Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G177_M10_statistics_for_all_accepted_reads 76566772 0 8974176 0 0 0 0 0 76566772 0 100.0 nan 67592596 0 33796298 0 33796298 0 67592596 0 100.0 nan 67592596 0 0 0 0.0 nan 0 0 0 0 76566772 G177_M10_statistics_for_primary_reads 67592596 0 0 0 0 0 0 0 67592596 0 100.0 nan 67592596 0 33796298 0 33796298 0 67592596 0 100.0 nan 67592596 0 0 0 0.0 nan 0 0 0 0 67592596 G177_M10_statistics_for_primary_unique_reads 63495508 0 0 0 0 0 0 0 63495508 0 100.0 nan 63495508 0 31747754 0 31747754 0 63495508 0 100.0 nan 63495508 0 0 0 0.0 nan 0 0 0 0 63495508 G177_M11_statistics_for_all_accepted_reads 73044626 0 7311190 0 0 0 0 0 73044626 0 100.0 nan 65733436 0 32866718 0 32866718 0 65733436 0 100.0 nan 65733436 0 0 0 0.0 nan 0 0 0 0 73044626 G177_M11_statistics_for_primary_reads 65733436 0 0 0 0 0 0 0 65733436 0 100.0 nan 65733436 0 32866718 0 32866718 0 65733436 0 100.0 nan 65733436 0 0 0 0.0 nan 0 0 0 0 65733436 G177_M11_statistics_for_primary_unique_reads 62140694 0 0 0 0 0 0 0 62140694 0 100.0 nan 62140694 0 31070347 0 31070347 0 62140694 0 100.0 nan 62140694 0 0 0 0.0 nan 0 0 0 0 62140694 G177_M12_statistics_for_all_accepted_reads 55000550 0 5670298 0 0 0 0 0 55000550 0 100.0 nan 49330252 0 24665126 0 24665126 0 49330252 0 100.0 nan 49330252 0 0 0 0.0 nan 0 0 0 0 55000550 G177_M12_statistics_for_primary_reads 49330252 0 0 0 0 0 0 0 49330252 0 100.0 nan 49330252 0 24665126 0 24665126 0 49330252 0 100.0 nan 49330252 0 0 0 0.0 nan 0 0 0 0 49330252 G177_M12_statistics_for_primary_unique_reads 46569402 0 0 0 0 0 0 0 46569402 0 100.0 nan 46569402 0 23284701 0 23284701 0 46569402 0 100.0 nan 46569402 0 0 0 0.0 nan 0 0 0 0 46569402 G177_M13_statistics_for_all_accepted_reads 48028774 0 5233018 0 0 0 0 0 48028774 0 100.0 nan 42795756 0 21397878 0 21397878 0 42795756 0 100.0 nan 42795756 0 0 0 0.0 nan 0 0 0 0 48028774 G177_M13_statistics_for_primary_reads 42795756 0 0 0 0 0 0 0 42795756 0 100.0 nan 42795756 0 21397878 0 21397878 0 42795756 0 100.0 nan 42795756 0 0 0 0.0 nan 0 0 0 0 42795756 G177_M13_statistics_for_primary_unique_reads 40437372 0 0 0 0 0 0 0 40437372 0 100.0 nan 40437372 0 20218686 0 20218686 0 40437372 0 100.0 nan 40437372 0 0 0 0.0 nan 0 0 0 0 40437372 G177_M1_statistics_for_all_accepted_reads 73763450 0 7372052 0 0 0 0 0 73763450 0 100.0 nan 66391398 0 33195699 0 33195699 0 66391398 0 100.0 nan 66391398 0 0 0 0.0 nan 0 0 0 0 73763450 G177_M1_statistics_for_primary_reads 66391398 0 0 0 0 0 0 0 66391398 0 100.0 nan 66391398 0 33195699 0 33195699 0 66391398 0 100.0 nan 66391398 0 0 0 0.0 nan 0 0 0 0 66391398 G177_M1_statistics_for_primary_unique_reads 62810028 0 0 0 0 0 0 0 62810028 0 100.0 nan 62810028 0 31405014 0 31405014 0 62810028 0 100.0 nan 62810028 0 0 0 0.0 nan 0 0 0 0 62810028 G177_M2_statistics_for_all_accepted_reads 71758252 0 7807666 0 0 0 0 0 71758252 0 100.0 nan 63950586 0 31975293 0 31975293 0 63950586 0 100.0 nan 63950586 0 0 0 0.0 nan 0 0 0 0 71758252 G177_M2_statistics_for_primary_reads 63950586 0 0 0 0 0 0 0 63950586 0 100.0 nan 63950586 0 31975293 0 31975293 0 63950586 0 100.0 nan 63950586 0 0 0 0.0 nan 0 0 0 0 63950586 G177_M2_statistics_for_primary_unique_reads 60201902 0 0 0 0 0 0 0 60201902 0 100.0 nan 60201902 0 30100951 0 30100951 0 60201902 0 100.0 nan 60201902 0 0 0 0.0 nan 0 0 0 0 60201902 G177_M3_statistics_for_all_accepted_reads 52251756 0 5704742 0 0 0 0 0 52251756 0 100.0 nan 46547014 0 23273507 0 23273507 0 46547014 0 100.0 nan 46547014 0 0 0 0.0 nan 0 0 0 0 52251756 G177_M3_statistics_for_primary_reads 46547014 0 0 0 