[2024-07-23 12:55:11,401] multiqc [DEBUG ] This is MultiQC v1.11 [2024-07-23 12:55:11,402] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-07-23 12:55:11,402] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-07-23 12:55:11,402] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-23 12:55:11,403] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-07-23 12:55:11,404] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-07-23 12:55:11,404] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G176/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/06_CollectMetrics/ [2024-07-23 12:55:11,804] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-23 12:55:11,805] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G176/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/06_CollectMetrics/ [2024-07-23 12:55:11,805] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/14_final_summary/G176_multiqc_report [2024-07-23 12:55:11,805] multiqc [DEBUG ] Template : default [2024-07-23 12:55:11,805] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-07-23 12:55:11,806] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-07-23 12:55:11,806] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmps2i_01nd [2024-07-23 12:55:11,904] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G176/SAMPLES [2024-07-23 12:55:11,905] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/03_FASTQC [2024-07-23 12:55:11,905] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/06_CollectMetrics [2024-07-23 12:55:11,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M3_CKDL200148791-1a-AK7206-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:11,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M3_CKDL200148791-1a-AK7206-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:12,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,089] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,092] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:12,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,017] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,021] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,021] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,025] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,025] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,025] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,025] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,026] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,026] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,026] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,045] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M3_featureCounts.out [2024-07-23 12:55:13,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M13_CKDL200148791-1a-AK7207-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:13,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M13_CKDL200148791-1a-AK7207-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:14,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,067] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,067] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,072] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,072] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,093] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,957] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,957] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,962] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:14,982] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M13_featureCounts.out [2024-07-23 12:55:15,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M5_CKDL200148791-1a-AK7206-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:15,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M5_CKDL200148791-1a-AK7206-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:15,952] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,955] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,960] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,961] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:15,982] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:16,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M5_featureCounts.out [2024-07-23 12:55:17,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M1_CKDL200148791-1a-AK4243-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:17,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M1_CKDL200148791-1a-AK4243-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:17,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,894] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,899] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,900] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:17,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,819] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:18,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M1_featureCounts.out [2024-07-23 12:55:19,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M10_CKDL200148791-1a-AK7207-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:19,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M10_CKDL200148791-1a-AK7207-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:19,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,865] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,870] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:19,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:20,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M10_featureCounts.out [2024-07-23 