 0 0 0 40608732 0 100.0 nan 40608732 0 20304366 0 20304366 0 40608732 0 100.0 nan 40608732 0 0 0 0.0 nan 0 0 0 0 40608732 G174_M12_statistics_for_primary_unique_reads 38410194 0 0 0 0 0 0 0 38410194 0 100.0 nan 38410194 0 19205097 0 19205097 0 38410194 0 100.0 nan 38410194 0 0 0 0.0 nan 0 0 0 0 38410194 G174_M13_statistics_for_all_accepted_reads 42228236 0 4380984 0 0 0 0 0 42228236 0 100.0 nan 37847252 0 18923626 0 18923626 0 37847252 0 100.0 nan 37847252 0 0 0 0.0 nan 0 0 0 0 42228236 G174_M13_statistics_for_primary_reads 37847252 0 0 0 0 0 0 0 37847252 0 100.0 nan 37847252 0 18923626 0 18923626 0 37847252 0 100.0 nan 37847252 0 0 0 0.0 nan 0 0 0 0 37847252 G174_M13_statistics_for_primary_unique_reads 35377810 0 0 0 0 0 0 0 35377810 0 100.0 nan 35377810 0 17688905 0 17688905 0 35377810 0 100.0 nan 35377810 0 0 0 0.0 nan 0 0 0 0 35377810 G174_M1_statistics_for_all_accepted_reads 31578288 0 4206766 0 0 0 0 0 31578288 0 100.0 nan 27371522 0 13685761 0 13685761 0 27371522 0 100.0 nan 27371522 0 0 0 0.0 nan 0 0 0 0 31578288 G174_M1_statistics_for_primary_reads 27371522 0 0 0 0 0 0 0 27371522 0 100.0 nan 27371522 0 13685761 0 13685761 0 27371522 0 100.0 nan 27371522 0 0 0 0.0 nan 0 0 0 0 27371522 G174_M1_statistics_for_primary_unique_reads 25418894 0 0 0 0 0 0 0 25418894 0 100.0 nan 25418894 0 12709447 0 12709447 0 25418894 0 100.0 nan 25418894 0 0 0 0.0 nan 0 0 0 0 25418894 G174_M2_statistics_for_all_accepted_reads 51072550 0 5678374 0 0 0 0 0 51072550 0 100.0 nan 45394176 0 22697088 0 22697088 0 45394176 0 100.0 nan 45394176 0 0 0 0.0 nan 0 0 0 0 51072550 G174_M2_statistics_for_primary_reads 45394176 0 0 0 0 0 0 0 45394176 0 100.0 nan 45394176 0 22697088 0 22697088 0 45394176 0 100.0 nan 45394176 0 0 0 0.0 nan 0 0 0 0 45394176 G174_M2_statistics_for_primary_unique_reads 42564962 0 0 0 0 0 0 0 42564962 0 100.0 nan 42564962 0 21282481 0 21282481 0 42564962 0 100.0 nan 42564962 0 0 0 0.0 nan 0 0 0 0 42564962 G174_M3_statistics_for_all_accepted_reads 47552944 0 4814060 0 0 0 0 0 47552944 0 100.0 nan 42738884 0 21369442 0 21369442 0 42738884 0 100.0 nan 42738884 0 0 0 0.0 nan 0 0 0 0 47552944 G174_M3_statistics_for_primary_reads 42738884 0 0 0 0 0 0 0 42738884 0 100.0 nan 42738884 0 21369442 0 21369442 0 42738884 0 100.0 nan 42738884 0 0 0 0.0 nan 0 0 0 0 42738884 G174_M3_statistics_for_primary_unique_reads 40222736 0 0 0 0 0 0 0 40222736 0 100.0 nan 40222736 0 20111368 0 20111368 0 40222736 0 100.0 nan 40222736 0 0 0 0.0 nan 0 0 0 0 40222736 G174_M4_statistics_for_all_accepted_reads 27340662 0 3995464 0 0 0 0 0 27340662 0 100.0 nan 23345198 0 11672599 0 11672599 0 23345198 0 100.0 nan 23345198 0 0 0 0.0 nan 0 0 0 0 27340662 G174_M4_statistics_for_primary_reads 23345198 0 0 0 0 0 0 0 23345198 0 100.0 nan 23345198 0 11672599 0 11672599 0 23345198 0 100.0 nan 23345198 0 0 0 0.0 nan 0 0 0 0 23345198 G174_M4_statistics_for_primary_unique_reads 