[2024-07-29 12:17:34,089] multiqc [DEBUG ] This is MultiQC v1.11 [2024-07-29 12:17:34,089] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-07-29 12:17:34,089] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-07-29 12:17:34,089] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-29 12:17:34,090] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-07-29 12:17:34,090] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-07-29 12:17:34,090] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177/SAMPLES /projectnb/wax-dk/max/G177/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G177/Scripts/06_CollectMetrics/ [2024-07-29 12:17:34,784] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-29 12:17:34,785] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177/SAMPLES /projectnb/wax-dk/max/G177/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G177/Scripts/06_CollectMetrics/ [2024-07-29 12:17:34,785] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G177/Scripts/14_final_summary/G177_RELAXED_multiqc_report [2024-07-29 12:17:34,785] multiqc [DEBUG ] Template : default [2024-07-29 12:17:34,785] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-07-29 12:17:34,786] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-07-29 12:17:34,786] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpg88654c5 [2024-07-29 12:17:34,875] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/SAMPLES [2024-07-29 12:17:34,876] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/Scripts/03_FASTQC [2024-07-29 12:17:34,876] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/Scripts/06_CollectMetrics [2024-07-29 12:17:35,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:35,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:35,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:35,127] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:35,128] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:35,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:35,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:35,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_hist.pdf [2024-07-29 12:17:35,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,164] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:35,179] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,034] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,056] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-29 12:17:36,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:36,912] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:36,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-29 12:17:36,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:36,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:37,054] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:37,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:37,056] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:37,056] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:37,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:37,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_hist.pdf [2024-07-29 12:17:37,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,089] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,113] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:37,977] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-29 12:17:38,814] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:38,817] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:38,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-29 12:17:38,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:38,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:38,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_hist.pdf [2024-07-29 12:17:38,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:38,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:38,978] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:38,978] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:38,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:39,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,013] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,017] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:39,896] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-29 12:17:40,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:40,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:40,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-29 12:17:40,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:40,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:40,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:40,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:40,868] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:40,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:40,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:40,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_hist.pdf [2024-07-29 12:17:40,902] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,908] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:40,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,778] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,778] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:41,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-29 12:17:42,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:42,658] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:42,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-29 12:17:42,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:42,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:42,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_hist.pdf [2024-07-29 12:17:42,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:42,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:42,815] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:42,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:42,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:42,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,845] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:42,862] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,736] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:43,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-29 12:17:44,619] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:44,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:44,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-29 12:17:44,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:44,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:44,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_hist.pdf [2024-07-29 12:17:44,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:44,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:44,746] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:44,746] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:44,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:44,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:44,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,680] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:45,696] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-29 12:17:46,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:46,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:46,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-29 12:17:46,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:46,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:46,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:46,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:46,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:46,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:46,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:46,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_hist.pdf [2024-07-29 