[2024-09-10 14:49:07,204] multiqc [DEBUG ] This is MultiQC v1.11 [2024-09-10 14:49:07,204] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-09-10 14:49:07,204] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-09-10 14:49:07,205] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-09-10 14:49:07,206] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G177REL15/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-09-10 14:49:07,206] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-09-10 14:49:07,207] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G177REL15/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177REL15/SAMPLES /projectnb/wax-dk/max/G177REL15/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G177REL15/Scripts/06_CollectMetrics/ [2024-09-10 14:49:07,755] multiqc [WARNING] MultiQC Version v1.24.1 now available! [2024-09-10 14:49:07,755] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G177REL15/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177REL15/SAMPLES /projectnb/wax-dk/max/G177REL15/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G177REL15/Scripts/06_CollectMetrics/ [2024-09-10 14:49:07,756] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G177REL15/Scripts/99_final_summary/G177REL15_multiqc_report [2024-09-10 14:49:07,756] multiqc [DEBUG ] Template : default [2024-09-10 14:49:07,756] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-09-10 14:49:07,757] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-09-10 14:49:07,757] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp77_pcon3 [2024-09-10 14:49:08,251] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177REL15/SAMPLES [2024-09-10 14:49:08,251] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177REL15/Scripts/03_FASTQC [2024-09-10 14:49:08,252] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177REL15/Scripts/06_CollectMetrics [2024-09-10 14:49:08,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:08,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:08,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M9_primary_unique.bam [2024-09-10 14:49:08,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M9_primary_unique.bam.bai [2024-09-10 14:49:08,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,539] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,539] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,539] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,540] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:08,540] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M9_SJ.out.tab [2024-09-10 14:49:10,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,220] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,220] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,221] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,221] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:10,241] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,141] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,144] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,144] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,149] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:11,169] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M9_featureCounts.out [2024-09-10 14:49:12,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:12,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:12,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,139] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:12,144] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M6_SJ.out.tab [2024-09-10 14:49:14,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M6_primary_unique.bam [2024-09-10 14:49:14,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M6_primary_unique.bam.bai [2024-09-10 14:49:14,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,203] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,208] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,208] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,209] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,209] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,209] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,209] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,209] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:14,230] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,138] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:15,158] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M6_featureCounts.out [2024-09-10 14:49:16,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:16,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:16,073] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M10_primary_unique.bam [2024-09-10 14:49:16,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M10_primary_unique.bam.bai [2024-09-10 14:49:16,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:16,137] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M10_SJ.out.tab [2024-09-10 14:49:18,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,514] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,514] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,515] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,515] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,515] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:18,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,453] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,471] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:19,496] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M10_featureCounts.out [2024-09-10 14:49:20,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:20,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:20,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M11_primary_unique.bam.bai [2024-09-10 14:49:20,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M11_primary_unique.bam [2024-09-10 14:49:20,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,496] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,501] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,501] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:20,502] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M11_SJ.out.tab [2024-09-10 14:49:22,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,580] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,580] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,580] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,580] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:22,601] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,489] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,494] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:23,514] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M11_featureCounts.out [2024-09-10 14:49:24,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:24,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:24,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M13_primary_unique.bam.bai [2024-09-10 14:49:24,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M13_primary_unique.bam [2024-09-10 14:49:24,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,538] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,538] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,538] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,538] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,538] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,539] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,539] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:24,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M13_SJ.out.tab [2024-09-10 14:49:26,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,538] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,538] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,538] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,539] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,539] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,539] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:26,560] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,484] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,489] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:27,511] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M13_featureCounts.out [2024-09-10 14:49:28,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:28,430] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:28,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M12_primary_unique.bam.bai [2024-09-10 14:49:28,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M12_primary_unique.bam [2024-09-10 14:49:28,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:28,550] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M12_SJ.out.tab [2024-09-10 14:49:30,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,559] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:30,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,502] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,502] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,506] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,506] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,507] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,507] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,507] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,507] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,507] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:31,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M12_featureCounts.out [2024-09-10 14:49:32,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:32,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:32,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M7_primary_unique.bam [2024-09-10 14:49:32,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M7_primary_unique.bam.bai [2024-09-10 14:49:32,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,562] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:32,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M7_SJ.out.tab [2024-09-10 14:49:34,764] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,772] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:34,793] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,746] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,746] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,746] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,746] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,747] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,747] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,747] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:35,770] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M7_featureCounts.out [2024-09-10 14:49:36,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:36,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:36,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M8_primary_unique.bam.bai [2024-09-10 14:49:36,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M8_primary_unique.bam [2024-09-10 14:49:36,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,784] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,789] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,790] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:36,790] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M8_SJ.out.tab [2024-09-10 14:49:38,897] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,900] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,906] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:38,928] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,852] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,852] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,852] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,852] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,852] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:39,875] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M8_featureCounts.out [2024-09-10 14:49:40,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:40,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:40,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:40,922] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M5_SJ.out.tab [2024-09-10 14:49:42,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M5_primary_unique.bam [2024-09-10 14:49:42,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M5_primary_unique.bam.bai [2024-09-10 14:49:42,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:42,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:42,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:42,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,940] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,940] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,941] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,941] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,941] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,941] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,941] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:43,960] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M5_featureCounts.out [2024-09-10 14:49:44,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:44,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:44,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M4_primary_unique.bam.bai [2024-09-10 14:49:44,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:45,006] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M4_SJ.out.tab [2024-09-10 14:49:46,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M4_primary_unique.bam [2024-09-10 14:49:46,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,902] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,902] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,902] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,903] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,903] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:46,923] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,785] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,785] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,785] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,785] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,785] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,786] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:47,807] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M4_featureCounts.out [2024-09-10 14:49:48,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:48,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:48,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M1_primary_unique.bam.bai [2024-09-10 14:49:48,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,797] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,803] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,803] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,803] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,803] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,804] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,804] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,804] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,804] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:48,804] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M1_SJ.out.tab [2024-09-10 14:49:50,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M1_primary_unique.bam [2024-09-10 14:49:50,855] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,859] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,859] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,864] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,864] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,864] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,864] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,865] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,865] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,865] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:50,896] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,831] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:51,854] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M1_featureCounts.out [2024-09-10 14:49:52,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:52,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:52,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M3_primary_unique.bam.bai [2024-09-10 14:49:52,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,856] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:52,857] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M3_SJ.out.tab [2024-09-10 14:49:54,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M3_primary_unique.bam [2024-09-10 14:49:54,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,856] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,861] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,861] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,862] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,862] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:54,885] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,808] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:55,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M3_featureCounts.out [2024-09-10 14:49:56,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-09-10 14:49:56,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-09-10 14:49:56,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M2_primary_unique.bam [2024-09-10 14:49:56,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177REL15_M2_primary_unique.bam.bai [2024-09-10 14:49:56,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,874] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:56,880] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M2_SJ.out.tab [2024-09-10 14:49:58,973] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:58,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,898] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,903] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,904] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:49:59,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177REL15_M2_featureCounts.out [2024-09-10 