[2024-07-23 12:49:52,217] multiqc [DEBUG ] This is MultiQC v1.11 [2024-07-23 12:49:52,217] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-07-23 12:49:52,217] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-07-23 12:49:52,217] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-23 12:49:52,219] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-07-23 12:49:52,219] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-07-23 12:49:52,219] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G175/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/06_CollectMetrics/ [2024-07-23 12:49:53,271] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-23 12:49:53,271] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G175/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/06_CollectMetrics/ [2024-07-23 12:49:53,271] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/14_final_summary/G175_multiqc_report [2024-07-23 12:49:53,271] multiqc [DEBUG ] Template : default [2024-07-23 12:49:53,271] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-07-23 12:49:53,272] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-07-23 12:49:53,272] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp0z_lbehw [2024-07-23 12:49:53,671] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G175/SAMPLES [2024-07-23 12:49:53,671] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/03_FASTQC [2024-07-23 12:49:53,687] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/06_CollectMetrics [2024-07-23 12:49:53,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M3_CKDL200148791-1a-AK3404-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:49:53,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M3_CKDL200148791-1a-AK3404-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:49:53,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,931] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,931] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,931] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,931] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,931] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,932] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,932] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:53,952] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,852] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,852] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,852] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,852] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,852] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:54,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M3_featureCounts.out [2024-07-23 12:49:55,775] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M12_CKDL200148791-1a-7UDI239-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:49:55,775] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M12_CKDL200148791-1a-7UDI239-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:49:55,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:55,919] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,788] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,789] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,789] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,794] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:56,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M12_featureCounts.out [2024-07-23 12:49:57,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M13_CKDL200148791-1a-7UDI239-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:49:57,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M13_CKDL200148791-1a-7UDI239-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:49:57,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,799] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,799] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:57,821] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,734] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:58,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M13_featureCounts.out [2024-07-23 12:49:59,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M8_CKDL200148791-1a-AK3404-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:49:59,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M8_CKDL200148791-1a-AK3404-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:49:59,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,752] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:49:59,774] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:00,703] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M8_featureCounts.out [2024-07-23 12:50:01,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M4_CKDL200148791-1a-AK3404-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:01,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M4_CKDL200148791-1a-AK3404-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:01,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,712] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,713] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:01,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,643] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:02,671] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M4_featureCounts.out [2024-07-23 12:50:03,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M1_CKDL200148791-1a-AK5007-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:03,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M1_CKDL200148791-1a-AK5007-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:03,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,682] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,682] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,683] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,683] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,683] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:03,703] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,579] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,583] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,584] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:04,608] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M1_featureCounts.out [2024-07-23 12:50:05,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M11_CKDL200148791-1a-7UDI239-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:05,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M11_CKDL200148791-1a-7UDI239-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:05,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,597] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,597] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,598] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,598] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:05,619] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,510] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:06,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M11_featureCounts.out [2024-07-23 12:50:07,439] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M9_CKDL200148791-1a-AK3404-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:07,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M9_CKDL200148791-1a-AK3404-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:07,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,563] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,568] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,569] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:07,590] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:08,513] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M9_featureCounts.out [2024-07-23 12:50:09,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M6_CKDL200148791-1a-AK3404-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:09,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M6_CKDL200148791-1a-AK3404-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:09,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,518] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,519] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:09,538] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:10,437] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M6_featureCounts.out [2024-07-23 12:50:11,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M5_CKDL200148791-1a-AK3404-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:11,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M5_CKDL200148791-1a-AK3404-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:11,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,441] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,441] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,442] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,442] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,442] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:11,463] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,374] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,375] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,375] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,375] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:12,397] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M5_featureCounts.out [2024-07-23 12:50:13,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M2_CKDL200148791-1a-AK5007-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:13,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M2_CKDL200148791-1a-AK5007-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:13,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,426] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,431] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:13,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,381] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,381] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,381] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,381] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,382] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,382] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,382] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:14,403] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M2_featureCounts.out [2024-07-23 12:50:15,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M10_CKDL200148791-1a-AK3404-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:15,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M10_CKDL200148791-1a-AK3404-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:15,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:15,452] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,350] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,355] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:16,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M10_featureCounts.out [2024-07-23 12:50:17,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M7_CKDL200148791-1a-AK3404-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:50:17,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G175_M7_CKDL200148791-1a-AK3404-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:50:17,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,383] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,384] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:17,404] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,289] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,294] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:18,314] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G175_M7_featureCounts.out [2024-07-23 