Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G176_M10_statistics_for_all_accepted_reads 29087694 0 2242278 0 0 0 0 0 29087694 0 100.0 nan 26845416 0 13422708 0 13422708 0 26845416 0 100.0 nan 26845416 0 0 0 0.0 nan 0 0 0 0 29087694 G176_M10_statistics_for_primary_reads 26845416 0 0 0 0 0 0 0 26845416 0 100.0 nan 26845416 0 13422708 0 13422708 0 26845416 0 100.0 nan 26845416 0 0 0 0.0 nan 0 0 0 0 26845416 G176_M10_statistics_for_primary_unique_reads 25497262 0 0 0 0 0 0 0 25497262 0 100.0 nan 25497262 0 12748631 0 12748631 0 25497262 0 100.0 nan 25497262 0 0 0 0.0 nan 0 0 0 0 25497262 G176_M11_statistics_for_all_accepted_reads 34735060 0 2661790 0 0 0 0 0 34735060 0 100.0 nan 32073270 0 16036635 0 16036635 0 32073270 0 100.0 nan 32073270 0 0 0 0.0 nan 0 0 0 0 34735060 G176_M11_statistics_for_primary_reads 32073270 0 0 0 0 0 0 0 32073270 0 100.0 nan 32073270 0 16036635 0 16036635 0 32073270 0 100.0 nan 32073270 0 0 0 0.0 nan 0 0 0 0 32073270 G176_M11_statistics_for_primary_unique_reads 30410010 0 0 0 0 0 0 0 30410010 0 100.0 nan 30410010 0 15205005 0 15205005 0 30410010 0 100.0 nan 30410010 0 0 0 0.0 nan 0 0 0 0 30410010 G176_M12_statistics_for_all_accepted_reads 33615768 0 2441484 0 0 0 0 0 33615768 0 100.0 nan 31174284 0 15587142 0 15587142 0 31174284 0 100.0 nan 31174284 0 0 0 0.0 nan 0 0 0 0 33615768 G176_M12_statistics_for_primary_reads 31174284 0 0 0 0 0 0 0 31174284 0 100.0 nan 31174284 0 15587142 0 15587142 0 31174284 0 100.0 nan 31174284 0 0 0 0.0 nan 0 0 0 0 31174284 G176_M12_statistics_for_primary_unique_reads 29821284 0 0 0 0 0 0 0 29821284 0 100.0 nan 29821284 0 14910642 0 14910642 0 29821284 0 100.0 nan 29821284 0 0 0 0.0 nan 0 0 0 0 29821284 G176_M13_statistics_for_all_accepted_reads 30735024 0 2217350 0 0 0 0 0 30735024 0 100.0 nan 28517674 0 14258837 0 14258837 0 28517674 0 100.0 nan 28517674 0 0 0 0.0 nan 0 0 0 0 30735024 G176_M13_statistics_for_primary_reads 28517674 0 0 0 0 0 0 0 28517674 0 100.0 nan 28517674 0 14258837 0 14258837 0 28517674 0 100.0 nan 28517674 0 0 0 0.0 nan 0 0 0 0 28517674 G176_M13_statistics_for_primary_unique_reads 27304336 0 0 0 0 0 0 0 27304336 0 100.0 nan 27304336 0 13652168 0 13652168 0 27304336 0 100.0 nan 27304336 0 0 0 0.0 nan 0 0 0 0 27304336 G176_M1_statistics_for_all_accepted_reads 33223248 0 3427020 0 0 0 0 0 33223248 0 100.0 nan 29796228 0 14898114 0 14898114 0 29796228 0 100.0 nan 29796228 0 0 0 0.0 nan 0 0 0 0 33223248 G176_M1_statistics_for_primary_reads 29796228 0 0 0 0 0 0 0 29796228 0 100.0 nan 29796228 0 14898114 0 14898114 0 29796228 0 100.0 nan 29796228 0 0 0 0.0 nan 0 0 0 0 29796228 G176_M1_statistics_for_primary_unique_reads 28230700 0 0 0 0 0 0 0 28230700 0 100.0 nan 28230700 0 14115350 0 14115350 0 28230700 0 100.0 nan 28230700 0 0 0 0.0 nan 0 0 0 0 28230700 G176_M2_statistics_for_all_accepted_reads 35834388 0 3557938 0 0 0 0 0 35834388 0 100.0 nan 32276450 0 16138225 0 16138225 0 32276450 0 100.0 nan 32276450 0 0 0 0.0 nan 0 0 0 0 35834388 G176_M2_statistics_for_primary_reads 32276450 0 0 0 0 0 0 0 32276450 0 100.0 nan 32276450 0 16138225 0 16138225 0 32276450 0 100.0 nan 32276450 0 0 0 0.0 nan 0 0 0 0 32276450 G176_M2_statistics_for_primary_unique_reads 30603658 0 0 0 0 0 0 0 30603658 0 100.0 nan 30603658 0 15301829 0 15301829 0 30603658 0 100.0 nan 30603658 0 0 0 0.0 nan 0 0 0 0 30603658 G176_M3_statistics_for_all_accepted_reads 26745316 0 2192908 0 0 0 0 0 26745316 0 100.0 nan 24552408 0 12276204 0 12276204 0 24552408 0 100.0 nan 24552408 0 0 0 0.0 nan 0 0 0 0 26745316 G176_M3_statistics_for_primary_reads 24552408 0 0 