[2024-08-07 13:39:53,613] multiqc [DEBUG ] This is MultiQC v1.11 [2024-08-07 13:39:53,613] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-08-07 13:39:53,613] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-08-07 13:39:53,616] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-08-07 13:39:53,617] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-08-07 13:39:53,617] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-08-07 13:39:53,618] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177/SAMPLES /projectnb2/wax-dk/max/G177/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G177/Scripts/06_CollectMetrics/ [2024-08-07 13:39:54,168] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-08-07 13:39:54,168] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177/SAMPLES /projectnb2/wax-dk/max/G177/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G177/Scripts/06_CollectMetrics/ [2024-08-07 13:39:54,168] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G177/Scripts/14_final_summary/G177_DEFAULT_multiqc_report [2024-08-07 13:39:54,168] multiqc [DEBUG ] Template : default [2024-08-07 13:39:54,168] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-08-07 13:39:54,169] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-08-07 13:39:54,169] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp71kzwxjw [2024-08-07 13:39:54,804] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/SAMPLES [2024-08-07 13:39:54,804] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G177/Scripts/03_FASTQC [2024-08-07 13:39:54,804] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G177/Scripts/06_CollectMetrics [2024-08-07 13:39:54,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:39:54,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:39:55,062] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:55,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:55,065] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:55,065] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:55,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:55,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_hist.pdf [2024-08-07 13:39:55,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,129] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,129] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,130] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,130] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,130] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,130] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,130] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:55,150] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,020] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,020] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,020] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,020] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,021] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,041] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-08-07 13:39:56,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:56,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:56,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_metrics [2024-08-07 13:39:56,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:39:56,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:39:57,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:57,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:57,041] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:57,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:57,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:57,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_hist.pdf [2024-08-07 13:39:57,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,101] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,121] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:57,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,006] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,006] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,007] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,007] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,007] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,007] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,028] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-08-07 13:39:58,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:58,894] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:58,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_metrics [2024-08-07 13:39:58,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:39:58,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:39:59,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_hist.pdf [2024-08-07 13:39:59,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:39:59,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:39:59,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:39:59,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:39:59,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:39:59,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,105] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,105] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,105] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,106] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,106] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,106] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:39:59,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,018] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,018] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,022] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,022] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,022] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,022] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,023] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,023] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-08-07 13:40:00,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:40:00,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:40:00,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_metrics [2024-08-07 13:40:00,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:00,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:01,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:01,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:01,037] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:01,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:01,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:01,059] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_hist.pdf [2024-08-07 13:40:01,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,096] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,096] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:01,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,008] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,013] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,013] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,035] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-08-07 