12:17:46,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,722] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,722] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,722] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,722] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,722] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:46,738] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,607] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,611] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,612] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:47,634] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-29 12:17:48,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:48,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:48,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-29 12:17:48,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:48,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:48,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:48,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:48,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:48,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:48,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:48,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_hist.pdf [2024-07-29 12:17:48,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,690] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:48,705] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,575] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:49,593] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-29 12:17:50,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:50,442] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:50,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-29 12:17:50,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:50,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:50,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_hist.pdf [2024-07-29 12:17:50,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:50,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:50,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:50,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:50,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:50,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,620] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,620] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,624] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:50,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,491] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:51,507] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-29 12:17:52,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:52,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:52,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-29 12:17:52,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:52,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:52,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_hist.pdf [2024-07-29 12:17:52,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:52,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:52,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:52,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:52,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:52,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:52,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:53,449] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-29 12:17:54,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:54,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:54,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-29 12:17:54,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:54,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:54,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:54,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:54,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:54,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:54,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:54,495] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_hist.pdf [2024-07-29 12:17:54,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,502] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,502] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,506] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,506] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,506] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,507] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,507] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,507] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,507] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:54,524] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,368] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:55,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-29 12:17:56,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:56,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:56,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-29 12:17:56,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:56,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:56,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:56,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:56,394] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:56,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:56,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:56,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_hist.pdf [2024-07-29 12:17:56,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,452] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,453] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,453] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,453] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,453] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:56,472] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,347] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,347] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,347] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,347] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,347] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,348] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,348] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:57,369] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-29 12:17:58,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:58,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:58,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-29 12:17:58,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-29 12:17:58,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-29 12:17:58,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_hist.pdf [2024-07-29 12:17:58,352] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-29 12:17:58,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-29 12:17:58,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded 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it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:58,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,352] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,352] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,353] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,353] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,353] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:17:59,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-29 12:18:00,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-29 12:18:00,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-29 12:18:00,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-29 12:18:00,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-29 12:18:00,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-29 12:18:00,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-29 12:18:00,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-29 12:18:00,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-29 12:18:00,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-29 12:18:00,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-29 