[2024-07-23 13:53:39,221] multiqc [DEBUG ] This is MultiQC v1.11 [2024-07-23 13:53:39,222] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-07-23 13:53:39,222] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-07-23 13:53:39,222] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-23 13:53:39,224] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-07-23 13:53:39,224] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-07-23 13:53:39,224] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177/SAMPLES /projectnb/wax-dk/max/G177/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G177/Scripts/06_CollectMetrics/ [2024-07-23 13:53:39,690] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-23 13:53:39,690] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G177/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G177/SAMPLES /projectnb/wax-dk/max/G177/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G177/Scripts/06_CollectMetrics/ [2024-07-23 13:53:39,690] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G177/Scripts/14_final_summary/G177_multiqc_report [2024-07-23 13:53:39,690] multiqc [DEBUG ] Template : default [2024-07-23 13:53:39,690] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-07-23 13:53:39,691] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-07-23 13:53:39,704] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpq_2v7jg1 [2024-07-23 13:53:39,782] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/SAMPLES [2024-07-23 13:53:39,782] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/Scripts/03_FASTQC [2024-07-23 13:53:39,782] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G177/Scripts/06_CollectMetrics [2024-07-23 13:53:39,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:39,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_CKDL200148791-1a-AK7208-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:40,026] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:40,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:40,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:40,028] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:40,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:40,042] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M9_hist.pdf [2024-07-23 13:53:40,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,075] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,096] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,990] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:40,999] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:41,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M9_featureCounts.out [2024-07-23 13:53:41,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:41,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:41,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M9_metrics [2024-07-23 13:53:41,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:41,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_CKDL200148791-1a-AK7208-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:42,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:42,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:42,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:42,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:42,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:42,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M5_hist.pdf [2024-07-23 13:53:42,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:42,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,005] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,026] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M5_featureCounts.out [2024-07-23 13:53:43,904] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:43,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:43,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M5_metrics [2024-07-23 13:53:43,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:43,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_CKDL200148791-1a-AK7208-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:44,011] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M8_hist.pdf [2024-07-23 13:53:44,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:44,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:44,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:44,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:44,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:44,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,068] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,072] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,090] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,977] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,979] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,979] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,982] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,982] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,983] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,983] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,983] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,983] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:44,983] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:45,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M8_featureCounts.out [2024-07-23 13:53:45,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:45,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:45,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M8_metrics [2024-07-23 13:53:45,917] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:45,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_CKDL200148791-1a-AK7207-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:46,016] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:46,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:46,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:46,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:46,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:46,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M4_hist.pdf [2024-07-23 13:53:46,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,064] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,068] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,068] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,068] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,068] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,089] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,991] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:46,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:47,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M4_featureCounts.out [2024-07-23 13:53:47,910] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:47,913] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:47,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M4_metrics [2024-07-23 13:53:47,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:47,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_CKDL200148791-1a-AK7208-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:48,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M11_hist.pdf [2024-07-23 