[2024-07-23 13:07:16,274] multiqc [DEBUG ] This is MultiQC v1.11 [2024-07-23 13:07:16,274] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-07-23 13:07:16,274] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-07-23 13:07:16,274] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-23 13:07:16,275] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-07-23 13:07:16,275] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-07-23 13:07:16,276] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G178/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/06_CollectMetrics/ [2024-07-23 13:07:16,907] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-23 13:07:16,907] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G174_G178_2024/G178/SAMPLES /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/06_CollectMetrics/ [2024-07-23 13:07:16,926] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/14_final_summary/G178_multiqc_report [2024-07-23 13:07:16,926] multiqc [DEBUG ] Template : default [2024-07-23 13:07:16,926] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-07-23 13:07:16,927] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-07-23 13:07:16,927] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp155g_hrh [2024-07-23 13:07:17,006] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G178/SAMPLES [2024-07-23 13:07:17,006] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/03_FASTQC [2024-07-23 13:07:17,006] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/06_CollectMetrics [2024-07-23 13:07:17,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M9_CKDL200148791-1a-AK4986-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:17,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M9_CKDL200148791-1a-AK4986-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:17,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,209] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,210] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:17,231] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,095] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,098] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,098] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,099] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,103] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,103] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,123] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M9_featureCounts.out [2024-07-23 13:07:18,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M10_CKDL200148791-1a-AK4986-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:18,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M10_CKDL200148791-1a-AK4986-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:19,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,108] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,108] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,112] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,112] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,113] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,113] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,113] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,113] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,113] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,133] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,968] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:19,987] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M10_featureCounts.out [2024-07-23 13:07:20,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M12_CKDL200148791-1a-AK4986-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:20,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M12_CKDL200148791-1a-AK4986-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:20,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,957] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,957] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,961] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:20,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,904] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,904] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,909] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,909] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,926] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,926] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,926] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,926] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,927] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:21,946] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M12_featureCounts.out [2024-07-23 13:07:22,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M11_CKDL200148791-1a-AK4986-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:22,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M11_CKDL200148791-1a-AK4986-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:23,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,016] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,017] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,017] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,017] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,017] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,017] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,037] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:23,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:24,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M11_featureCounts.out [2024-07-23 13:07:24,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M13_CKDL200148791-1a-AK4986-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:24,928] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M13_CKDL200148791-1a-AK4986-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:25,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,040] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,044] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,045] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,045] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,045] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,045] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,045] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:25,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,033] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,033] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,033] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:26,053] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M13_featureCounts.out [2024-07-23 13:07:27,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M5_CKDL200148791-1a-AK7209-AK7216_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:27,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M5_CKDL200148791-1a-AK7209-AK7216_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:27,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,128] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,133] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:27,153] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,035] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,036] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,040] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,040] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,040] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,061] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M5_featureCounts.out [2024-07-23 13:07:28,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M1_CKDL200148791-1a-AK7209-AK7212_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:28,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M1_CKDL200148791-1a-AK7209-AK7212_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:29,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,037] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,041] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,042] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,062] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,960] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:29,989] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M1_featureCounts.out [2024-07-23 13:07:30,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M6_CKDL200148791-1a-AK7209-AK7217_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:30,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M6_CKDL200148791-1a-AK7209-AK7217_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:31,044] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,047] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:31,072] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,055] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:32,073] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M6_featureCounts.out [2024-07-23 13:07:33,023] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M2_CKDL200148791-1a-AK7209-AK7213_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:33,026] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M2_CKDL200148791-1a-AK7209-AK7213_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:33,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,115] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,119] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:33,139] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,033] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,038] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,039] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M2_featureCounts.out [2024-07-23 13:07:34,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M7_CKDL200148791-1a-AK4986-AK7210_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:34,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M7_CKDL200148791-1a-AK4986-AK7210_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:35,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,065] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:35,085] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,031] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,031] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,031] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:36,050] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M7_featureCounts.out [2024-07-23 13:07:37,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M3_CKDL200148791-1a-AK7209-AK7214_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:37,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M3_CKDL200148791-1a-AK7209-AK7214_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:37,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,127] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,127] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,131] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,132] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:37,156] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,074] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,074] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,074] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,074] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,074] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,075] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,075] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,095] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M3_featureCounts.out [2024-07-23 13:07:38,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M8_CKDL200148791-1a-AK4986-AK7211_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:38,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M8_CKDL200148791-1a-AK4986-AK7211_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:39,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:39,122] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:40,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M8_featureCounts.out [2024-07-23 13:07:41,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M4_CKDL200148791-1a-AK7209-AK7215_HTMC7DSXX_L1_2.fq.gz [2024-07-23 13:07:41,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G178_M4_CKDL200148791-1a-AK7209-AK7215_HTMC7DSXX_L1_1.fq.gz [2024-07-23 13:07:41,151] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,159] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:41,179] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,075] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,096] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G178_M4_featureCounts.out [2024-07-23 13:07:42,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:42,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:42,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:42,984] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:07:42,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:07:42,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:07:43,004] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 13:07:43,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 13:07:43,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:07:43,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:07:43,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:07:43,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:07:43,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-07-23 13:07:43,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 13:07:43,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-07-23 13:07:43,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:43,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:43,119] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:43,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:43,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-07-23 13:07:43,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 13:07:43,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 13:07:43,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 13:07:43,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 13:07:43,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-07-23 13:07:43,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:07:43,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:07:43,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-07-23 13:07:43,178] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 13:07:43,179] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-07-23 13:07:43,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,221] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,221] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,221] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,222] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,222] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:43,222] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-07-23 13:07:44,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:07:44,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:07:44,023] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:07:44,023] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:07:44,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-07-23 13:07:44,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:07:44,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:07:44,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:07:44,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:07:44,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-07-23 13:07:44,488] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 13:07:44,489] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-07-23 13:07:44,491] multiqc [DEBUG ] No samples found: custom_content [2024-07-23 13:07:44,496] multiqc [DEBUG ] No samples found: ccs [2024-07-23 13:07:44,501] multiqc [DEBUG ] No samples found: ngsderive [2024-07-23 13:07:44,505] multiqc [DEBUG ] No samples found: purple [2024-07-23 13:07:44,510] multiqc [DEBUG ] No samples found: conpair [2024-07-23 13:07:44,515] multiqc [DEBUG ] No samples found: lima [2024-07-23 13:07:44,520] multiqc [DEBUG ] No samples found: peddy [2024-07-23 13:07:44,524] multiqc [DEBUG ] No samples found: somalier [2024-07-23 13:07:44,529] multiqc [DEBUG ] No samples found: methylQA [2024-07-23 13:07:44,539] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-07-23 13:07:44,539] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-07-23 13:07:44,539] multiqc [DEBUG ] No samples found: mosdepth [2024-07-23 13:07:44,546] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-23 13:07:44,550] multiqc [DEBUG ] No samples found: qualimap [2024-07-23 13:07:44,555] multiqc [DEBUG ] No samples found: preseq [2024-07-23 13:07:44,559] multiqc [DEBUG ] No samples found: quast [2024-07-23 13:07:44,565] multiqc [DEBUG ] No samples found: qorts [2024-07-23 13:07:44,571] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-23 13:07:44,576] multiqc [DEBUG ] No samples found: rockhopper [2024-07-23 13:07:44,581] multiqc [DEBUG ] No samples found: rsem [2024-07-23 13:07:44,609] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2024-07-23 13:07:44,616] multiqc [DEBUG ] No samples found: busco [2024-07-23 13:07:44,621] multiqc [DEBUG ] No samples found: bustools [2024-07-23 13:07:44,625] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-23 13:07:44,629] multiqc [DEBUG ] No samples found: gffcompare [2024-07-23 13:07:44,634] multiqc [DEBUG ] No samples found: disambiguate [2024-07-23 13:07:44,638] multiqc [DEBUG ] No samples found: supernova [2024-07-23 13:07:44,649] multiqc [DEBUG ] No samples found: deeptools [2024-07-23 13:07:44,654] multiqc [DEBUG ] No samples found: sargasso [2024-07-23 13:07:44,658] multiqc [DEBUG ] No samples found: verifybamid [2024-07-23 13:07:44,663] multiqc [DEBUG ] No samples found: mirtrace [2024-07-23 13:07:44,667] multiqc [DEBUG ] No samples found: happy [2024-07-23 13:07:44,672] multiqc [DEBUG ] No samples found: mirtop [2024-07-23 13:07:44,677] multiqc [DEBUG ] No samples found: sambamba [2024-07-23 13:07:44,683] multiqc [DEBUG ] No samples found: homer [2024-07-23 13:07:44,687] multiqc [DEBUG ] No samples found: hops [2024-07-23 13:07:44,691] multiqc [DEBUG ] No samples found: macs2 [2024-07-23 13:07:44,695] multiqc [DEBUG ] No samples found: theta2 [2024-07-23 13:07:44,700] multiqc [DEBUG ] No samples found: snpeff [2024-07-23 13:07:44,706] multiqc [DEBUG ] No samples found: gatk [2024-07-23 13:07:44,711] multiqc [DEBUG ] No samples found: htseq [2024-07-23 13:07:44,716] multiqc [DEBUG ] No samples found: bcftools [2024-07-23 13:07:44,720] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M9_sorted [2024-07-23 13:07:44,721] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M10_sorted [2024-07-23 13:07:44,721] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M12_sorted [2024-07-23 