12:50:19,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:50:19,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:50:19,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:50:19,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:50:19,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:50:19,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:50:19,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:50:19,270] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:50:19,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:50:19,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:50:19,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 12:50:19,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 12:50:19,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:50:19,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:50:19,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:50:19,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:50:19,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:50:19,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:50:19,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:50:19,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:50:19,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:50:19,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:50:19,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:50:19,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,413] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,414] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,418] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,418] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,418] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,418] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,418] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,419] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,419] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,419] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:19,419] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:50:20,184] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:50:20,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:50:20,188] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:50:20,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:50:20,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:50:20,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:50:20,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:50:20,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:50:20,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:50:20,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:50:23,688] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 12:50:23,707] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 12:50:23,710] multiqc [DEBUG ] No samples found: custom_content [2024-07-23 12:50:23,720] multiqc [DEBUG ] No samples found: ccs [2024-07-23 12:50:23,749] multiqc [DEBUG ] No samples found: ngsderive [2024-07-23 12:50:23,758] multiqc [DEBUG ] No samples found: purple [2024-07-23 12:50:23,765] multiqc [DEBUG ] No samples found: conpair [2024-07-23 12:50:23,797] multiqc [DEBUG ] No samples found: lima [2024-07-23 12:50:23,831] multiqc [DEBUG ] No samples found: peddy [2024-07-23 12:50:23,868] multiqc [DEBUG ] No samples found: somalier [2024-07-23 12:50:23,900] multiqc [DEBUG ] No samples found: methylQA [2024-07-23 12:50:23,936] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-07-23 12:50:23,936] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-07-23 12:50:23,936] multiqc [DEBUG ] No samples found: mosdepth [2024-07-23 12:50:23,945] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-23 12:50:23,964] multiqc [DEBUG ] No samples found: qualimap [2024-07-23 12:50:23,999] multiqc [DEBUG ] No samples found: preseq [2024-07-23 12:50:24,022] multiqc [DEBUG ] No samples found: quast [2024-07-23 12:50:24,059] multiqc [DEBUG ] No samples found: qorts [2024-07-23 12:50:24,099] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-23 12:50:24,133] multiqc [DEBUG ] No samples found: rockhopper [2024-07-23 12:50:24,171] multiqc [DEBUG ] No samples found: rsem [2024-07-23 12:50:24,234] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-07-23 12:50:24,271] multiqc [DEBUG ] No samples found: busco [2024-07-23 12:50:24,291] multiqc [DEBUG ] No samples found: bustools [2024-07-23 12:50:24,309] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-23 12:50:24,348] multiqc [DEBUG ] No samples found: gffcompare [2024-07-23 12:50:24,358] multiqc [DEBUG ] No samples found: disambiguate [2024-07-23 12:50:24,385] multiqc [DEBUG ] No samples found: supernova [2024-07-23 12:50:24,451] multiqc [DEBUG ] No samples found: deeptools [2024-07-23 12:50:24,467] multiqc [DEBUG ] No samples found: sargasso [2024-07-23 12:50:24,490] multiqc [DEBUG ] No samples found: verifybamid [2024-07-23 12:50:24,523] multiqc [DEBUG ] No samples found: mirtrace [2024-07-23 12:50:24,533] multiqc [DEBUG ] No samples found: happy [2024-07-23 12:50:24,556] multiqc [DEBUG ] No samples found: mirtop [2024-07-23 12:50:24,602] multiqc [DEBUG ] No samples found: sambamba [2024-07-23 12:50:24,628] multiqc [DEBUG ] No samples found: homer [2024-07-23 12:50:24,655] multiqc [DEBUG ] No samples found: hops [2024-07-23 12:50:24,665] multiqc [DEBUG ] No samples found: macs2 [2024-07-23 12:50:24,674] multiqc [DEBUG ] No samples found: theta2 [2024-07-23 12:50:24,706] multiqc [DEBUG ] No samples found: snpeff [2024-07-23 12:50:24,748] multiqc [DEBUG ] No samples found: gatk [2024-07-23 12:50:24,757] multiqc [DEBUG ] No samples found: htseq [2024-07-23 12:50:24,766] multiqc [DEBUG ] No samples found: bcftools [2024-07-23 12:50:24,802] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M3_sorted [2024-07-23 12:50:24,803] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M12_sorted [2024-07-23 12:50:24,804] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M13_sorted [2024-07-23 12:50:24,806] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M8_sorted [2024-07-23 12:50:24,807] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M4_sorted [2024-07-23 12:50:24,808] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M1_sorted [2024-07-23 12:50:24,809] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M11_sorted [2024-07-23 12:50:24,810] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M9_sorted [2024-07-23 12:50:24,811] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M6_sorted [2024-07-23 12:50:24,812] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M5_sorted [2024-07-23 12:50:24,812] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M2_sorted [2024-07-23 12:50:24,813] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M10_sorted [2024-07-23 12:50:24,814] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G175_M7_sorted [2024-07-23 12:50:24,814] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-07-23 12:50:24,879] multiqc [DEBUG ] No samples found: fgbio [2024-07-23 12:50:25,002] multiqc [DEBUG ] No samples found: dragen [2024-07-23 12:50:25,030] multiqc [DEBUG ] No samples found: dedup [2024-07-23 12:50:25,063] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-23 12:50:25,322] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-23 12:50:25,340] multiqc [DEBUG ] No samples found: jcvi [2024-07-23 12:50:25,349] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-23 12:50:25,354] multiqc [DEBUG ] No samples found: picard [2024-07-23 12:50:25,383] multiqc [DEBUG ] No samples found: vep [2024-07-23 12:50:25,419] multiqc [DEBUG ] No samples found: sentieon [2024-07-23 12:50:25,453] multiqc [DEBUG ] No samples found: prokka [2024-07-23 12:50:25,501] multiqc [DEBUG ] No samples found: qc3C [2024-07-23 12:50:25,530] multiqc [DEBUG ] No samples found: nanostat [2024-07-23 12:50:25,539] multiqc [DEBUG ] No samples found: samblaster [2024-07-23 12:50:25,656] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-07-23 12:50:25,682] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-23 12:50:25,687] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-07-23 12:50:25,695] multiqc [DEBUG ] No samples found: bamtools [2024-07-23 12:50:25,701] multiqc [DEBUG ] No samples found: jellyfish [2024-07-23 12:50:25,714] multiqc [DEBUG ] No samples found: vcftools [2024-07-23 12:50:25,725] multiqc [DEBUG ] No samples found: longranger [2024-07-23 12:50:25,732] multiqc [DEBUG ] No samples found: stacks [2024-07-23 12:50:25,740] multiqc [DEBUG ] No samples found: varscan2 [2024-07-23 12:50:25,776] multiqc [DEBUG ] No samples found: snippy [2024-07-23 12:50:25,852] multiqc [DEBUG ] No samples found: bbmap [2024-07-23 12:50:25,874] multiqc [DEBUG ] No samples found: bismark [2024-07-23 12:50:25,904] multiqc [DEBUG ] No samples found: biscuit [2024-07-23 12:50:25,943] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-23 12:50:25,964] multiqc [DEBUG ] No samples found: hicup [2024-07-23 12:50:25,992] multiqc [DEBUG ] No samples found: hicpro [2024-07-23 12:50:26,001] multiqc [DEBUG ] No samples found: salmon [2024-07-23 12:50:26,043] multiqc [DEBUG ] No samples found: kallisto [2024-07-23 12:50:26,071] multiqc [DEBUG ] No samples found: slamdunk [2024-07-23 12:50:26,131] multiqc.modules.star.star [INFO ] Found 13 reports [2024-07-23 12:50:26,139] multiqc [DEBUG ] No samples found: hisat2 [2024-07-23 12:50:26,167] multiqc [DEBUG ] No samples found: tophat [2024-07-23 12:50:26,196] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-23 12:50:26,205] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-23 12:50:26,221] multiqc [DEBUG ] No samples found: snpsplit [2024-07-23 12:50:26,280] multiqc [DEBUG ] No samples found: odgi [2024-07-23 12:50:26,289] multiqc [DEBUG ] No samples found: pangolin [2024-07-23 12:50:26,297] multiqc [DEBUG ] No samples found: kat [2024-07-23 12:50:26,303] multiqc [DEBUG ] No samples found: leehom [2024-07-23 12:50:26,323] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-23 12:50:26,328] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-23 12:50:26,355] multiqc [DEBUG ] No samples found: cutadapt [2024-07-23 12:50:26,364] multiqc [DEBUG ] No samples found: flexbar [2024-07-23 12:50:26,373] multiqc [DEBUG ] No samples found: kaiju [2024-07-23 12:50:26,409] multiqc [DEBUG ] No samples found: kraken [2024-07-23 12:50:26,419] multiqc [DEBUG ] No samples found: malt [2024-07-23 12:50:26,453] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-23 12:50:26,463] multiqc [DEBUG ] No samples found: sickle [2024-07-23 12:50:26,500] multiqc [DEBUG ] No samples found: skewer [2024-07-23 12:50:26,509] multiqc [DEBUG ] No samples found: sortmerna [2024-07-23 12:50:26,517] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-23 12:50:26,538] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-23 12:50:26,559] multiqc [DEBUG ] No samples found: afterqc [2024-07-23 12:50:26,584] multiqc [DEBUG ] No samples found: fastp [2024-07-23 12:50:26,617] multiqc [DEBUG ] No samples found: fastqc [2024-07-23 12:50:26,626] multiqc [DEBUG ] No samples found: pychopper [2024-07-23 12:50:26,647] multiqc [DEBUG ] No samples found: pycoqc [2024-07-23 12:50:26,654] multiqc [DEBUG ] No samples found: minionqc [2024-07-23 12:50:26,675] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-23 12:50:26,689] multiqc [DEBUG ] No samples found: clusterflow [2024-07-23 12:50:26,719] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-23 12:50:26,759] multiqc [DEBUG ] No samples found: bclconvert [2024-07-23 12:50:26,783] multiqc [DEBUG ] No samples found: interop [2024-07-23 12:50:26,807] multiqc [DEBUG ] No samples found: ivar [2024-07-23 12:50:26,845] multiqc [DEBUG ] No samples found: flash [2024-07-23 12:50:26,857] multiqc [DEBUG ] No samples found: seqyclean [2024-07-23 12:50:26,865] multiqc [DEBUG ] No samples found: optitype [2024-07-23 12:50:26,889] multiqc [INFO ] Compressing plot data [2024-07-23 12:50:26,915] multiqc [INFO ] Report : multiqc_report.html [2024-07-23 12:50:26,915] multiqc [INFO ] Data : multiqc_data [2024-07-23 12:50:26,915] multiqc [DEBUG ] Moving data file from '/scratch/tmp0z_lbehw/multiqc_data' to '/projectnb/wax-dk/max/G174_G178_2024/G175/Scripts/14_final_summary/G175_multiqc_report/multiqc_data' [2024-07-23 12:50:27,578] multiqc [INFO ] MultiQC complete