13:53:48,044] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:48,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:48,047] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:48,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:48,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:48,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,093] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:48,114] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,025] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,025] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,030] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,030] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,031] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,031] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,031] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,031] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,031] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,052] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M11_featureCounts.out [2024-07-23 13:53:49,935] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:49,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:49,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M11_metrics [2024-07-23 13:53:49,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:49,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_CKDL200148791-1a-AK7207-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:50,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M3_hist.pdf [2024-07-23 13:53:50,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:50,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:50,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:50,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:50,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:50,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,108] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,108] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,112] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:50,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,011] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,034] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M3_featureCounts.out [2024-07-23 13:53:51,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:51,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:51,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M3_metrics [2024-07-23 13:53:51,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:51,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_CKDL200148791-1a-AK7208-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:51,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:52,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:52,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:52,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:52,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:52,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M10_hist.pdf [2024-07-23 13:53:52,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,041] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,044] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,045] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,045] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,045] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,045] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,045] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,951] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,955] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:52,974] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M10_featureCounts.out [2024-07-23 13:53:53,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:53,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:53,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M10_metrics [2024-07-23 13:53:53,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:53,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_CKDL200148791-1a-AK7209-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:53,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:53,931] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:53,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:53,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:53,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:53,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M13_hist.pdf [2024-07-23 13:53:53,974] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,977] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:53,982] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,893] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,893] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,893] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,893] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:54,912] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M13_featureCounts.out [2024-07-23 13:53:55,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:55,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:55,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M13_metrics [2024-07-23 13:53:55,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:55,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_CKDL200148791-1a-AK7207-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:55,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M2_hist.pdf [2024-07-23 13:53:55,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:55,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:55,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:55,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:55,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:55,958] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,961] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,966] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,966] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:55,988] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:56,895] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M2_featureCounts.out [2024-07-23 13:53:57,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:57,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:57,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M2_metrics [2024-07-23 13:53:57,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:57,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_CKDL200148791-1a-AK7208-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:57,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M12_hist.pdf [2024-07-23 13:53:57,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:57,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:57,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:57,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:57,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:57,975] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,979] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,979] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:57,984] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,005] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,896] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:58,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M12_featureCounts.out [2024-07-23 13:53:59,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:59,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:59,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M12_metrics [2024-07-23 