12:18:00,285] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-29 12:18:00,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-29 12:18:00,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-29 12:18:00,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-29 12:18:00,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-29 12:18:00,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-29 12:18:00,330] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-29 12:18:00,332] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-29 12:18:00,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-29 12:18:00,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-29 12:18:00,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-29 12:18:00,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-29 12:18:00,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-29 12:18:00,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-29 12:18:00,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-29 12:18:00,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-29 12:18:00,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-29 12:18:00,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-29 12:18:00,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-29 12:18:00,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-29 12:18:00,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-29 12:18:00,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-29 12:18:00,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-29 12:18:00,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-29 12:18:00,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-29 12:18:00,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-29 12:18:00,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-29 12:18:00,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-29 12:18:00,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-29 12:18:00,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-29 12:18:00,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-29 12:18:00,561] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-29 12:18:00,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-29 12:18:00,563] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-29 12:18:00,563] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-29 12:18:00,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-29 12:18:00,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-29 12:18:00,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-29 12:18:00,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-29 12:18:00,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-29 12:18:00,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-29 12:18:00,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-29 12:18:00,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-29 12:18:00,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-29 12:18:00,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-29 12:18:00,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-29 12:18:00,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-29 12:18:00,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-29 12:18:00,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-29 12:18:00,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-29 12:18:00,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-29 12:18:00,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-29 12:18:00,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-29 12:18:00,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-29 12:18:00,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-29 12:18:00,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-29 12:18:00,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-29 12:18:00,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-29 12:18:00,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-29 12:18:00,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-29 12:18:00,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-29 12:18:00,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-29 12:18:00,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-29 12:18:00,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-29 12:18:00,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-29 12:18:00,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-29 12:18:01,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-07-29 12:18:01,085] multiqc [DEBUG ] File ignored by hicexplorer because 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[2024-07-29 12:18:04,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-07-29 12:18:04,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-07-29 12:18:04,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-07-29 12:18:04,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,935] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:04,938] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-07-29 12:18:05,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-29 12:18:05,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-29 12:18:05,641] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-29 12:18:05,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-29 12:18:05,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-29 12:18:05,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-29 12:18:05,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-29 12:18:05,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-29 12:18:05,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-29 12:18:05,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-29 12:18:06,214] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-29 12:18:06,215] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-29 12:18:06,218] multiqc [DEBUG ] No samples found: custom_content [2024-07-29 12:18:06,225] multiqc [DEBUG ] No samples found: ccs [2024-07-29 12:18:06,231] multiqc [DEBUG ] No samples found: ngsderive [2024-07-29 12:18:06,236] multiqc [DEBUG ] No samples found: purple [2024-07-29 12:18:06,241] multiqc [DEBUG ] No samples found: conpair [2024-07-29 12:18:06,247] multiqc [DEBUG ] No samples found: lima [2024-07-29 12:18:06,251] multiqc [DEBUG ] No samples found: peddy [2024-07-29 12:18:06,256] multiqc [DEBUG ] No samples found: somalier [2024-07-29 12:18:06,262] multiqc [DEBUG ] No samples found: methylQA [2024-07-29 12:18:06,272] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-07-29 12:18:06,272] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-07-29 12:18:06,272] multiqc [DEBUG ] No samples found: mosdepth [2024-07-29 12:18:06,280] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-29 12:18:06,284] multiqc [DEBUG ] No samples found: qualimap [2024-07-29 12:18:06,291] multiqc [DEBUG ] No samples found: preseq [2024-07-29 12:18:06,297] multiqc [DEBUG ] No samples found: quast [2024-07-29 12:18:06,303] multiqc [DEBUG ] No samples found: qorts [2024-07-29 12:18:06,309] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-29 12:18:06,316] multiqc [DEBUG ] No samples found: rockhopper [2024-07-29 12:18:06,323] multiqc [DEBUG ] No samples found: rsem [2024-07-29 12:18:06,350] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-07-29 12:18:06,360] multiqc [DEBUG ] No samples found: busco [2024-07-29 12:18:06,368] multiqc [DEBUG ] No samples found: bustools [2024-07-29 12:18:06,375] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-29 12:18:06,381] multiqc [DEBUG ] No samples found: gffcompare [2024-07-29 12:18:06,388] multiqc [DEBUG ] No samples found: disambiguate [2024-07-29 12:18:06,394] multiqc [DEBUG ] No samples found: supernova [2024-07-29 12:18:06,411] multiqc [DEBUG ] No samples found: deeptools [2024-07-29 12:18:06,418] multiqc [DEBUG ] No samples found: sargasso [2024-07-29 12:18:06,424] multiqc [DEBUG ] No samples found: verifybamid [2024-07-29 12:18:06,430] multiqc [DEBUG ] No samples found: mirtrace [2024-07-29 12:18:06,435] multiqc [DEBUG ] No samples found: happy [2024-07-29 12:18:06,440] multiqc [DEBUG ] No samples found: mirtop [2024-07-29 12:18:06,449] multiqc [DEBUG ] No samples found: sambamba [2024-07-29 12:18:06,457] multiqc [DEBUG ] No samples found: homer [2024-07-29 12:18:06,462] multiqc [DEBUG ] No samples found: hops [2024-07-29 12:18:06,469] multiqc [DEBUG ] No samples found: macs2 [2024-07-29 12:18:06,475] multiqc [DEBUG ] No samples found: theta2 [2024-07-29 12:18:06,480] multiqc [DEBUG ] No samples found: snpeff [2024-07-29 12:18:06,490] multiqc [DEBUG ] No samples found: gatk [2024-07-29 12:18:06,496] multiqc [DEBUG ] No samples found: htseq [2024-07-29 12:18:06,502] multiqc [DEBUG ] No samples found: bcftools [2024-07-29 12:18:06,510] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M9_sorted [2024-07-29 12:18:06,511] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M5_sorted [2024-07-29 12:18:06,512] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M8_sorted [2024-07-29 12:18:06,513] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M4_sorted [2024-07-29 12:18:06,515] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M11_sorted [2024-07-29 12:18:06,516] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M3_sorted [2024-07-29 12:18:06,517] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M10_sorted [2024-07-29 12:18:06,518] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M13_sorted [2024-07-29 12:18:06,519] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M2_sorted [2024-07-29 12:18:06,520] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M12_sorted [2024-07-29 12:18:06,521] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M1_sorted [2024-07-29 12:18:06,523] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M7_sorted [2024-07-29 12:18:06,526] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M6_sorted [2024-07-29 12:18:06,526] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-07-29 12:18:06,538] multiqc [DEBUG ] No samples found: fgbio [2024-07-29 12:18:06,554] multiqc [DEBUG ] No samples found: dragen [2024-07-29 12:18:06,562] multiqc [DEBUG ] No samples found: dedup [2024-07-29 12:18:06,569] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-29 12:18:06,608] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-29 12:18:06,617] multiqc [DEBUG ] No samples found: jcvi [2024-07-29 12:18:06,624] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-29 12:18:06,727] multiqc.modules.picard.picard [INFO ] Found 13 InsertSizeMetrics reports [2024-07-29 12:18:06,746] multiqc.modules.picard.picard [INFO ] Found 13 RnaSeqMetrics reports [2024-07-29 12:18:06,751] multiqc [DEBUG ] No samples found: vep [2024-07-29 12:18:06,760] multiqc [DEBUG ] No samples found: sentieon [2024-07-29 12:18:06,765] multiqc [DEBUG ] No samples found: prokka [2024-07-29 12:18:06,771] multiqc [DEBUG ] No samples found: qc3C [2024-07-29 12:18:06,777] multiqc [DEBUG ] No samples found: nanostat [2024-07-29 12:18:06,784] multiqc [DEBUG ] No samples found: samblaster [2024-07-29 12:18:06,832] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-07-29 12:18:06,838] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-29 12:18:06,842] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-07-29 12:18:06,849] multiqc [DEBUG ] No samples found: bamtools [2024-07-29 12:18:06,854] multiqc [DEBUG ] No samples found: jellyfish [2024-07-29 12:18:06,868] multiqc [DEBUG ] No samples found: vcftools [2024-07-29 12:18:06,875] multiqc [DEBUG ] No samples found: longranger [2024-07-29 12:18:06,882] multiqc [DEBUG ] No samples found: stacks [2024-07-29 12:18:06,891] multiqc [DEBUG ] No samples found: varscan2 [2024-07-29 12:18:06,896] multiqc [DEBUG ] No samples found: snippy [2024-07-29 12:18:06,918] multiqc [DEBUG ] No samples found: bbmap [2024-07-29 12:18:06,927] multiqc [DEBUG ] No samples found: bismark [2024-07-29 12:18:06,933] multiqc [DEBUG ] No samples found: biscuit [2024-07-29 12:18:06,940] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-29 12:18:06,945] multiqc [DEBUG ] No samples found: hicup [2024-07-29 12:18:06,950] multiqc [DEBUG ] No samples found: hicpro [2024-07-29 12:18:06,958] multiqc [DEBUG ] No samples found: salmon [2024-07-29 12:18:06,966] multiqc [DEBUG ] No samples found: kallisto [2024-07-29 12:18:06,973] multiqc [DEBUG ] No samples found: slamdunk [2024-07-29 12:18:06,994] multiqc.modules.star.star [INFO ] Found 13 reports [2024-07-29 12:18:07,000] multiqc [DEBUG ] No samples found: hisat2 [2024-07-29 12:18:07,005] multiqc [DEBUG ] No samples found: tophat [2024-07-29 12:18:07,013] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-29 12:18:07,020] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-29 12:18:07,026] multiqc [DEBUG ] No samples found: snpsplit [2024-07-29 12:18:07,034] multiqc [DEBUG ] No samples found: odgi [2024-07-29 12:18:07,040] multiqc [DEBUG ] No samples found: pangolin [2024-07-29 12:18:07,049] multiqc [DEBUG ] No samples found: kat [2024-07-29 12:18:07,056] multiqc [DEBUG ] No samples found: leehom [2024-07-29 12:18:07,062] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-29 12:18:07,068] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-29 12:18:07,073] multiqc [DEBUG ] No samples found: cutadapt [2024-07-29 12:18:07,078] multiqc [DEBUG ] No samples found: flexbar [2024-07-29 12:18:07,087] multiqc [DEBUG ] No samples found: kaiju [2024-07-29 12:18:07,096] multiqc [DEBUG ] No samples found: kraken [2024-07-29 12:18:07,104] multiqc [DEBUG ] No samples found: malt [2024-07-29 12:18:07,111] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-29 12:18:07,117] multiqc [DEBUG ] No samples found: sickle [2024-07-29 12:18:07,125] multiqc [DEBUG ] No samples found: skewer [2024-07-29 12:18:07,130] multiqc [DEBUG ] No samples found: sortmerna [2024-07-29 12:18:07,139] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-29 12:18:07,146] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-29 12:18:07,152] multiqc [DEBUG ] No samples found: afterqc [2024-07-29 12:18:07,164] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,170] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,175] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,179] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,182] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,186] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,189] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,193] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,196] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,199] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,202] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,205] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,209] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-29 12:18:07,209] multiqc.modules.fastp.fastp [INFO ] Found 13 reports [2024-07-29 12:18:09,211] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2024-07-29 12:18:09,592] multiqc [DEBUG ] No samples found: pychopper [2024-07-29 12:18:09,597] multiqc [DEBUG ] No samples found: pycoqc [2024-07-29 12:18:09,601] multiqc [DEBUG ] No samples found: minionqc [2024-07-29 12:18:09,605] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-29 12:18:09,610] multiqc [DEBUG ] No samples found: clusterflow [2024-07-29 12:18:09,615] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-29 12:18:09,620] multiqc [DEBUG ] No samples found: bclconvert [2024-07-29 12:18:09,627] multiqc [DEBUG ] No samples found: interop [2024-07-29 12:18:09,634] multiqc [DEBUG ] No samples found: ivar [2024-07-29 12:18:09,639] multiqc [DEBUG ] No samples found: flash [2024-07-29 12:18:09,645] multiqc [DEBUG ] No samples found: seqyclean [2024-07-29 12:18:09,651] multiqc [DEBUG ] No samples found: optitype [2024-07-29 12:18:09,713] multiqc [INFO ] Compressing plot data [2024-07-29 12:18:11,017] multiqc [INFO ] Report : multiqc_report.html [2024-07-29 12:18:11,017] multiqc [INFO ] Data : multiqc_data [2024-07-29 12:18:11,017] multiqc [DEBUG ] Moving data file from '/scratch/tmpg88654c5/multiqc_data' to '/projectnb/wax-dk/max/G177/Scripts/14_final_summary/G177_RELAXED_multiqc_report/multiqc_data' [2024-07-29 12:18:11,147] multiqc [INFO ] MultiQC complete