13:40:02,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:02,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:02,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_metrics [2024-08-07 13:40:02,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:02,918] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:02,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_hist.pdf [2024-08-07 13:40:03,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:03,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:03,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:03,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:03,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:03,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,068] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,068] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,069] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,089] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,976] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,976] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,977] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,977] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,977] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,977] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:03,977] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:04,000] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-08-07 13:40:04,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:04,871] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:04,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_metrics [2024-08-07 13:40:04,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:04,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:04,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_hist.pdf [2024-08-07 13:40:05,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:05,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:05,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:05,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:05,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:05,083] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:05,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,046] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,046] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,046] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,071] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-08-07 13:40:06,920] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:06,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:06,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_metrics [2024-08-07 13:40:06,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:06,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:07,054] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:07,057] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:07,057] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:07,057] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:07,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:07,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_hist.pdf [2024-08-07 13:40:07,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,108] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,108] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,108] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,109] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,109] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,109] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,109] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:07,130] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,006] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,010] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,011] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-08-07 13:40:08,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:08,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:08,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_metrics [2024-08-07 13:40:08,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:08,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:09,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:09,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:09,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:09,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:09,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:09,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_hist.pdf [2024-08-07 13:40:09,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:09,108] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,011] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,012] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-08-07 13:40:10,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:10,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:10,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_metrics [2024-08-07 13:40:10,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:10,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:11,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_hist.pdf [2024-08-07 13:40:11,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:11,040] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:11,041] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:11,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:11,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:11,109] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,112] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,117] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,118] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:11,139] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,009] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,010] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-08-07 13:40:12,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:12,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:12,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_metrics [2024-08-07 13:40:12,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:12,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:13,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_hist.pdf [2024-08-07 13:40:13,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:13,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:13,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:13,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:13,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:13,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,111] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,112] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,112] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,112] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,112] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,112] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:13,133] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,015] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,036] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-08-07 