13:53:59,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:53:59,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:53:59,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:53:59,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:53:59,940] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:53:59,940] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:53:59,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:53:59,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M1_hist.pdf [2024-07-23 13:53:59,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,984] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:53:59,988] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,009] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,912] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,928] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,933] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,933] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,933] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,933] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,933] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,934] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,934] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:00,959] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M1_featureCounts.out [2024-07-23 13:54:01,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:54:01,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:54:01,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M1_metrics [2024-07-23 13:54:01,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:54:01,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_CKDL200148791-1a-AK7208-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:54:02,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:02,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:02,017] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:02,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:02,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:02,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M7_hist.pdf [2024-07-23 13:54:02,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,079] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,079] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,079] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,101] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:02,998] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:03,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M7_featureCounts.out [2024-07-23 13:54:03,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:03,903] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:03,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M7_metrics [2024-07-23 13:54:03,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:54:03,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_CKDL200148791-1a-AK7208-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:54:04,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G177_M6_hist.pdf [2024-07-23 13:54:04,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:04,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:04,037] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:04,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:04,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:04,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,106] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,106] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:04,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,044] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,047] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,073] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G177_M6_featureCounts.out [2024-07-23 13:54:05,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:05,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:06,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G177_M6_metrics [2024-07-23 13:54:06,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:54:06,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:54:06,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:54:06,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:54:06,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:54:06,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:54:06,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 13:54:06,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 13:54:06,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:54:06,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:54:06,115] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:54:06,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:54:06,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:54:06,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 13:54:06,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 13:54:06,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-23 13:54:06,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-23 13:54:06,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-23 13:54:06,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-23 13:54:06,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M10.o8776951 [2024-07-23 13:54:06,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-23 13:54:06,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-23 13:54:06,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-23 13:54:06,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-23 13:54:06,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M11.o8776952 [2024-07-23 13:54:06,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-23 13:54:06,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-23 13:54:06,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-23 13:54:06,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-23 13:54:06,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M3.o8776944 [2024-07-23 13:54:06,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-23 13:54:06,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-23 13:54:06,314] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-23 13:54:06,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-23 13:54:06,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M1.o8776942 [2024-07-23 13:54:06,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M13.o8776954 [2024-07-23 13:54:06,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M13.o8776954 [2024-07-23 13:54:06,362] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M13.o8776954 [2024-07-23 13:54:06,362] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M13.o8776954 [2024-07-23 13:54:06,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M13.o8776954 [2024-07-23 13:54:06,385] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-23 13:54:06,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-23 13:54:06,387] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-23 13:54:06,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-23 13:54:06,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M5.o8776946 [2024-07-23 13:54:06,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-23 13:54:06,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-23 13:54:06,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-23 13:54:06,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-23 13:54:06,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M12.o8776953 [2024-07-23 13:54:06,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-23 13:54:06,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-23 