0 0 0 0 0 24552408 0 100.0 nan 24552408 0 12276204 0 12276204 0 24552408 0 100.0 nan 24552408 0 0 0 0.0 nan 0 0 0 0 24552408 G176_M3_statistics_for_primary_unique_reads 23432306 0 0 0 0 0 0 0 23432306 0 100.0 nan 23432306 0 11716153 0 11716153 0 23432306 0 100.0 nan 23432306 0 0 0 0.0 nan 0 0 0 0 23432306 G176_M4_statistics_for_all_accepted_reads 35553958 0 3648720 0 0 0 0 0 35553958 0 100.0 nan 31905238 0 15952619 0 15952619 0 31905238 0 100.0 nan 31905238 0 0 0 0.0 nan 0 0 0 0 35553958 G176_M4_statistics_for_primary_reads 31905238 0 0 0 0 0 0 0 31905238 0 100.0 nan 31905238 0 15952619 0 15952619 0 31905238 0 100.0 nan 31905238 0 0 0 0.0 nan 0 0 0 0 31905238 G176_M4_statistics_for_primary_unique_reads 30233622 0 0 0 0 0 0 0 30233622 0 100.0 nan 30233622 0 15116811 0 15116811 0 30233622 0 100.0 nan 30233622 0 0 0 0.0 nan 0 0 0 0 30233622 G176_M5_statistics_for_all_accepted_reads 49228966 0 4625282 0 0 0 0 0 49228966 0 100.0 nan 44603684 0 22301842 0 22301842 0 44603684 0 100.0 nan 44603684 0 0 0 0.0 nan 0 0 0 0 49228966 G176_M5_statistics_for_primary_reads 44603684 0 0 0 0 0 0 0 44603684 0 100.0 nan 44603684 0 22301842 0 22301842 0 44603684 0 100.0 nan 44603684 0 0 0 0.0 nan 0 0 0 0 44603684 G176_M5_statistics_for_primary_unique_reads 42295408 0 0 0 0 0 0 0 42295408 0 100.0 nan 42295408 0 21147704 0 21147704 0 42295408 0 100.0 nan 42295408 0 0 0 0.0 nan 0 0 0 0 42295408 G176_M6_statistics_for_all_accepted_reads 27101554 0 2409650 0 0 0 0 0 27101554 0 100.0 nan 24691904 0 12345952 0 12345952 0 24691904 0 100.0 nan 24691904 0 0 0 0.0 nan 0 0 0 0 27101554 G176_M6_statistics_for_primary_reads 24691904 0 0 0 0 0 0 0 24691904 0 100.0 nan 24691904 0 12345952 0 12345952 0 24691904 0 100.0 nan 24691904 0 0 0 0.0 nan 0 0 0 0 24691904 G176_M6_statistics_for_primary_unique_reads 23473748 0 0 0 0 0 0 0 23473748 0 100.0 nan 23473748 0 11736874 0 11736874 0 23473748 0 100.0 nan 23473748 0 0 0 0.0 nan 0 0 0 0 23473748 G176_M7_statistics_for_all_accepted_reads 47588730 0 2598398 0 0 0 0 0 47588730 0 100.0 nan 44990332 0 22495166 0 22495166 0 44990332 0 100.0 nan 44990332 0 0 0 0.0 nan 0 0 0 0 47588730 G176_M7_statistics_for_primary_reads 44990332 0 0 0 0 0 0 0 44990332 0 100.0 nan 44990332 0 22495166 0 22495166 0 44990332 0 100.0 nan 44990332 0 0 0 0.0 nan 0 0 0 0 44990332 G176_M7_statistics_for_primary_unique_reads 43503792 0 0 0 0 0 0 0 43503792 0 100.0 nan 43503792 0 21751896 0 21751896 0 43503792 0 100.0 nan 43503792 0 0 0 0.0 nan 0 0 0 0 43503792 G176_M8_statistics_for_all_accepted_reads 37630380 0 2347140 0 0 0 0 0 37630380 0 100.0 nan 35283240 0 17641620 0 17641620 0 35283240 0 100.0 nan 35283240 0 0 0 0.0 nan 0 0 0 0 37630380 G176_M8_statistics_for_primary_reads 35283240 0 0 0 0 0 0 0 35283240 0 100.0 nan 35283240 0 17641620 0 17641620 0 35283240 0 100.0 nan 35283240 0 0 0 0.0 nan 0 0 0 0 35283240 G176_M8_statistics_for_primary_unique_reads 33882606 0 0 0 0 0 0 0 33882606 0 100.0 nan 33882606 0 16941303 0 16941303 0 33882606 0 100.0 nan 33882606 0 0 0 0.0 nan 0 0 0 0 33882606 G176_M9_statistics_for_all_accepted_reads 21594844 0 1762472 0 0 0 0 0 21594844 0 100.0 nan 19832372 0 9916186 0 9916186 0 19832372 0 100.0 nan 19832372 0 0 0 0.0 nan 0 0 0 0 21594844 G176_M9_statistics_for_primary_reads 19832372 0 0 0 0 0 0 0 19832372 0 100.0 nan 19832372 0 9916186 0 9916186 0 19832372 0 100.0 nan 19832372 0 0 0 0.0 nan 0 0 0 0 19832372 G176_M9_statistics_for_primary_unique_reads 18937158 0 0 0 0 0 0 0 18937158 0 100.0 nan 18937158 0 9468579 0 9468579 0 18937158 0 100.0 nan 18937158 0 0 0 0.0 nan 0 0 0 0 18937158