12:55:21,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M7_CKDL200148791-1a-AK7206-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:21,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M7_CKDL200148791-1a-AK7206-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:21,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,765] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:21,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,678] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,678] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,678] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,679] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,679] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,679] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,679] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:22,700] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M7_featureCounts.out [2024-07-23 12:55:23,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M9_CKDL200148791-1a-AK7206-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:23,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M9_CKDL200148791-1a-AK7206-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:23,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,688] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,693] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,693] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:23,715] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,602] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:24,624] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M9_featureCounts.out [2024-07-23 12:55:25,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M11_CKDL200148791-1a-AK7207-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:25,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M11_CKDL200148791-1a-AK7207-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:25,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,634] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:25,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,542] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,560] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:26,584] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M11_featureCounts.out [2024-07-23 12:55:27,475] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M4_CKDL200148791-1a-AK7206-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:27,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M4_CKDL200148791-1a-AK7206-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:27,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,615] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,615] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,616] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,616] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,616] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,616] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:27,640] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,526] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,526] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,527] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,527] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,527] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,527] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,527] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:28,548] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M4_featureCounts.out [2024-07-23 12:55:29,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M6_CKDL200148791-1a-AK7206-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:29,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M6_CKDL200148791-1a-AK7206-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:29,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,533] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,533] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:29,554] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,459] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:30,481] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M6_featureCounts.out [2024-07-23 12:55:31,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M12_CKDL200148791-1a-AK7207-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:31,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M12_CKDL200148791-1a-AK7207-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:31,489] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:31,519] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,401] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:32,421] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M12_featureCounts.out [2024-07-23 12:55:33,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M2_CKDL200148791-1a-AK7206-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:33,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M2_CKDL200148791-1a-AK7206-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:33,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,398] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:33,419] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,299] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,302] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,302] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,307] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,308] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:34,328] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M2_featureCounts.out [2024-07-23 12:55:35,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M8_CKDL200148791-1a-AK7206-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 12:55:35,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G176_M8_CKDL200148791-1a-AK7206-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 12:55:35,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,317] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:35,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,204] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,211] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,211] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,212] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,212] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:36,232] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G176_M8_featureCounts.out [2024-07-23 