14:50:00,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,823] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-09-10 14:50:00,840] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-09-10 14:50:00,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-09-10 14:50:00,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-09-10 14:50:00,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-09-10 14:50:00,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-09-10 14:50:00,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-09-10 14:50:00,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-09-10 14:50:00,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-09-10 14:50:00,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-09-10 14:50:00,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-09-10 14:50:00,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-09-10 14:50:00,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-09-10 14:50:00,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-09-10 14:50:00,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-09-10 14:50:00,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-09-10 14:50:00,935] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-09-10 14:50:00,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-09-10 14:50:00,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-09-10 14:50:00,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-09-10 14:50:00,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-09-10 14:50:00,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-09-10 14:50:00,964] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-09-10 14:50:00,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,978] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,978] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:00,981] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-09-10 14:50:01,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-09-10 14:50:01,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-09-10 14:50:01,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-09-10 14:50:01,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-09-10 14:50:01,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-09-10 14:50:01,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-09-10 14:50:01,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-09-10 14:50:01,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-09-10 14:50:01,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-09-10 14:50:01,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-09-10 14:50:05,470] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-09-10 14:50:05,493] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-09-10 14:50:05,496] multiqc [DEBUG ] No samples found: custom_content [2024-09-10 14:50:05,507] multiqc [DEBUG ] No samples found: ccs [2024-09-10 14:50:05,527] multiqc [DEBUG ] No samples found: ngsderive [2024-09-10 14:50:05,537] multiqc [DEBUG ] No samples found: purple [2024-09-10 14:50:05,544] multiqc [DEBUG ] No samples found: conpair [2024-09-10 14:50:05,576] multiqc [DEBUG ] No samples found: lima [2024-09-10 14:50:05,609] multiqc [DEBUG ] No samples found: peddy [2024-09-10 14:50:05,619] multiqc [DEBUG ] No samples found: somalier [2024-09-10 14:50:05,658] multiqc [DEBUG ] No samples found: methylQA [2024-09-10 14:50:05,695] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-09-10 14:50:05,695] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-09-10 14:50:05,695] multiqc [DEBUG ] No samples found: mosdepth [2024-09-10 14:50:05,704] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-09-10 14:50:05,728] multiqc [DEBUG ] No samples found: qualimap [2024-09-10 14:50:05,766] multiqc [DEBUG ] No samples found: preseq [2024-09-10 14:50:05,788] multiqc [DEBUG ] No samples found: quast [2024-09-10 14:50:05,816] multiqc [DEBUG ] No samples found: qorts [2024-09-10 14:50:05,855] multiqc [DEBUG ] No samples found: rna_seqc [2024-09-10 14:50:05,882] multiqc [DEBUG ] No samples found: rockhopper [2024-09-10 14:50:05,910] multiqc [DEBUG ] No samples found: rsem [2024-09-10 14:50:05,969] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-09-10 14:50:05,978] multiqc [DEBUG ] No samples found: busco [2024-09-10 14:50:05,985] multiqc [DEBUG ] No samples found: bustools [2024-09-10 14:50:06,014] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-09-10 14:50:06,044] multiqc [DEBUG ] No samples found: gffcompare [2024-09-10 14:50:06,053] multiqc [DEBUG ] No samples found: disambiguate [2024-09-10 14:50:06,086] multiqc [DEBUG ] No samples found: supernova [2024-09-10 14:50:06,180] multiqc [DEBUG ] No samples found: deeptools [2024-09-10 14:50:06,204] multiqc [DEBUG ] No samples found: sargasso [2024-09-10 14:50:06,228] multiqc [DEBUG ] No samples found: verifybamid [2024-09-10 14:50:06,262] multiqc [DEBUG ] No samples found: mirtrace [2024-09-10 14:50:06,272] multiqc [DEBUG ] No samples found: happy [2024-09-10 14:50:06,279] multiqc [DEBUG ] No samples found: mirtop [2024-09-10 14:50:06,313] multiqc [DEBUG ] No samples found: sambamba [2024-09-10 14:50:06,325] multiqc [DEBUG ] No samples found: homer [2024-09-10 14:50:06,340] multiqc [DEBUG ] No samples found: hops [2024-09-10 14:50:06,348] multiqc [DEBUG ] No samples found: macs2 [2024-09-10 14:50:06,356] multiqc [DEBUG ] No samples found: theta2 [2024-09-10 14:50:06,383] multiqc [DEBUG ] No samples found: snpeff [2024-09-10 14:50:06,415] multiqc [DEBUG ] No samples found: gatk [2024-09-10 14:50:06,424] multiqc [DEBUG ] No samples found: htseq [2024-09-10 14:50:06,433] multiqc [DEBUG ] No samples found: bcftools [2024-09-10 14:50:06,472] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M9_sorted [2024-09-10 14:50:06,475] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M6_sorted [2024-09-10 14:50:06,478] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M10_sorted [2024-09-10 14:50:06,482] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M11_sorted [2024-09-10 14:50:06,485] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M13_sorted [2024-09-10 14:50:06,489] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M12_sorted [2024-09-10 14:50:06,492] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M7_sorted [2024-09-10 14:50:06,493] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M8_sorted [2024-09-10 14:50:06,494] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M5_sorted [2024-09-10 14:50:06,496] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M4_sorted [2024-09-10 14:50:06,497] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M1_sorted [2024-09-10 14:50:06,498] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M3_sorted [2024-09-10 14:50:06,498] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177REL15_M2_sorted [2024-09-10 14:50:06,499] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-09-10 14:50:06,572] multiqc [DEBUG ] No samples found: fgbio [2024-09-10 14:50:06,674] multiqc [DEBUG ] No samples found: dragen [2024-09-10 14:50:06,710] multiqc [DEBUG ] No samples found: dedup [2024-09-10 14:50:06,746] multiqc [DEBUG ] No samples found: damageprofiler [2024-09-10 14:50:06,933] multiqc [DEBUG ] No samples found: biobambam2 [2024-09-10 14:50:06,953] multiqc [DEBUG ] No samples found: jcvi [2024-09-10 14:50:06,961] multiqc [DEBUG ] No samples found: mtnucratio [2024-09-10 14:50:06,965] multiqc [DEBUG ] No samples found: picard [2024-09-10 14:50:06,988] multiqc [DEBUG ] No samples found: vep [2024-09-10 14:50:07,016] multiqc [DEBUG ] No samples found: sentieon [2024-09-10 14:50:07,027] multiqc [DEBUG ] No samples found: prokka [2024-09-10 14:50:07,054] multiqc [DEBUG ] No samples found: qc3C [2024-09-10 14:50:07,086] multiqc [DEBUG ] No samples found: nanostat [2024-09-10 14:50:07,095] multiqc [DEBUG ] No samples found: samblaster [2024-09-10 14:50:07,187] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-09-10 14:50:07,219] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-09-10 14:50:07,228] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-09-10 14:50:07,238] multiqc [DEBUG ] No samples found: bamtools [2024-09-10 14:50:07,245] multiqc [DEBUG ] No samples found: jellyfish [2024-09-10 14:50:07,256] multiqc [DEBUG ] No samples found: vcftools [2024-09-10 14:50:07,262] multiqc [DEBUG ] No samples found: longranger [2024-09-10 14:50:07,284] multiqc [DEBUG ] No samples found: stacks [2024-09-10 14:50:07,291] multiqc [DEBUG ] No samples found: varscan2 [2024-09-10 14:50:07,338] multiqc [DEBUG ] No samples found: snippy [2024-09-10 14:50:07,387] multiqc [DEBUG ] No samples found: bbmap [2024-09-10 14:50:07,416] multiqc [DEBUG ] No samples found: bismark [2024-09-10 14:50:07,450] multiqc [DEBUG ] No samples found: biscuit [2024-09-10 14:50:07,463] multiqc [DEBUG ] No samples found: hicexplorer [2024-09-10 14:50:07,505] multiqc [DEBUG ] No samples found: hicup [2024-09-10 14:50:07,543] multiqc [DEBUG ] No samples found: hicpro [2024-09-10 14:50:07,552] multiqc [DEBUG ] No samples found: salmon [2024-09-10 14:50:07,561] multiqc [DEBUG ] No samples found: kallisto [2024-09-10 14:50:07,593] multiqc [DEBUG ] No samples found: slamdunk [2024-09-10 14:50:08,974] multiqc.modules.star.star [INFO ] Found 13 reports and 13 gene count files [2024-09-10 14:50:08,981] multiqc [DEBUG ] No samples found: hisat2 [2024-09-10 14:50:09,000] multiqc [DEBUG ] No samples found: tophat [2024-09-10 14:50:09,034] multiqc [DEBUG ] No samples found: bowtie2 [2024-09-10 14:50:09,043] multiqc [DEBUG ] No samples found: bowtie1 [2024-09-10 14:50:09,069] multiqc [DEBUG ] No samples found: snpsplit [2024-09-10 14:50:09,095] multiqc [DEBUG ] No samples found: odgi [2024-09-10 14:50:09,108] multiqc [DEBUG ] No samples found: pangolin [2024-09-10 14:50:09,114] multiqc [DEBUG ] No samples found: kat [2024-09-10 14:50:09,121] multiqc [DEBUG ] No samples found: leehom [2024-09-10 14:50:09,153] multiqc [DEBUG ] No samples found: adapterRemoval [2024-09-10 14:50:09,159] multiqc [DEBUG ] No samples found: clipandmerge [2024-09-10 14:50:09,190] multiqc [DEBUG ] No samples found: cutadapt [2024-09-10 14:50:09,199] multiqc [DEBUG ] No samples found: flexbar [2024-09-10 14:50:09,206] multiqc [DEBUG ] No samples found: kaiju [2024-09-10 14:50:09,213] multiqc [DEBUG ] No samples found: kraken [2024-09-10 14:50:09,219] multiqc [DEBUG ] No samples found: malt [2024-09-10 14:50:09,251] multiqc [DEBUG ] No samples found: trimmomatic [2024-09-10 14:50:09,261] multiqc [DEBUG ] No samples found: sickle [2024-09-10 14:50:09,288] multiqc [DEBUG ] No samples found: skewer [2024-09-10 14:50:09,297] multiqc [DEBUG ] No samples found: sortmerna [2024-09-10 14:50:09,304] multiqc [DEBUG ] No samples found: biobloomtools [2024-09-10 14:50:09,333] multiqc [DEBUG ] No samples found: fastq_screen [2024-09-10 14:50:09,368] multiqc [DEBUG ] No samples found: afterqc [2024-09-10 14:50:09,408] multiqc [DEBUG ] No samples found: fastp [2024-09-10 14:50:09,427] multiqc [DEBUG ] No samples found: fastqc [2024-09-10 14:50:09,434] multiqc [DEBUG ] No samples found: pychopper [2024-09-10 14:50:09,452] multiqc [DEBUG ] No samples found: pycoqc [2024-09-10 14:50:09,461] multiqc [DEBUG ] No samples found: minionqc [2024-09-10 14:50:09,497] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-09-10 14:50:09,530] multiqc [DEBUG ] No samples found: clusterflow [2024-09-10 14:50:09,575] multiqc [DEBUG ] No samples found: bcl2fastq [2024-09-10 14:50:09,586] multiqc [DEBUG ] No samples found: bclconvert [2024-09-10 14:50:09,610] multiqc [DEBUG ] No samples found: interop [2024-09-10 14:50:09,645] multiqc [DEBUG ] No samples found: ivar [2024-09-10 14:50:09,675] multiqc [DEBUG ] No samples found: flash [2024-09-10 14:50:09,685] multiqc [DEBUG ] No samples found: seqyclean [2024-09-10 14:50:09,693] multiqc [DEBUG ] No samples found: optitype [2024-09-10 14:50:09,720] multiqc [INFO ] Compressing plot data [2024-09-10 14:50:09,752] multiqc [INFO ] Report : multiqc_report.html [2024-09-10 14:50:09,752] multiqc [INFO ] Data : multiqc_data [2024-09-10 14:50:09,752] multiqc [DEBUG ] Moving data file from '/scratch/tmp77_pcon3/multiqc_data' to '/projectnb/wax-dk/max/G177REL15/Scripts/99_final_summary/G177REL15_multiqc_report/multiqc_data' [2024-09-10 14:50:10,373] multiqc [INFO ] MultiQC complete