[2025-03-17 14:02:31,074] multiqc [DEBUG ] This is MultiQC v1.11 [2025-03-17 14:02:31,074] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-03-17 14:02:31,075] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-03-17 14:02:31,075] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-03-17 14:02:31,077] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-03-17 14:02:31,077] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-03-17 14:02:31,078] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-03-17 14:02:31,078] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G192_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/06_CollectMetrics/ [2025-03-17 14:02:31,631] multiqc [WARNING] MultiQC Version v1.27.1 now available! [2025-03-17 14:02:31,631] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G192_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/06_CollectMetrics/ [2025-03-17 14:02:31,631] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G192_RNASEQ/Scripts/99_final_summary/G192_RNASEQ_multiqc_report [2025-03-17 14:02:31,631] multiqc [DEBUG ] Template : default [2025-03-17 14:02:31,631] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-03-17 14:02:31,632] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-03-17 14:02:31,632] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpzq0x8ywf [2025-03-17 14:02:32,005] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G192_RNASEQ/SAMPLES [2025-03-17 14:02:32,005] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/03_FASTQC [2025-03-17 14:02:32,005] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G192_RNASEQ/Scripts/06_CollectMetrics [2025-03-17 14:02:32,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M33_2.fq.gz [2025-03-17 14:02:32,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M33_1.fq.gz [2025-03-17 14:02:32,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,332] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,332] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,338] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:32,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,280] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,281] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:33,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M33_featureCounts.out [2025-03-17 14:02:34,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M31_1.fq.gz [2025-03-17 14:02:34,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M31_2.fq.gz [2025-03-17 14:02:34,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,310] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,310] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,311] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,311] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,311] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,311] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,311] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:34,332] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,234] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,238] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:35,257] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M31_featureCounts.out [2025-03-17 14:02:36,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M18_2.fq.gz [2025-03-17 14:02:36,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M18_1.fq.gz [2025-03-17 14:02:36,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,203] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,208] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:36,228] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,143] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:37,165] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M18_featureCounts.out [2025-03-17 14:02:38,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M6_2.fq.gz [2025-03-17 14:02:38,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M6_1.fq.gz [2025-03-17 14:02:38,133] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,137] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:38,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M06_SJ.out.tab [2025-03-17 14:02:40,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,262] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,267] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,267] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,267] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,267] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,267] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,268] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,268] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:40,288] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,228] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,228] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,228] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,228] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,228] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:41,253] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M06_featureCounts.out [2025-03-17 14:02:42,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M4_1.fq.gz [2025-03-17 14:02:42,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M4_2.fq.gz [2025-03-17 14:02:42,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,232] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:42,237] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M04_SJ.out.tab [2025-03-17 14:02:44,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:44,217] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,155] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:45,175] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M04_featureCounts.out [2025-03-17 14:02:46,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M27_1.fq.gz [2025-03-17 14:02:46,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M27_2.fq.gz [2025-03-17 14:02:46,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,095] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:46,116] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,033] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,033] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,033] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,053] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M27_featureCounts.out [2025-03-17 14:02:47,964] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M25_2.fq.gz [2025-03-17 14:02:47,964] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M25_1.fq.gz [2025-03-17 14:02:48,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,031] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,031] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,031] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,031] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,052] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,976] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:48,997] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M25_featureCounts.out [2025-03-17 14:02:49,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M13_1.fq.gz [2025-03-17 14:02:49,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M13_2.fq.gz [2025-03-17 14:02:49,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,953] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,953] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,953] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:49,974] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,872] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:50,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M13_featureCounts.out [2025-03-17 14:02:51,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M1_1.fq.gz [2025-03-17 14:02:51,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M1_2.fq.gz [2025-03-17 14:02:51,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,846] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,850] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:51,851] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M01_SJ.out.tab [2025-03-17 14:02:53,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,726] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,731] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,731] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,731] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,731] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,731] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,732] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,732] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:53,751] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,653] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,658] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,658] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,659] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,659] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,659] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,659] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:54,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M01_featureCounts.out [2025-03-17 14:02:55,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M34_2.fq.gz [2025-03-17 14:02:55,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M34_1.fq.gz [2025-03-17 14:02:55,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:55,626] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:56,568] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M34_featureCounts.out [2025-03-17 14:02:57,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M22_2.fq.gz [2025-03-17 14:02:57,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M22_1.fq.gz [2025-03-17 14:02:57,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,542] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,542] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,542] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,542] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,543] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,543] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,543] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:57,564] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,486] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:58,507] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M22_featureCounts.out [2025-03-17 14:02:59,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M20_2.fq.gz [2025-03-17 14:02:59,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M20_1.fq.gz [2025-03-17 14:02:59,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:02:59,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,426] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,430] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,430] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,431] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:00,452] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M20_featureCounts.out [2025-03-17 14:03:01,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M19_2.fq.gz [2025-03-17 14:03:01,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M19_1.fq.gz [2025-03-17 14:03:01,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:01,447] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:02,378] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M19_featureCounts.out [2025-03-17 14:03:03,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M9_2.fq.gz [2025-03-17 14:03:03,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M9_1.fq.gz [2025-03-17 14:03:03,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,417] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:03,423] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M09_SJ.out.tab [2025-03-17 14:03:05,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,704] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,704] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,705] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,705] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:05,726] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,632] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:06,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M09_featureCounts.out [2025-03-17 14:03:07,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M7_1.fq.gz [2025-03-17 14:03:07,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M7_2.fq.gz [2025-03-17 14:03:07,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:07,675] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M07_SJ.out.tab [2025-03-17 14:03:09,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,538] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:09,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,484] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:10,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M07_featureCounts.out [2025-03-17 14:03:11,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M28_2.fq.gz [2025-03-17 14:03:11,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M28_1.fq.gz [2025-03-17 14:03:11,478] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,486] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,487] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,487] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,487] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,487] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,487] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:11,508] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,442] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,450] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:12,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M28_featureCounts.out [2025-03-17 14:03:13,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M16_2.fq.gz [2025-03-17 14:03:13,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M16_1.fq.gz [2025-03-17 14:03:13,482] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,485] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:13,513] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:14,572] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M16_featureCounts.out [2025-03-17 14:03:15,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M14_1.fq.gz [2025-03-17 14:03:15,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M14_2.fq.gz [2025-03-17 14:03:15,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,560] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,561] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:15,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:16,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M14_featureCounts.out [2025-03-17 14:03:17,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M2_1.fq.gz [2025-03-17 14:03:17,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M2_2.fq.gz [2025-03-17 14:03:17,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,561] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,561] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:17,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M02_SJ.out.tab [2025-03-17 14:03:19,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,497] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,502] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,503] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:19,528] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,436] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,444] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,444] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,445] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,445] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:20,467] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M02_featureCounts.out [2025-03-17 14:03:21,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M23_1.fq.gz [2025-03-17 