12:55:37,111] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:55:37,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:55:37,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:55:37,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:55:37,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:55:37,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:55:37,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:55:37,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:55:37,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:55:37,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 12:55:37,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 12:55:37,197] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 12:55:37,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 12:55:37,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:55:37,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:55:37,262] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:55:37,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:55:37,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 12:55:37,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:55:37,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:55:37,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 12:55:37,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:55:37,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 12:55:37,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,339] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,344] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,344] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,344] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,345] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:37,345] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 12:55:38,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:55:38,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:55:38,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:55:38,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:55:38,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 12:55:38,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:55:38,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:55:38,145] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:55:38,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:55:38,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 12:55:38,600] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 12:55:38,602] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 12:55:38,604] multiqc [DEBUG ] No samples found: custom_content [2024-07-23 12:55:38,608] multiqc [DEBUG ] No samples found: ccs [2024-07-23 12:55:38,614] multiqc [DEBUG ] No samples found: ngsderive [2024-07-23 12:55:38,618] multiqc [DEBUG ] No samples found: purple [2024-07-23 12:55:38,623] multiqc [DEBUG ] No samples found: conpair [2024-07-23 12:55:38,628] multiqc [DEBUG ] No samples found: lima [2024-07-23 12:55:38,633] multiqc [DEBUG ] No samples found: peddy [2024-07-23 12:55:38,637] multiqc [DEBUG ] No samples found: somalier [2024-07-23 12:55:38,642] multiqc [DEBUG ] No samples found: methylQA [2024-07-23 12:55:38,650] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-07-23 12:55:38,650] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-07-23 12:55:38,650] multiqc [DEBUG ] No samples found: mosdepth [2024-07-23 12:55:38,657] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-23 12:55:38,662] multiqc [DEBUG ] No samples found: qualimap [2024-07-23 12:55:38,667] multiqc [DEBUG ] No samples found: preseq [2024-07-23 12:55:38,672] multiqc [DEBUG ] No samples found: quast [2024-07-23 12:55:38,678] multiqc [DEBUG ] No samples found: qorts [2024-07-23 12:55:38,683] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-23 12:55:38,688] multiqc [DEBUG ] No samples found: rockhopper [2024-07-23 12:55:38,692] multiqc [DEBUG ] No samples found: rsem [2024-07-23 12:55:38,713] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-07-23 12:55:38,721] multiqc [DEBUG ] No samples found: busco [2024-07-23 12:55:38,727] multiqc [DEBUG ] No samples found: bustools [2024-07-23 12:55:38,733] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-23 12:55:38,738] multiqc [DEBUG ] No samples found: gffcompare [2024-07-23 12:55:38,743] multiqc [DEBUG ] No samples found: disambiguate [2024-07-23 12:55:38,749] multiqc [DEBUG ] No samples found: supernova [2024-07-23 12:55:38,763] multiqc [DEBUG ] No samples found: deeptools [2024-07-23 12:55:38,771] multiqc [DEBUG ] No samples found: sargasso [2024-07-23 12:55:38,777] multiqc [DEBUG ] No samples found: verifybamid [2024-07-23 12:55:38,784] multiqc [DEBUG ] No samples found: mirtrace [2024-07-23 12:55:38,789] multiqc [DEBUG ] No samples found: happy [2024-07-23 12:55:38,794] multiqc [DEBUG ] No samples found: mirtop [2024-07-23 12:55:38,799] multiqc [DEBUG ] No samples found: sambamba [2024-07-23 12:55:38,805] multiqc [DEBUG ] No samples found: homer [2024-07-23 12:55:38,810] multiqc [DEBUG ] No samples found: hops [2024-07-23 12:55:38,815] multiqc [DEBUG ] No samples found: macs2 [2024-07-23 12:55:38,819] multiqc [DEBUG ] No samples found: theta2 [2024-07-23 12:55:38,823] multiqc [DEBUG ] No samples found: snpeff [2024-07-23 12:55:38,830] multiqc [DEBUG ] No samples found: gatk [2024-07-23 12:55:38,834] multiqc [DEBUG ] No samples found: htseq [2024-07-23 12:55:38,840] multiqc [DEBUG ] No samples found: bcftools [2024-07-23 12:55:38,845] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M3_sorted [2024-07-23 12:55:38,845] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M13_sorted [2024-07-23 12:55:38,845] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M5_sorted [2024-07-23 12:55:38,846] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M1_sorted [2024-07-23 12:55:38,846] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M10_sorted [2024-07-23 12:55:38,847] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M7_sorted [2024-07-23 