13:54:06,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-23 13:54:06,495] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-23 13:54:06,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M6.o8776947 [2024-07-23 13:54:06,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-23 13:54:06,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-23 13:54:06,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-23 13:54:06,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-23 13:54:06,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M2.o8776943 [2024-07-23 13:54:06,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-23 13:54:06,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-23 13:54:06,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-23 13:54:06,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-23 13:54:06,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M9.o8776950 [2024-07-23 13:54:06,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-23 13:54:06,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-23 13:54:06,641] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-23 13:54:06,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-23 13:54:06,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M4.o8776945 [2024-07-23 13:54:06,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-23 13:54:06,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-23 13:54:06,682] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-23 13:54:06,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-23 13:54:06,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M7.o8776948 [2024-07-23 13:54:06,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-23 13:54:06,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-23 13:54:06,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-23 13:54:06,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-23 13:54:06,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G177_G177_M8.o8776949 [2024-07-23 13:54:06,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-07-23 13:54:06,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-07-23 13:54:06,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-07-23 13:54:06,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-07-23 13:54:06,954] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-07-23 13:54:06,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-07-23 13:54:07,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2_fastqc.html [2024-07-23 13:54:07,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G177_M1_CKDL200148791-1a-AK7207-AK7214_HTMC7DSXX_L1_2_fastqc.html [2024-07-23 13:54:07,080] multiqc 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ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G177_G177_M8.o8791558 [2024-07-23 13:54:11,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G177_G177_M1.o8791551 [2024-07-23 13:54:11,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G177_G177_M1.o8791551 [2024-07-23 13:54:11,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G177_G177_M1.o8791551 [2024-07-23 13:54:11,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G177_G177_M1.o8791551 [2024-07-23 13:54:11,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G177_G177_M1.o8791551 [2024-07-23 13:54:11,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-07-23 13:54:11,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-07-23 13:54:11,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-07-23 13:54:11,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-07-23 13:54:11,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,453] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,453] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:11,453] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:54:12,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:54:12,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:54:12,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:54:12,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:54:12,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:54:12,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:54:12,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:54:12,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:54:12,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:54:12,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:54:13,045] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 13:54:13,047] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 13:54:13,049] multiqc [DEBUG ] No samples found: custom_content [2024-07-23 13:54:13,055] multiqc [DEBUG ] No samples found: ccs [2024-07-23 13:54:13,060] multiqc [DEBUG ] No samples found: ngsderive [2024-07-23 13:54:13,065] multiqc [DEBUG ] No samples found: purple [2024-07-23 13:54:13,069] multiqc [DEBUG ] No samples found: conpair [2024-07-23 13:54:13,074] multiqc [DEBUG ] No samples found: lima [2024-07-23 13:54:13,078] multiqc [DEBUG ] No samples found: peddy [2024-07-23 13:54:13,082] multiqc [DEBUG ] No samples found: somalier [2024-07-23 13:54:13,086] multiqc [DEBUG ] No samples found: methylQA [2024-07-23 13:54:13,093] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-07-23 13:54:13,093] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-07-23 13:54:13,093] multiqc [DEBUG ] No samples found: mosdepth [2024-07-23 13:54:13,097] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-23 13:54:13,100] multiqc [DEBUG ] No samples found: qualimap [2024-07-23 13:54:13,104] multiqc [DEBUG ] No samples found: preseq [2024-07-23 13:54:13,109] multiqc [DEBUG ] No samples found: quast [2024-07-23 13:54:13,113] multiqc [DEBUG ] No samples found: qorts [2024-07-23 13:54:13,118] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-23 13:54:13,122] multiqc [DEBUG ] No samples found: rockhopper [2024-07-23 13:54:13,127] multiqc [DEBUG ] No samples found: rsem [2024-07-23 13:54:13,143] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-07-23 13:54:13,150] multiqc [DEBUG ] No samples found: busco [2024-07-23 13:54:13,155] multiqc [DEBUG ] No samples found: bustools [2024-07-23 13:54:13,159] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-23 13:54:13,163] multiqc [DEBUG ] No samples found: gffcompare [2024-07-23 13:54:13,167] multiqc [DEBUG ] No samples found: disambiguate [2024-07-23 13:54:13,172] multiqc [DEBUG ] No samples found: supernova [2024-07-23 13:54:13,182] multiqc [DEBUG ] No samples found: deeptools [2024-07-23 13:54:13,187] multiqc [DEBUG ] No samples found: sargasso [2024-07-23 13:54:13,191] multiqc [DEBUG ] No samples found: verifybamid [2024-07-23 13:54:13,195] multiqc [DEBUG ] No samples found: mirtrace [2024-07-23 13:54:13,199] multiqc [DEBUG ] No samples found: happy [2024-07-23 13:54:13,204] multiqc [DEBUG ] No samples found: mirtop [2024-07-23 13:54:13,208] multiqc [DEBUG ] No samples found: sambamba [2024-07-23 13:54:13,215] multiqc [DEBUG ] No samples found: homer [2024-07-23 13:54:13,219] multiqc [DEBUG ] No samples found: hops [2024-07-23 13:54:13,223] multiqc [DEBUG ] No samples found: macs2 [2024-07-23 13:54:13,227] multiqc [DEBUG ] No samples found: theta2 [2024-07-23 13:54:13,231] multiqc [DEBUG ] No samples found: snpeff [2024-07-23 13:54:13,237] multiqc [DEBUG ] No samples found: gatk [2024-07-23 13:54:13,242] multiqc [DEBUG ] No samples found: htseq [2024-07-23 13:54:13,247] multiqc [DEBUG ] No samples found: bcftools [2024-07-23 