14:03:21,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M23_2.fq.gz [2025-03-17 14:03:21,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,452] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,453] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,453] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,453] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,453] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,453] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:21,473] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,409] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:22,430] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M23_featureCounts.out [2025-03-17 14:03:23,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M21_2.fq.gz [2025-03-17 14:03:23,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M21_1.fq.gz [2025-03-17 14:03:23,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,388] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,388] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,388] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,388] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,389] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,389] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,389] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:23,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,332] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,338] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:24,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M21_featureCounts.out [2025-03-17 14:03:25,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M11_1.fq.gz [2025-03-17 14:03:25,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M11_2.fq.gz [2025-03-17 14:03:25,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,331] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,332] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:25,359] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,277] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,277] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,277] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,281] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:26,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M11_featureCounts.out [2025-03-17 14:03:27,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M32_1.fq.gz [2025-03-17 14:03:27,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M32_2.fq.gz [2025-03-17 14:03:27,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,297] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,297] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,297] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,297] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,297] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:27,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,240] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,240] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,241] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,241] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:28,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M32_featureCounts.out [2025-03-17 14:03:29,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M30_2.fq.gz [2025-03-17 14:03:29,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M30_1.fq.gz [2025-03-17 14:03:29,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,246] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:29,268] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,189] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:30,210] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M30_featureCounts.out [2025-03-17 14:03:31,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M8_2.fq.gz [2025-03-17 14:03:31,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M8_1.fq.gz [2025-03-17 14:03:31,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,205] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,205] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,206] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,206] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,206] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,206] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,206] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:31,238] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M08_SJ.out.tab [2025-03-17 14:03:32,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:32,813] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,744] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:33,765] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M08_featureCounts.out [2025-03-17 14:03:34,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M29_2.fq.gz [2025-03-17 14:03:34,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M29_1.fq.gz [2025-03-17 14:03:34,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:34,780] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,722] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,722] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,722] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,722] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,722] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:35,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M29_featureCounts.out [2025-03-17 14:03:36,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M17_1.fq.gz [2025-03-17 14:03:36,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M17_2.fq.gz [2025-03-17 14:03:36,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,720] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,725] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,725] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:36,747] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,749] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,749] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,750] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,750] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,750] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,750] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,750] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:37,771] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M17_featureCounts.out [2025-03-17 14:03:38,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M15_1.fq.gz [2025-03-17 14:03:38,686] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M15_2.fq.gz [2025-03-17 14:03:38,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,770] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,775] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,775] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,775] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:38,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:39,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M15_featureCounts.out [2025-03-17 14:03:40,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M5_1.fq.gz [2025-03-17 14:03:40,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M5_2.fq.gz [2025-03-17 14:03:40,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,761] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,761] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:40,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M05_SJ.out.tab [2025-03-17 14:03:42,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,684] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,684] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,688] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:42,708] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,643] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,647] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,647] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,647] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:43,668] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M05_featureCounts.out [2025-03-17 14:03:44,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M3_2.fq.gz [2025-03-17 14:03:44,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M3_1.fq.gz [2025-03-17 14:03:44,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,633] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,633] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:44,634] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M03_SJ.out.tab [2025-03-17 14:03:46,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,649] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,650] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:46,676] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,580] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,580] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,580] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,580] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,580] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:47,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M03_featureCounts.out [2025-03-17 14:03:48,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M26_1.fq.gz [2025-03-17 14:03:48,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M26_2.fq.gz [2025-03-17 14:03:48,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:48,608] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,533] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:49,554] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M26_featureCounts.out [2025-03-17 14:03:50,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M24_2.fq.gz [2025-03-17 14:03:50,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M24_1.fq.gz [2025-03-17 14:03:50,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,493] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,493] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,498] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,499] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:50,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,420] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,429] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:51,451] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M24_featureCounts.out [2025-03-17 14:03:52,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M12_1.fq.gz [2025-03-17 14:03:52,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M12_2.fq.gz [2025-03-17 14:03:52,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:52,505] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:53,447] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M12_featureCounts.out [2025-03-17 14:03:54,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M10_2.fq.gz [2025-03-17 14:03:54,349] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G192M10_1.fq.gz [2025-03-17 14:03:54,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,436] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:54,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,418] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:55,440] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G192_M10_featureCounts.out [2025-03-17 14:03:56,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-03-17 14:03:56,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-03-17 14:03:56,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-03-17 14:03:56,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-03-17 14:03:56,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-03-17 14:03:56,384] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-03-17 14:03:56,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-03-17 14:03:56,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-03-17 14:03:56,402] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-03-17 14:03:56,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-03-17 14:03:56,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-03-17 14:03:56,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-03-17 14:03:56,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-03-17 14:03:56,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-03-17 14:03:56,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-03-17 14:03:56,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-03-17 14:03:56,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-03-17 14:03:56,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-03-17 14:03:56,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-03-17 14:03:56,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,713] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:56,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-03-17 14:03:57,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-03-17 14:03:57,454] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-03-17 14:03:57,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-03-17 14:03:57,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-03-17 14:03:57,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-03-17 14:03:57,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-03-17 14:03:57,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-03-17 14:03:57,527] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-03-17 14:03:57,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-03-17 14:03:57,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-03-17 14:04:01,317] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-03-17 14:04:01,351] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-03-17 14:04:01,355] multiqc [DEBUG ] No samples found: custom_content [2025-03-17 14:04:01,369] multiqc [DEBUG ] No samples found: ccs [2025-03-17 14:04:01,408] multiqc [DEBUG ] No samples found: ngsderive [2025-03-17 14:04:01,445] multiqc [DEBUG ] No samples found: purple [2025-03-17 14:04:01,454] multiqc [DEBUG ] No samples found: conpair [2025-03-17 14:04:01,476] multiqc [DEBUG ] No samples found: lima [2025-03-17 14:04:01,507] multiqc [DEBUG ] No samples found: peddy [2025-03-17 14:04:01,536] multiqc [DEBUG ] No samples found: somalier [2025-03-17 14:04:01,568] multiqc [DEBUG ] No samples found: methylQA [2025-03-17 14:04:01,636] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-03-17 14:04:01,636] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-03-17 14:04:01,636] multiqc [DEBUG ] No samples found: mosdepth [2025-03-17 14:04:01,645] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-03-17 14:04:01,677] multiqc [DEBUG ] No samples found: qualimap [2025-03-17 14:04:01,693] multiqc [DEBUG ] No samples found: preseq [2025-03-17 14:04:01,709] multiqc [DEBUG ] No samples found: quast [2025-03-17 14:04:01,728] multiqc [DEBUG ] No samples found: qorts [2025-03-17 14:04:01,747] multiqc [DEBUG ] No samples found: rna_seqc [2025-03-17 14:04:01,773] multiqc [DEBUG ] No samples found: rockhopper [2025-03-17 14:04:01,810] multiqc [DEBUG ] No samples found: rsem [2025-03-17 14:04:01,907] multiqc.modules.rseqc.rseqc [INFO ] Found 34 infer_experiment reports [2025-03-17 14:04:01,943] multiqc [DEBUG ] No samples found: busco [2025-03-17 14:04:01,957] multiqc [DEBUG ] No samples found: bustools [2025-03-17 14:04:01,982] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-03-17 14:04:02,011] multiqc [DEBUG ] No samples found: gffcompare [2025-03-17 14:04:02,021] multiqc [DEBUG ] No samples found: disambiguate [2025-03-17 14:04:02,049] multiqc [DEBUG ] No samples found: supernova [2025-03-17 14:04:02,176] multiqc [DEBUG ] No samples found: deeptools [2025-03-17 14:04:02,201] multiqc [DEBUG ] No samples found: sargasso [2025-03-17 14:04:02,224] multiqc [DEBUG ] No samples found: verifybamid [2025-03-17 14:04:02,262] multiqc [DEBUG ] No samples found: mirtrace [2025-03-17 14:04:02,272] multiqc [DEBUG ] No samples found: happy [2025-03-17 14:04:02,298] multiqc [DEBUG ] No samples found: mirtop [2025-03-17 14:04:02,320] multiqc [DEBUG ] No samples found: sambamba [2025-03-17 14:04:02,335] multiqc [DEBUG ] No samples found: homer [2025-03-17 14:04:02,366] multiqc [DEBUG ] No