13:07:44,722] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M11_sorted [2024-07-23 13:07:44,722] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M13_sorted [2024-07-23 13:07:44,723] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M5_sorted [2024-07-23 13:07:44,723] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M1_sorted [2024-07-23 13:07:44,724] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M6_sorted [2024-07-23 13:07:44,724] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M2_sorted [2024-07-23 13:07:44,725] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M7_sorted [2024-07-23 13:07:44,725] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M3_sorted [2024-07-23 13:07:44,726] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M8_sorted [2024-07-23 13:07:44,726] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G178_M4_sorted [2024-07-23 13:07:44,726] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2024-07-23 13:07:44,736] multiqc [DEBUG ] No samples found: fgbio [2024-07-23 13:07:44,747] multiqc [DEBUG ] No samples found: dragen [2024-07-23 13:07:44,751] multiqc [DEBUG ] No samples found: dedup [2024-07-23 13:07:44,755] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-23 13:07:44,777] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-23 13:07:44,782] multiqc [DEBUG ] No samples found: jcvi [2024-07-23 13:07:44,786] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-23 13:07:44,789] multiqc [DEBUG ] No samples found: picard [2024-07-23 13:07:44,794] multiqc [DEBUG ] No samples found: vep [2024-07-23 13:07:44,801] multiqc [DEBUG ] No samples found: sentieon [2024-07-23 13:07:44,805] multiqc [DEBUG ] No samples found: prokka [2024-07-23 13:07:44,810] multiqc [DEBUG ] No samples found: qc3C [2024-07-23 13:07:44,814] multiqc [DEBUG ] No samples found: nanostat [2024-07-23 13:07:44,818] multiqc [DEBUG ] No samples found: samblaster [2024-07-23 13:07:44,842] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2024-07-23 13:07:44,847] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-23 13:07:44,851] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-07-23 13:07:44,856] multiqc [DEBUG ] No samples found: bamtools [2024-07-23 13:07:44,861] multiqc [DEBUG ] No samples found: jellyfish [2024-07-23 13:07:44,868] multiqc [DEBUG ] No samples found: vcftools [2024-07-23 13:07:44,872] multiqc [DEBUG ] No samples found: longranger [2024-07-23 13:07:44,877] multiqc [DEBUG ] No samples found: stacks [2024-07-23 13:07:44,881] multiqc [DEBUG ] No samples found: varscan2 [2024-07-23 13:07:44,886] multiqc [DEBUG ] No samples found: snippy [2024-07-23 13:07:44,898] multiqc [DEBUG ] No samples found: bbmap [2024-07-23 13:07:44,902] multiqc [DEBUG ] No samples found: bismark [2024-07-23 13:07:44,907] multiqc [DEBUG ] No samples found: biscuit [2024-07-23 13:07:44,911] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-23 13:07:44,915] multiqc [DEBUG ] No samples found: hicup [2024-07-23 13:07:44,919] multiqc [DEBUG ] No samples found: hicpro [2024-07-23 13:07:44,924] multiqc [DEBUG ] No samples found: salmon [2024-07-23 13:07:44,928] multiqc [DEBUG ] No samples found: kallisto [2024-07-23 13:07:44,933] multiqc [DEBUG ] No samples found: slamdunk [2024-07-23 13:07:44,946] multiqc.modules.star.star [INFO ] Found 13 reports [2024-07-23 13:07:44,950] multiqc [DEBUG ] No samples found: hisat2 [2024-07-23 13:07:44,955] multiqc [DEBUG ] No samples found: tophat [2024-07-23 13:07:44,959] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-23 13:07:44,963] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-23 13:07:44,968] multiqc [DEBUG ] No samples found: snpsplit [2024-07-23 13:07:44,973] multiqc [DEBUG ] No samples found: odgi [2024-07-23 13:07:44,977] multiqc [DEBUG ] No samples found: pangolin [2024-07-23 13:07:44,981] multiqc [DEBUG ] No samples found: kat [2024-07-23 13:07:44,986] multiqc [DEBUG ] No samples found: leehom [2024-07-23 13:07:44,991] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-23 13:07:44,996] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-23 13:07:45,000] multiqc [DEBUG ] No samples found: cutadapt [2024-07-23 13:07:45,005] multiqc [DEBUG ] No samples found: flexbar [2024-07-23 13:07:45,009] multiqc [DEBUG ] No samples found: kaiju [2024-07-23 13:07:45,014] multiqc [DEBUG ] No samples found: kraken [2024-07-23 13:07:45,019] multiqc [DEBUG ] No samples found: malt [2024-07-23 13:07:45,024] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-23 13:07:45,028] multiqc [DEBUG ] No samples found: sickle [2024-07-23 13:07:45,032] multiqc [DEBUG ] No samples found: skewer [2024-07-23 13:07:45,037] multiqc [DEBUG ] No samples found: sortmerna [2024-07-23 13:07:45,042] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-23 13:07:45,047] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-23 13:07:45,051] multiqc [DEBUG ] No samples found: afterqc [2024-07-23 13:07:45,056] multiqc [DEBUG ] No samples found: fastp [2024-07-23 13:07:45,060] multiqc [DEBUG ] No samples found: fastqc [2024-07-23 13:07:45,065] multiqc [DEBUG ] No samples found: pychopper [2024-07-23 13:07:45,072] multiqc [DEBUG ] No samples found: pycoqc [2024-07-23 13:07:45,078] multiqc [DEBUG ] No samples found: minionqc [2024-07-23 13:07:45,082] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-23 13:07:45,086] multiqc [DEBUG ] No samples found: clusterflow [2024-07-23 13:07:45,091] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-23 13:07:45,095] multiqc [DEBUG ] No samples found: bclconvert [2024-07-23 13:07:45,101] multiqc [DEBUG ] No samples found: interop [2024-07-23 13:07:45,106] multiqc [DEBUG ] No samples found: ivar [2024-07-23 13:07:45,111] multiqc [DEBUG ] No samples found: flash [2024-07-23 13:07:45,115] multiqc [DEBUG ] No samples found: seqyclean [2024-07-23 13:07:45,120] multiqc [DEBUG ] No samples found: optitype [2024-07-23 13:07:45,145] multiqc [INFO ] Compressing plot data [2024-07-23 13:07:45,174] multiqc [INFO ] Report : multiqc_report.html [2024-07-23 13:07:45,174] multiqc [INFO ] Data : multiqc_data [2024-07-23 13:07:45,174] multiqc [DEBUG ] Moving data file from '/scratch/tmp155g_hrh/multiqc_data' to '/projectnb/wax-dk/max/G174_G178_2024/G178/Scripts/14_final_summary/G178_multiqc_report/multiqc_data' [2024-07-23 13:07:45,270] multiqc [INFO ] MultiQC complete