13:54:13,251] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M9_sorted [2024-07-23 13:54:13,252] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M5_sorted [2024-07-23 13:54:13,252] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M8_sorted [2024-07-23 13:54:13,253] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M4_sorted [2024-07-23 13:54:13,253] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M11_sorted [2024-07-23 13:54:13,254] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M3_sorted [2024-07-23 13:54:13,254] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M10_sorted [2024-07-23 13:54:13,255] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M13_sorted [2024-07-23 13:54:13,255] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M2_sorted [2024-07-23 13:54:13,255] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M12_sorted [2024-07-23 13:54:13,256] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M1_sorted [2024-07-23 13:54:13,256] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M7_sorted [2024-07-23 13:54:13,257] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G177_M6_sorted [2024-07-23 13:54:13,257] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-07-23 13:54:13,266] multiqc [DEBUG ] No samples found: fgbio [2024-07-23 13:54:13,277] multiqc [DEBUG ] No samples found: dragen [2024-07-23 13:54:13,282] multiqc [DEBUG ] No samples found: dedup [2024-07-23 13:54:13,286] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-23 13:54:13,308] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-23 13:54:13,313] multiqc [DEBUG ] No samples found: jcvi [2024-07-23 13:54:13,318] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-23 13:54:13,391] multiqc.modules.picard.picard [INFO ] Found 13 InsertSizeMetrics reports [2024-07-23 13:54:13,401] multiqc.modules.picard.picard [INFO ] Found 13 RnaSeqMetrics reports [2024-07-23 13:54:13,406] multiqc [DEBUG ] No samples found: vep [2024-07-23 13:54:13,412] multiqc [DEBUG ] No samples found: sentieon [2024-07-23 13:54:13,417] multiqc [DEBUG ] No samples found: prokka [2024-07-23 13:54:13,421] multiqc [DEBUG ] No samples found: qc3C [2024-07-23 13:54:13,426] multiqc [DEBUG ] No samples found: nanostat [2024-07-23 13:54:13,430] multiqc [DEBUG ] No samples found: samblaster [2024-07-23 13:54:13,453] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-07-23 13:54:13,458] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-23 13:54:13,462] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-07-23 13:54:13,467] multiqc [DEBUG ] No samples found: bamtools [2024-07-23 13:54:13,472] multiqc [DEBUG ] No samples found: jellyfish [2024-07-23 13:54:13,479] multiqc [DEBUG ] No samples found: vcftools [2024-07-23 13:54:13,483] multiqc [DEBUG ] No samples found: longranger [2024-07-23 13:54:13,487] multiqc [DEBUG ] No samples found: stacks [2024-07-23 13:54:13,491] multiqc [DEBUG ] No samples found: varscan2 [2024-07-23 13:54:13,495] multiqc [DEBUG ] No samples found: snippy [2024-07-23 13:54:13,507] multiqc [DEBUG ] No samples found: bbmap [2024-07-23 13:54:13,512] multiqc [DEBUG ] No samples found: bismark [2024-07-23 13:54:13,516] multiqc [DEBUG ] No samples found: biscuit [2024-07-23 13:54:13,521] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-23 13:54:13,525] multiqc [DEBUG ] No samples found: hicup [2024-07-23 13:54:13,529] multiqc [DEBUG ] No samples found: hicpro [2024-07-23 13:54:13,533] multiqc [DEBUG ] No samples found: salmon [2024-07-23 13:54:13,537] multiqc [DEBUG ] No samples found: kallisto [2024-07-23 13:54:13,541] multiqc [DEBUG ] No samples found: slamdunk [2024-07-23 13:54:13,553] multiqc.modules.star.star [INFO ] Found 13 reports [2024-07-23 13:54:13,558] multiqc [DEBUG ] No samples found: hisat2 [2024-07-23 13:54:13,562] multiqc [DEBUG ] No samples found: tophat [2024-07-23 13:54:13,566] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-23 13:54:13,571] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-23 13:54:13,575] multiqc [DEBUG ] No samples found: snpsplit [2024-07-23 13:54:13,579] multiqc [DEBUG ] No samples found: odgi [2024-07-23 13:54:13,584] multiqc [DEBUG ] No samples found: pangolin [2024-07-23 13:54:13,590] multiqc [DEBUG ] No samples found: kat [2024-07-23 13:54:13,598] multiqc [DEBUG ] No samples found: leehom [2024-07-23 13:54:13,606] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-23 13:54:13,611] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-23 13:54:13,616] multiqc [DEBUG ] No samples found: cutadapt [2024-07-23 13:54:13,620] multiqc [DEBUG ] No samples found: flexbar [2024-07-23 13:54:13,624] multiqc [DEBUG ] No samples found: kaiju [2024-07-23 13:54:13,628] multiqc [DEBUG ] No samples found: kraken [2024-07-23 13:54:13,632] multiqc [DEBUG ] No samples found: malt [2024-07-23 13:54:13,637] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-23 13:54:13,641] multiqc [DEBUG ] No samples found: sickle [2024-07-23 13:54:13,645] multiqc [DEBUG ] No samples found: skewer [2024-07-23 13:54:13,649] multiqc [DEBUG ] No samples found: sortmerna [2024-07-23 13:54:13,654] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-23 13:54:13,658] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-23 13:54:13,662] multiqc [DEBUG ] No samples found: afterqc [2024-07-23 13:54:13,686] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,712] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,732] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,753] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,773] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,794] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,812] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,831] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,849] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,875] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,925] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,948] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,966] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-07-23 13:54:13,967] multiqc.modules.fastp.fastp [INFO ] Found 13 reports [2024-07-23 13:54:17,300] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2024-07-23 13:54:17,686] multiqc [DEBUG ] No samples found: pychopper [2024-07-23 13:54:17,691] multiqc [DEBUG ] No samples found: pycoqc [2024-07-23 13:54:17,695] multiqc [DEBUG ] No samples found: minionqc [2024-07-23 13:54:17,699] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-23 13:54:17,704] multiqc [DEBUG ] No samples found: clusterflow [2024-07-23 13:54:17,708] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-23 13:54:17,712] multiqc [DEBUG ] No samples found: bclconvert [2024-07-23 13:54:17,716] multiqc [DEBUG ] No samples found: interop [2024-07-23 13:54:17,720] multiqc [DEBUG ] No samples found: ivar [2024-07-23 13:54:17,725] multiqc [DEBUG ] No samples found: flash [2024-07-23 13:54:17,729] multiqc [DEBUG ] No samples found: seqyclean [2024-07-23 13:54:17,733] multiqc [DEBUG ] No samples found: optitype [2024-07-23 13:54:17,796] multiqc [INFO ] Compressing plot data [2024-07-23 13:54:19,226] multiqc [INFO ] Report : multiqc_report.html [2024-07-23 13:54:19,226] multiqc [INFO ] Data : multiqc_data [2024-07-23 13:54:19,226] multiqc [DEBUG ] Moving data file from '/scratch/tmpq_2v7jg1/multiqc_data' to '/projectnb/wax-dk/max/G177/Scripts/14_final_summary/G177_multiqc_report/multiqc_data' [2024-07-23 13:54:19,370] multiqc [INFO ] MultiQC complete