21450356 0 0 0 0 0 0 0 21450356 0 100.0 nan 21450356 0 10725178 0 10725178 0 21450356 0 100.0 nan 21450356 0 0 0 0.0 nan 0 0 0 0 21450356 G174_M5_statistics_for_all_accepted_reads 59871462 0 6709582 0 0 0 0 0 59871462 0 100.0 nan 53161880 0 26580940 0 26580940 0 53161880 0 100.0 nan 53161880 0 0 0 0.0 nan 0 0 0 0 59871462 G174_M5_statistics_for_primary_reads 53161880 0 0 0 0 0 0 0 53161880 0 100.0 nan 53161880 0 26580940 0 26580940 0 53161880 0 100.0 nan 53161880 0 0 0 0.0 nan 0 0 0 0 53161880 G174_M5_statistics_for_primary_unique_reads 49740078 0 0 0 0 0 0 0 49740078 0 100.0 nan 49740078 0 24870039 0 24870039 0 49740078 0 100.0 nan 49740078 0 0 0 0.0 nan 0 0 0 0 49740078 G174_M6_statistics_for_all_accepted_reads 38447050 0 4842088 0 0 0 0 0 38447050 0 100.0 nan 33604962 0 16802481 0 16802481 0 33604962 0 100.0 nan 33604962 0 0 0 0.0 nan 0 0 0 0 38447050 G174_M6_statistics_for_primary_reads 33604962 0 0 0 0 0 0 0 33604962 0 100.0 nan 33604962 0 16802481 0 16802481 0 33604962 0 100.0 nan 33604962 0 0 0 0.0 nan 0 0 0 0 33604962 G174_M6_statistics_for_primary_unique_reads 31141202 0 0 0 0 0 0 0 31141202 0 100.0 nan 31141202 0 15570601 0 15570601 0 31141202 0 100.0 nan 31141202 0 0 0 0.0 nan 0 0 0 0 31141202 G174_M7_statistics_for_all_accepted_reads 54141286 0 4644748 0 0 0 0 0 54141286 0 100.0 nan 49496538 0 24748269 0 24748269 0 49496538 0 100.0 nan 49496538 0 0 0 0.0 nan 0 0 0 0 54141286 G174_M7_statistics_for_primary_reads 49496538 0 0 0 0 0 0 0 49496538 0 100.0 nan 49496538 0 24748269 0 24748269 0 49496538 0 100.0 nan 49496538 0 0 0 0.0 nan 0 0 0 0 49496538 G174_M7_statistics_for_primary_unique_reads 46847020 0 0 0 0 0 0 0 46847020 0 100.0 nan 46847020 0 23423510 0 23423510 0 46847020 0 100.0 nan 46847020 0 0 0 0.0 nan 0 0 0 0 46847020 G174_M8_statistics_for_all_accepted_reads 53541876 0 4218722 0 0 0 0 0 53541876 0 100.0 nan 49323154 0 24661577 0 24661577 0 49323154 0 100.0 nan 49323154 0 0 0 0.0 nan 0 0 0 0 53541876 G174_M8_statistics_for_primary_reads 49323154 0 0 0 0 0 0 0 49323154 0 100.0 nan 49323154 0 24661577 0 24661577 0 49323154 0 100.0 nan 49323154 0 0 0 0.0 nan 0 0 0 0 49323154 G174_M8_statistics_for_primary_unique_reads 46826628 0 0 0 0 0 0 0 46826628 0 100.0 nan 46826628 0 23413314 0 23413314 0 46826628 0 100.0 nan 46826628 0 0 0 0.0 nan 0 0 0 0 46826628 G174_M9_statistics_for_all_accepted_reads 26134488 0 3381116 0 0 0 0 0 26134488 0 100.0 nan 22753372 0 11376686 0 11376686 0 22753372 0 100.0 nan 22753372 0 0 0 0.0 nan 0 0 0 0 26134488 G174_M9_statistics_for_primary_reads 22753372 0 0 0 0 0 0 0 22753372 0 100.0 nan 22753372 0 11376686 0 11376686 0 22753372 0 100.0 nan 22753372 0 0 0 0.0 nan 0 0 0 0 22753372 G174_M9_statistics_for_primary_unique_reads 20891656 0 0 0 0 0 0 0 20891656 0 100.0 nan 20891656 0 10445828 0 10445828 0 20891656 0 100.0 nan 20891656 0 0 0 0.0 nan 0 0 0 0 20891656