Module	Section	Sample Name	Source
RSeQC	infer_experiment	G174_M8_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/Read_Strandness/G174_M8_Read_Strandness.txt
RSeQC	infer_experiment	G174_M10_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/Read_Strandness/G174_M10_Read_Strandness.txt
RSeQC	infer_experiment	G174_M11_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/Read_Strandness/G174_M11_Read_Strandness.txt
RSeQC	infer_experiment	G174_M1_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/Read_Strandness/G174_M1_Read_Strandness.txt
RSeQC	infer_experiment	G174_M2_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/Read_Strandness/G174_M2_Read_Strandness.txt
RSeQC	infer_experiment	G174_M12_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/Read_Strandness/G174_M12_Read_Strandness.txt
RSeQC	infer_experiment	G174_M3_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/Read_Strandness/G174_M3_Read_Strandness.txt
RSeQC	infer_experiment	G174_M13_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M13/Read_Strandness/G174_M13_Read_Strandness.txt
RSeQC	infer_experiment	G174_M9_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M9/Read_Strandness/G174_M9_Read_Strandness.txt
RSeQC	infer_experiment	G174_M4_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M4/Read_Strandness/G174_M4_Read_Strandness.txt
RSeQC	infer_experiment	G174_M5_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M5/Read_Strandness/G174_M5_Read_Strandness.txt
RSeQC	infer_experiment	G174_M6_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M6/Read_Strandness/G174_M6_Read_Strandness.txt
RSeQC	infer_experiment	G174_M7_Read_Strandness	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/Read_Strandness/G174_M7_Read_Strandness.txt
featureCounts	all_sections	G174_M8_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M8_featureCounts.out.summary
featureCounts	all_sections	G174_M10_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M10_featureCounts.out.summary
featureCounts	all_sections	G174_M11_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M11_featureCounts.out.summary
featureCounts	all_sections	G174_M1_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M1_featureCounts.out.summary
featureCounts	all_sections	G174_M2_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M2_featureCounts.out.summary
featureCounts	all_sections	G174_M12_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M12_featureCounts.out.summary
featureCounts	all_sections	G174_M3_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M3_featureCounts.out.summary
featureCounts	all_sections	G174_M13_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M13/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M13_featureCounts.out.summary
featureCounts	all_sections	G174_M9_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M9/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M9_featureCounts.out.summary
featureCounts	all_sections	G174_M4_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M4/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M4_featureCounts.out.summary
featureCounts	all_sections	G174_M5_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M5/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M5_featureCounts.out.summary
featureCounts	all_sections	G174_M6_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M6/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M6_featureCounts.out.summary
featureCounts	all_sections	G174_M7_sorted	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G174_M7_featureCounts.out.summary
Samtools	flagstat	G174_M8_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/aligner/G174_M8_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M8_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/aligner/G174_M8_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M8_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/aligner/G174_M8_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M10_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/aligner/G174_M10_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M10_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/aligner/G174_M10_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M10_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/aligner/G174_M10_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M11_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/aligner/G174_M11_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M11_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/aligner/G174_M11_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M11_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/aligner/G174_M11_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M1_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/aligner/G174_M1_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M1_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/aligner/G174_M1_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M1_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/aligner/G174_M1_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M2_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M2_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M2_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M12_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M12_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M12_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M3_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/aligner/G174_M3_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M3_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/aligner/G174_M3_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M3_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/aligner/G174_M3_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M13_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M13/aligner/G174_M13_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M13_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M13/aligner/G174_M13_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M13_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M13/aligner/G174_M13_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M9_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M9/aligner/G174_M9_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M9_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M9/aligner/G174_M9_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M9_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M9/aligner/G174_M9_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M4_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M4/aligner/G174_M4_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M4_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M4/aligner/G174_M4_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M4_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M4/aligner/G174_M4_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M5_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M5/aligner/G174_M5_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M5_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M5/aligner/G174_M5_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M5_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M5/aligner/G174_M5_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M6_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M6/aligner/G174_M6_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M6_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M6/aligner/G174_M6_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M6_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M6/aligner/G174_M6_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G174_M7_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/aligner/G174_M7_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G174_M7_statistics_for_primary_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/aligner/G174_M7_statistics_for_primary_reads.txt
Samtools	flagstat	G174_M7_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/aligner/G174_M7_statistics_for_primary_unique_reads.txt
STAR	SummaryLog	G174_M8_G174_M8	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/aligner/G174_M8_G174_M8_Log.final.out
STAR	SummaryLog	G174_M10_G174_M10	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/aligner/G174_M10_G174_M10_Log.final.out
STAR	SummaryLog	G174_M11_G174_M11	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/aligner/G174_M11_G174_M11_Log.final.out
STAR	SummaryLog	G174_M1_G174_M1	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/aligner/G174_M1_G174_M1_Log.final.out
STAR	SummaryLog	G174_M2_G174_M2	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_G174_M2_Log.final.out
STAR	SummaryLog	G174_M12_G174_M12	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_G174_M12_Log.final.out
STAR	SummaryLog	G174_M3_G174_M3	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/aligner/G174_M3_G174_M3_Log.final.out
STAR	SummaryLog	G174_M13_G174_M13	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M13/aligner/G174_M13_G174_M13_Log.final.out
STAR	SummaryLog	G174_M9_G174_M9	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M9/aligner/G174_M9_G174_M9_Log.final.out
STAR	SummaryLog	G174_M4_G174_M4	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M4/aligner/G174_M4_G174_M4_Log.final.out
STAR	SummaryLog	G174_M5_G174_M5	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M5/aligner/G174_M5_G174_M5_Log.final.out
STAR	SummaryLog	G174_M6_G174_M6	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M6/aligner/G174_M6_G174_M6_Log.final.out
STAR	SummaryLog	G174_M7_G174_M7	/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/aligner/G174_M7_G174_M7_Log.final.out