0 0 0 0 46547014 0 100.0 nan 46547014 0 23273507 0 23273507 0 46547014 0 100.0 nan 46547014 0 0 0 0.0 nan 0 0 0 0 46547014 G177_M3_statistics_for_primary_unique_reads 43879346 0 0 0 0 0 0 0 43879346 0 100.0 nan 43879346 0 21939673 0 21939673 0 43879346 0 100.0 nan 43879346 0 0 0 0.0 nan 0 0 0 0 43879346 G177_M4_statistics_for_all_accepted_reads 58042136 0 6963778 0 0 0 0 0 58042136 0 100.0 nan 51078358 0 25539179 0 25539179 0 51078358 0 100.0 nan 51078358 0 0 0 0.0 nan 0 0 0 0 58042136 G177_M4_statistics_for_primary_reads 51078358 0 0 0 0 0 0 0 51078358 0 100.0 nan 51078358 0 25539179 0 25539179 0 51078358 0 100.0 nan 51078358 0 0 0 0.0 nan 0 0 0 0 51078358 G177_M4_statistics_for_primary_unique_reads 47828378 0 0 0 0 0 0 0 47828378 0 100.0 nan 47828378 0 23914189 0 23914189 0 47828378 0 100.0 nan 47828378 0 0 0 0.0 nan 0 0 0 0 47828378 G177_M5_statistics_for_all_accepted_reads 63214192 0 7348696 0 0 0 0 0 63214192 0 100.0 nan 55865496 0 27932748 0 27932748 0 55865496 0 100.0 nan 55865496 0 0 0 0.0 nan 0 0 0 0 63214192 G177_M5_statistics_for_primary_reads 55865496 0 0 0 0 0 0 0 55865496 0 100.0 nan 55865496 0 27932748 0 27932748 0 55865496 0 100.0 nan 55865496 0 0 0 0.0 nan 0 0 0 0 55865496 G177_M5_statistics_for_primary_unique_reads 52453994 0 0 0 0 0 0 0 52453994 0 100.0 nan 52453994 0 26226997 0 26226997 0 52453994 0 100.0 nan 52453994 0 0 0 0.0 nan 0 0 0 0 52453994 G177_M6_statistics_for_all_accepted_reads 62131206 0 6749182 0 0 0 0 0 62131206 0 100.0 nan 55382024 0 27691012 0 27691012 0 55382024 0 100.0 nan 55382024 0 0 0 0.0 nan 0 0 0 0 62131206 G177_M6_statistics_for_primary_reads 55382024 0 0 0 0 0 0 0 55382024 0 100.0 nan 55382024 0 27691012 0 27691012 0 55382024 0 100.0 nan 55382024 0 0 0 0.0 nan 0 0 0 0 55382024 G177_M6_statistics_for_primary_unique_reads 52134840 0 0 0 0 0 0 0 52134840 0 100.0 nan 52134840 0 26067420 0 26067420 0 52134840 0 100.0 nan 52134840 0 0 0 0.0 nan 0 0 0 0 52134840 G177_M7_statistics_for_all_accepted_reads 59597752 0 6006820 0 0 0 0 0 59597752 0 100.0 nan 53590932 0 26795466 0 26795466 0 53590932 0 100.0 nan 53590932 0 0 0 0.0 nan 0 0 0 0 59597752 G177_M7_statistics_for_primary_reads 53590932 0 0 0 0 0 0 0 53590932 0 100.0 nan 53590932 0 26795466 0 26795466 0 53590932 0 100.0 nan 53590932 0 0 0 0.0 nan 0 0 0 0 53590932 G177_M7_statistics_for_primary_unique_reads 50716996 0 0 0 0 0 0 0 50716996 0 100.0 nan 50716996 0 25358498 0 25358498 0 50716996 0 100.0 nan 50716996 0 0 0 0.0 nan 0 0 0 0 50716996 G177_M8_statistics_for_all_accepted_reads 54538354 0 5358352 0 0 0 0 0 54538354 0 100.0 nan 49180002 0 24590001 0 24590001 0 49180002 0 100.0 nan 49180002 0 0 0 0.0 nan 0 0 0 0 54538354 G177_M8_statistics_for_primary_reads 49180002 0 0 0 0 0 0 0 49180002 0 100.0 nan 49180002 0 24590001 0 24590001 0 49180002 0 100.0 nan 49180002 0 0 0 0.0 nan 0 0 0 0 49180002 G177_M8_statistics_for_primary_unique_reads 46672864 0 0 0 0 0 0 0 46672864 0 100.0 nan 46672864 0 23336432 0 23336432 0 46672864 0 100.0 nan 46672864 0 0 0 0.0 nan 0 0 0 0 46672864 G177_M9_statistics_for_all_accepted_reads 31128480 0 2797194 0 0 0 0 0 31128480 0 100.0 nan 28331286 0 14165643 0 14165643 0 28331286 0 100.0 nan 28331286 0 0 0 0.0 nan 0 0 0 0 31128480 G177_M9_statistics_for_primary_reads 28331286 0 0 0 0 0 0 0 28331286 0 100.0 nan 28331286 0 14165643 0 14165643 0 28331286 0 100.0 nan 28331286 0 0 0 0.0 nan 0 0 0 0 28331286 G177_M9_statistics_for_primary_unique_reads 26921024 0 0 0 0 0 0 0 26921024 0 100.0 nan 26921024 0 13460512 0 13460512 0 26921024 0 100.0 nan 26921024 0 0 0 0.0 nan 0 0 0 0 26921024