12:55:38,847] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M9_sorted [2024-07-23 12:55:38,848] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M11_sorted [2024-07-23 12:55:38,848] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M4_sorted [2024-07-23 12:55:38,849] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M6_sorted [2024-07-23 12:55:38,849] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M12_sorted [2024-07-23 12:55:38,849] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M2_sorted [2024-07-23 12:55:38,850] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G176_M8_sorted [2024-07-23 12:55:38,850] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-07-23 12:55:38,861] multiqc [DEBUG ] No samples found: fgbio [2024-07-23 12:55:38,874] multiqc [DEBUG ] No samples found: dragen [2024-07-23 12:55:38,879] multiqc [DEBUG ] No samples found: dedup [2024-07-23 12:55:38,883] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-23 12:55:38,912] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-23 12:55:38,917] multiqc [DEBUG ] No samples found: jcvi [2024-07-23 12:55:38,923] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-23 12:55:38,927] multiqc [DEBUG ] No samples found: picard [2024-07-23 12:55:38,934] multiqc [DEBUG ] No samples found: vep [2024-07-23 12:55:38,942] multiqc [DEBUG ] No samples found: sentieon [2024-07-23 12:55:38,948] multiqc [DEBUG ] No samples found: prokka [2024-07-23 12:55:38,953] multiqc [DEBUG ] No samples found: qc3C [2024-07-23 12:55:38,959] multiqc [DEBUG ] No samples found: nanostat [2024-07-23 12:55:38,965] multiqc [DEBUG ] No samples found: samblaster [2024-07-23 12:55:38,996] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-07-23 12:55:39,001] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-23 12:55:39,004] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-07-23 12:55:39,010] multiqc [DEBUG ] No samples found: bamtools [2024-07-23 12:55:39,014] multiqc [DEBUG ] No samples found: jellyfish [2024-07-23 12:55:39,021] multiqc [DEBUG ] No samples found: vcftools [2024-07-23 12:55:39,027] multiqc [DEBUG ] No samples found: longranger [2024-07-23 12:55:39,031] multiqc [DEBUG ] No samples found: stacks [2024-07-23 12:55:39,037] multiqc [DEBUG ] No samples found: varscan2 [2024-07-23 12:55:39,041] multiqc [DEBUG ] No samples found: snippy [2024-07-23 12:55:39,057] multiqc [DEBUG ] No samples found: bbmap [2024-07-23 12:55:39,063] multiqc [DEBUG ] No samples found: bismark [2024-07-23 12:55:39,068] multiqc [DEBUG ] No samples found: biscuit [2024-07-23 12:55:39,074] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-23 12:55:39,079] multiqc [DEBUG ] No samples found: hicup [2024-07-23 12:55:39,084] multiqc [DEBUG ] No samples found: hicpro [2024-07-23 12:55:39,088] multiqc [DEBUG ] No samples found: salmon [2024-07-23 12:55:39,093] multiqc [DEBUG ] No samples found: kallisto [2024-07-23 12:55:39,098] multiqc [DEBUG ] No samples found: slamdunk [2024-07-23 12:55:39,112] multiqc.modules.star.star [INFO ] Found 13 reports [2024-07-23 12:55:39,117] multiqc [DEBUG ] No samples found: hisat2 [2024-07-23 12:55:39,123] multiqc [DEBUG ] No samples found: tophat [2024-07-23 12:55:39,128] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-23 12:55:39,133] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-23 12:55:39,137] multiqc [DEBUG ] No samples found: snpsplit [2024-07-23 12:55:39,142] multiqc [DEBUG ] No samples found: odgi [2024-07-23 12:55:39,147] multiqc [DEBUG ] No samples found: pangolin [2024-07-23 12:55:39,153] multiqc [DEBUG ] No samples found: kat [2024-07-23 12:55:39,159] multiqc [DEBUG ] No samples found: leehom [2024-07-23 12:55:39,164] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-23 12:55:39,169] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-23 12:55:39,174] multiqc [DEBUG ] No samples found: cutadapt [2024-07-23 12:55:39,178] multiqc [DEBUG ] No samples found: flexbar [2024-07-23 12:55:39,183] multiqc [DEBUG ] No samples found: kaiju [2024-07-23 12:55:39,188] multiqc [DEBUG ] No samples found: kraken [2024-07-23 12:55:39,193] multiqc [DEBUG ] No samples found: malt [2024-07-23 12:55:39,198] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-23 12:55:39,205] multiqc [DEBUG ] No samples found: sickle [2024-07-23 12:55:39,210] multiqc [DEBUG ] No samples found: skewer [2024-07-23 12:55:39,215] multiqc [DEBUG ] No samples found: sortmerna [2024-07-23 12:55:39,220] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-23 12:55:39,225] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-23 12:55:39,229] multiqc [DEBUG ] No samples found: afterqc [2024-07-23 12:55:39,233] multiqc [DEBUG ] No samples found: fastp [2024-07-23 12:55:39,238] multiqc [DEBUG ] No samples found: fastqc [2024-07-23 12:55:39,244] multiqc [DEBUG ] No samples found: pychopper [2024-07-23 12:55:39,250] multiqc [DEBUG ] No samples found: pycoqc [2024-07-23 12:55:39,254] multiqc [DEBUG ] No samples found: minionqc [2024-07-23 12:55:39,259] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-23 12:55:39,264] multiqc [DEBUG ] No samples found: clusterflow [2024-07-23 12:55:39,268] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-23 12:55:39,273] multiqc [DEBUG ] No samples found: bclconvert [2024-07-23 12:55:39,278] multiqc [DEBUG ] No samples found: interop [2024-07-23 12:55:39,284] multiqc [DEBUG ] No samples found: ivar [2024-07-23 12:55:39,290] multiqc [DEBUG ] No samples found: flash [2024-07-23 12:55:39,295] multiqc [DEBUG ] No samples found: seqyclean [2024-07-23 12:55:39,300] multiqc [DEBUG ] No samples found: optitype [2024-07-23 12:55:39,321] multiqc [INFO ] Compressing plot data [2024-07-23 12:55:39,346] multiqc [INFO ] Report : multiqc_report.html [2024-07-23 12:55:39,346] multiqc [INFO ] Data : multiqc_data [2024-07-23 12:55:39,346] multiqc [DEBUG ] Moving data file from '/scratch/tmps2i_01nd/multiqc_data' to '/projectnb/wax-dk/max/G174_G178_2024/G176/Scripts/14_final_summary/G176_multiqc_report/multiqc_data' [2024-07-23 12:55:39,458] multiqc [INFO ] MultiQC complete