13:40:14,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:14,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:14,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_metrics [2024-08-07 13:40:14,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:14,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:15,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:15,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:15,013] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:15,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:15,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:15,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_hist.pdf [2024-08-07 13:40:15,073] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,076] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,080] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,081] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,081] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,081] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,081] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,081] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,102] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,964] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,972] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,973] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:15,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-08-07 13:40:16,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:16,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:16,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_metrics [2024-08-07 13:40:16,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:16,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:16,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:16,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:16,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:16,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:16,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:17,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_hist.pdf [2024-08-07 13:40:17,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,057] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,057] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,057] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,057] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,058] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,058] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,077] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,970] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:17,995] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-08-07 13:40:18,838] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:18,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:18,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_metrics [2024-08-07 13:40:18,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-08-07 13:40:18,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-08-07 13:40:18,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_hist.pdf [2024-08-07 13:40:18,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_metrics [2024-08-07 13:40:18,986] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_metrics [2024-08-07 13:40:18,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:19,992] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-08-07 13:40:20,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_metrics [2024-08-07 13:40:20,853] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_metrics [2024-08-07 13:40:20,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_metrics [2024-08-07 13:40:20,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-07 13:40:20,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-07 13:40:20,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-07 13:40:20,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-08-07 13:40:20,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-08-07 13:40:20,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-08-07 13:40:20,923] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-08-07 13:40:20,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-08-07 13:40:20,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-08-07 13:40:20,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-08-07 13:40:20,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-08-07 13:40:20,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-08-07 13:40:20,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-08-07 13:40:20,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-08-07 13:40:20,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-08-07 13:40:21,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-08-07 13:40:21,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-08-07 13:40:21,006] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-08-07 13:40:21,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-08-07 13:40:21,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-08-07 13:40:21,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-08-07 13:40:21,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-08-07 13:40:21,048] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-08-07 13:40:21,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-08-07 13:40:21,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-08-07 13:40:21,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-08-07 13:40:21,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-08-07 13:40:21,079] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-08-07 13:40:21,079] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-08-07 13:40:21,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-08-07 13:40:21,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-08-07 13:40:21,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-08-07 13:40:21,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-08-07 13:40:21,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-08-07 13:40:21,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-08-07 13:40:21,193] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-08-07 13:40:21,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-08-07 13:40:21,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-08-07 13:40:21,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-08-07 13:40:21,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-08-07 13:40:21,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-08-07 13:40:21,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-08-07 13:40:21,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-08-07 13:40:21,357] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-08-07 13:40:21,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-08-07 13:40:21,361] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-08-07 13:40:21,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-08-07 13:40:21,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-08-07 13:40:21,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-08-07 13:40:21,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-08-07 13:40:21,426] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-08-07 13:40:21,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-08-07 13:40:21,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-08-07 13:40:21,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-08-07 13:40:21,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-08-07 13:40:21,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-08-07 13:40:21,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-08-07 13:40:21,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-08-07 13:40:21,519] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-08-07 13:40:21,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-08-07 13:40:21,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-08-07 13:40:21,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-08-07 13:40:21,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-08-07 13:40:21,580] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-08-07 13:40:21,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-08-07 13:40:21,584] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-08-07 13:40:21,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-08-07 13:40:21,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-08-07 13:40:21,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-08-07 13:40:21,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-08-07 13:40:21,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-08-07 13:40:21,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-08-07 13:40:21,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-08-07 13:40:21,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-08-07 13:40:21,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-08-07 13:40:21,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-08-07 13:40:21,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-08-07 13:40:21,897] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-08-07 13:40:21,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-08-07 13:40:22,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2_fastqc.html [2024-08-07 13:40:22,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2_fastqc.html [2024-08-07 13:40:22,031] multiqc 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[2024-08-07 13:40:26,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-08-07 13:40:26,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-08-07 13:40:26,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-08-07 13:40:26,466] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,468] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,468] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:26,471] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-08-07 13:40:27,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-07 13:40:27,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-07 13:40:27,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-07 13:40:27,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-07 13:40:27,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-07 13:40:27,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-07 13:40:27,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-07 13:40:27,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-07 13:40:27,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-07 13:40:27,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-07 13:40:30,878] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-08-07 13:40:30,902] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-08-07 13:40:30,904] multiqc [DEBUG ] No samples found: custom_content [2024-08-07 13:40:30,914] multiqc [DEBUG ] No samples found: ccs [2024-08-07 13:40:30,939] multiqc [DEBUG ] No samples found: ngsderive [2024-08-07 13:40:30,962] multiqc [DEBUG ] No samples found: purple [2024-08-07 13:40:30,971] multiqc [DEBUG ] No samples found: conpair [2024-08-07 13:40:31,008] multiqc [DEBUG ] No samples found: lima [2024-08-07 13:40:31,040] multiqc [DEBUG ] No samples found: peddy [2024-08-07 13:40:31,052] multiqc [DEBUG ] No samples found: somalier [2024-08-07 13:40:31,075] multiqc [DEBUG ] No samples found: methylQA [2024-08-07 13:40:31,141] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-08-07 13:40:31,141] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-08-07 13:40:31,141] multiqc [DEBUG ] No samples found: mosdepth [2024-08-07 13:40:31,149] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-08-07 13:40:31,183] multiqc [DEBUG ] No samples found: qualimap [2024-08-07 13:40:31,214] multiqc [DEBUG ] No samples found: preseq [2024-08-07 13:40:31,250] multiqc [DEBUG ] No samples found: quast [2024-08-07 13:40:31,283] multiqc [DEBUG ] No samples found: qorts [2024-08-07 13:40:31,321] multiqc [DEBUG ] No samples found: rna_seqc [2024-08-07 13:40:31,350] multiqc [DEBUG ] No samples found: rockhopper [2024-08-07 13:40:31,388] multiqc [DEBUG ] No samples found: rsem [2024-08-07 13:40:31,454] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-08-07 13:40:31,484] multiqc [DEBUG ] No samples found: busco [2024-08-07 13:40:31,556] multiqc [DEBUG ] No samples found: bustools [2024-08-07 13:40:31,598] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-08-07 13:40:31,631] multiqc [DEBUG ] No samples found: gffcompare [2024-08-07 13:40:31,639] multiqc [DEBUG ] No samples found: disambiguate [2024-08-07 13:40:31,662] multiqc [DEBUG ] No samples found: supernova [2024-08-07 13:40:31,761] multiqc [DEBUG ] No samples found: deeptools [2024-08-07 13:40:31,793] multiqc [DEBUG ] No samples found: sargasso [2024-08-07 13:40:31,808] multiqc [DEBUG ] No samples found: verifybamid [2024-08-07 13:40:31,835] multiqc [DEBUG ] No samples found: mirtrace [2024-08-07 13:40:31,846] multiqc [DEBUG ] No samples found: happy [2024-08-07 13:40:31,854] multiqc [DEBUG ] No samples found: mirtop [2024-08-07 13:40:31,877] multiqc [DEBUG ] No samples found: sambamba [2024-08-07 13:40:31,889] multiqc [DEBUG ] No samples found: homer [2024-08-07 13:40:31,919] multiqc [DEBUG ] No samples found: hops [2024-08-07 13:40:31,928] multiqc [DEBUG ] No samples found: macs2 [2024-08-07 13:40:31,937] multiqc [DEBUG ] No samples found: theta2 [2024-08-07 13:40:31,961] multiqc [DEBUG ] No samples found: snpeff [2024-08-07 13:40:31,996] multiqc [DEBUG ] No samples found: gatk [2024-08-07 13:40:32,005] multiqc [DEBUG ] No samples found: htseq [2024-08-07 13:40:32,045] multiqc [DEBUG ] No samples found: bcftools [2024-08-07 13:40:32,082] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M9_sorted [2024-08-07 13:40:32,084] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M5_sorted [2024-08-07 13:40:32,085] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M8_sorted [2024-08-07 13:40:32,087] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M4_sorted [2024-08-07 13:40:32,088] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M11_sorted [2024-08-07 13:40:32,090] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M3_sorted [2024-08-07 13:40:32,091] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M10_sorted [2024-08-07 13:40:32,092] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M13_sorted [2024-08-07 13:40:32,093] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M2_sorted [2024-08-07 13:40:32,094] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M12_sorted [2024-08-07 13:40:32,095] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M1_sorted [2024-08-07 13:40:32,096] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M7_sorted [2024-08-07 13:40:32,096] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M6_sorted [2024-08-07 13:40:32,097] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-08-07 13:40:32,154] multiqc [DEBUG ] No samples found: fgbio [2024-08-07 13:40:32,259] multiqc [DEBUG ] No samples found: dragen [2024-08-07 13:40:32,286] multiqc [DEBUG ] No samples found: dedup [2024-08-07 13:40:32,317] multiqc [DEBUG ] No samples found: damageprofiler [2024-08-07 13:40:32,547] multiqc [DEBUG ] No samples found: biobambam2 [2024-08-07 13:40:32,572] multiqc [DEBUG ] No samples found: jcvi [2024-08-07 13:40:32,580] multiqc [DEBUG ] No samples found: mtnucratio [2024-08-07 13:40:32,674] multiqc.modules.picard.picard [INFO ] Found 13 InsertSizeMetrics reports [2024-08-07 13:40:32,689] multiqc.modules.picard.picard [INFO ] Found 13 RnaSeqMetrics reports [2024-08-07 13:40:32,716] multiqc [DEBUG ] No samples found: vep [2024-08-07 13:40:32,759] multiqc [DEBUG ] No samples found: sentieon [2024-08-07 13:40:32,769] multiqc [DEBUG ] No samples found: prokka [2024-08-07 13:40:32,788] multiqc [DEBUG ] No samples found: qc3C [2024-08-07 13:40:32,828] multiqc [DEBUG ] No samples found: nanostat [2024-08-07 13:40:32,836] multiqc [DEBUG ] No samples found: samblaster [2024-08-07 13:40:32,934] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-08-07 13:40:32,970] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-08-07 13:40:32,979] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-08-07 13:40:32,987] multiqc [DEBUG ] No samples found: bamtools [2024-08-07 13:40:32,993] multiqc [DEBUG ] No samples found: jellyfish [2024-08-07 13:40:33,003] multiqc [DEBUG ] No samples found: vcftools [2024-08-07 13:40:33,010] multiqc [DEBUG ] No samples found: longranger [2024-08-07 13:40:33,038] multiqc [DEBUG ] No samples found: stacks [2024-08-07 13:40:33,050] multiqc [DEBUG ] No samples found: varscan2 [2024-08-07 13:40:33,067] multiqc [DEBUG ] No samples found: snippy [2024-08-07 13:40:33,133] multiqc [DEBUG ] No samples found: bbmap [2024-08-07 13:40:33,171] multiqc [DEBUG ] No samples found: bismark [2024-08-07 13:40:33,208] multiqc [DEBUG ] No samples found: biscuit [2024-08-07 13:40:33,225] multiqc [DEBUG ] No samples found: hicexplorer [2024-08-07 13:40:33,263] multiqc [DEBUG ] No samples found: hicup [2024-08-07 13:40:33,296] multiqc [DEBUG ] No samples found: hicpro [2024-08-07 13:40:33,305] multiqc [DEBUG ] No samples found: salmon [2024-08-07 13:40:33,313] multiqc [DEBUG ] No samples found: kallisto [2024-08-07 13:40:33,349] multiqc [DEBUG ] No samples found: slamdunk [2024-08-07 13:40:33,402] multiqc.modules.star.star [INFO ] Found 13 reports [2024-08-07 13:40:33,409] multiqc [DEBUG ] No samples found: hisat2 [2024-08-07 13:40:33,425] multiqc [DEBUG ] No samples found: tophat [2024-08-07 13:40:33,465] multiqc [DEBUG ] No samples found: bowtie2 [2024-08-07 13:40:33,474] multiqc [DEBUG ] No samples found: bowtie1 [2024-08-07 13:40:33,510] multiqc [DEBUG ] No samples found: snpsplit [2024-08-07 13:40:33,541] multiqc [DEBUG ] No samples found: odgi [2024-08-07 13:40:33,560] multiqc [DEBUG ] No samples found: pangolin [2024-08-07 13:40:33,569] multiqc [DEBUG ] No samples found: kat [2024-08-07 13:40:33,576] multiqc [DEBUG ] No samples found: leehom [2024-08-07 13:40:33,612] multiqc [DEBUG ] No samples found: adapterRemoval [2024-08-07 13:40:33,620] multiqc [DEBUG ] No samples found: clipandmerge [2024-08-07 13:40:33,650] multiqc [DEBUG ] No samples found: cutadapt [2024-08-07 13:40:33,659] multiqc [DEBUG ] No samples found: flexbar [2024-08-07 13:40:33,666] multiqc [DEBUG ] No samples found: kaiju [2024-08-07 13:40:33,674] multiqc [DEBUG ] No samples found: kraken [2024-08-07 13:40:33,695] multiqc [DEBUG ] No samples found: malt [2024-08-07 13:40:33,731] multiqc [DEBUG ] No samples found: trimmomatic [2024-08-07 13:40:33,766] multiqc [DEBUG ] No samples found: sickle [2024-08-07 13:40:33,803] multiqc [DEBUG ] No samples found: skewer [2024-08-07 13:40:33,812] multiqc [DEBUG ] No samples found: sortmerna [2024-08-07 13:40:33,820] multiqc [DEBUG ] No samples found: biobloomtools [2024-08-07 13:40:33,854] multiqc [DEBUG ] No samples found: fastq_screen [2024-08-07 13:40:33,882] multiqc [DEBUG ] No samples found: afterqc [2024-08-07 13:40:33,931] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:33,982] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,007] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,046] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,063] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,095] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,131] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,151] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,166] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,196] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,210] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,233] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,260] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-07 13:40:34,262] multiqc.modules.fastp.fastp [INFO ] Found 13 reports [2024-08-07 13:40:37,638] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2024-08-07 13:40:38,012] multiqc [DEBUG ] No samples found: pychopper [2024-08-07 13:40:38,038] multiqc [DEBUG ] No samples found: pycoqc [2024-08-07 13:40:38,047] multiqc [DEBUG ] No samples found: minionqc [2024-08-07 13:40:38,076] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-08-07 13:40:38,116] multiqc [DEBUG ] No samples found: clusterflow [2024-08-07 13:40:38,145] multiqc [DEBUG ] No samples found: bcl2fastq [2024-08-07 13:40:38,154] multiqc [DEBUG ] No samples found: bclconvert [2024-08-07 13:40:38,186] multiqc [DEBUG ] No samples found: interop [2024-08-07 13:40:38,219] multiqc [DEBUG ] No samples found: ivar [2024-08-07 13:40:38,237] multiqc [DEBUG ] No samples found: flash [2024-08-07 13:40:38,247] multiqc [DEBUG ] No samples found: seqyclean [2024-08-07 13:40:38,254] multiqc [DEBUG ] No samples found: optitype [2024-08-07 13:40:38,319] multiqc [INFO ] Compressing plot data [2024-08-07 13:40:39,672] multiqc [INFO ] Report : multiqc_report.html [2024-08-07 13:40:39,672] multiqc [INFO ] Data : multiqc_data [2024-08-07 13:40:39,672] multiqc [DEBUG ] Moving data file from '/scratch/tmp71kzwxjw/multiqc_data' to '/projectnb/wax-dk/max/G177/Scripts/14_final_summary/G177_DEFAULT_multiqc_report/multiqc_data' [2024-08-07 13:40:40,368] multiqc [INFO ] MultiQC complete