samples found: hops [2025-03-17 14:04:02,391] multiqc [DEBUG ] No samples found: macs2 [2025-03-17 14:04:02,400] multiqc [DEBUG ] No samples found: theta2 [2025-03-17 14:04:02,430] multiqc [DEBUG ] No samples found: snpeff [2025-03-17 14:04:02,490] multiqc [DEBUG ] No samples found: gatk [2025-03-17 14:04:02,500] multiqc [DEBUG ] No samples found: htseq [2025-03-17 14:04:02,514] multiqc [DEBUG ] No samples found: bcftools [2025-03-17 14:04:02,548] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M33_sorted [2025-03-17 14:04:02,552] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M31_sorted [2025-03-17 14:04:02,554] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M18_sorted [2025-03-17 14:04:02,557] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M06_sorted [2025-03-17 14:04:02,560] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M04_sorted [2025-03-17 14:04:02,563] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M27_sorted [2025-03-17 14:04:02,566] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M25_sorted [2025-03-17 14:04:02,569] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M13_sorted [2025-03-17 14:04:02,573] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M01_sorted [2025-03-17 14:04:02,576] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M34_sorted [2025-03-17 14:04:02,579] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M22_sorted [2025-03-17 14:04:02,582] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M20_sorted [2025-03-17 14:04:02,585] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M19_sorted [2025-03-17 14:04:02,587] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M09_sorted [2025-03-17 14:04:02,591] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M07_sorted [2025-03-17 14:04:02,594] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M28_sorted [2025-03-17 14:04:02,596] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M16_sorted [2025-03-17 14:04:02,599] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M14_sorted [2025-03-17 14:04:02,602] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M02_sorted [2025-03-17 14:04:02,604] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M23_sorted [2025-03-17 14:04:02,607] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M21_sorted [2025-03-17 14:04:02,610] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M11_sorted [2025-03-17 14:04:02,612] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M32_sorted [2025-03-17 14:04:02,615] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M30_sorted [2025-03-17 14:04:02,616] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M08_sorted [2025-03-17 14:04:02,618] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M29_sorted [2025-03-17 14:04:02,620] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M17_sorted [2025-03-17 14:04:02,621] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M15_sorted [2025-03-17 14:04:02,622] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M05_sorted [2025-03-17 14:04:02,623] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M03_sorted [2025-03-17 14:04:02,625] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M26_sorted [2025-03-17 14:04:02,626] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M24_sorted [2025-03-17 14:04:02,628] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M12_sorted [2025-03-17 14:04:02,629] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G192_M10_sorted [2025-03-17 14:04:02,629] multiqc.modules.featureCounts.feature_counts [INFO ] Found 34 reports [2025-03-17 14:04:02,704] multiqc [DEBUG ] No samples found: fgbio [2025-03-17 14:04:02,827] multiqc [DEBUG ] No samples found: dragen [2025-03-17 14:04:02,853] multiqc [DEBUG ] No samples found: dedup [2025-03-17 14:04:02,879] multiqc [DEBUG ] No samples found: damageprofiler [2025-03-17 14:04:03,128] multiqc [DEBUG ] No samples found: biobambam2 [2025-03-17 14:04:03,149] multiqc [DEBUG ] No samples found: jcvi [2025-03-17 14:04:03,157] multiqc [DEBUG ] No samples found: mtnucratio [2025-03-17 14:04:03,160] multiqc [DEBUG ] No samples found: picard [2025-03-17 14:04:03,198] multiqc [DEBUG ] No samples found: vep [2025-03-17 14:04:03,229] multiqc [DEBUG ] No samples found: sentieon [2025-03-17 14:04:03,252] multiqc [DEBUG ] No samples found: prokka [2025-03-17 14:04:03,278] multiqc [DEBUG ] No samples found: qc3C [2025-03-17 14:04:03,320] multiqc [DEBUG ] No samples found: nanostat [2025-03-17 14:04:03,329] multiqc [DEBUG ] No samples found: samblaster [2025-03-17 14:04:03,419] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,420] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,429] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,430] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,431] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,436] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,437] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,438] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,440] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,445] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,446] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,447] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,450] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,452] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,453] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,455] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,456] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,458] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,458] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,459] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,463] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,464] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,464] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,464] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-03-17 14:04:03,467] multiqc.modules.samtools.samtools [INFO ] Found 28 flagstat reports [2025-03-17 14:04:03,496] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-03-17 14:04:03,505] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-03-17 14:04:03,514] multiqc [DEBUG ] No samples found: bamtools [2025-03-17 14:04:03,521] multiqc [DEBUG ] No samples found: jellyfish [2025-03-17 14:04:03,531] multiqc [DEBUG ] No samples found: vcftools [2025-03-17 14:04:03,540] multiqc [DEBUG ] No samples found: longranger [2025-03-17 14:04:03,571] multiqc [DEBUG ] No samples found: stacks [2025-03-17 14:04:03,586] multiqc [DEBUG ] No samples found: varscan2 [2025-03-17 14:04:03,598] multiqc [DEBUG ] No samples found: snippy [2025-03-17 14:04:03,662] multiqc [DEBUG ] No samples found: bbmap [2025-03-17 14:04:03,688] multiqc [DEBUG ] No samples found: bismark [2025-03-17 14:04:03,712] multiqc [DEBUG ] No samples found: biscuit [2025-03-17 14:04:03,746] multiqc [DEBUG ] No samples found: hicexplorer [2025-03-17 14:04:03,768] multiqc [DEBUG ] No samples found: hicup [2025-03-17 14:04:03,808] multiqc [DEBUG ] No samples found: hicpro [2025-03-17 14:04:03,817] multiqc [DEBUG ] No samples found: salmon [2025-03-17 14:04:03,828] multiqc [DEBUG ] No samples found: kallisto [2025-03-17 14:04:03,861] multiqc [DEBUG ] No samples found: slamdunk [2025-03-17 14:04:04,900] multiqc.modules.star.star [INFO ] Found 9 reports and 9 gene count files [2025-03-17 14:04:04,934] multiqc [DEBUG ] No samples found: hisat2 [2025-03-17 14:04:04,967] multiqc [DEBUG ] No samples found: tophat [2025-03-17 14:04:05,004] multiqc [DEBUG ] No samples found: bowtie2 [2025-03-17 14:04:05,037] multiqc [DEBUG ] No samples found: bowtie1 [2025-03-17 14:04:05,063] multiqc [DEBUG ] No samples found: snpsplit [2025-03-17 14:04:05,090] multiqc [DEBUG ] No samples found: odgi [2025-03-17 14:04:05,100] multiqc [DEBUG ] No samples found: pangolin [2025-03-17 14:04:05,108] multiqc [DEBUG ] No samples found: kat [2025-03-17 14:04:05,116] multiqc [DEBUG ] No samples found: leehom [2025-03-17 14:04:05,144] multiqc [DEBUG ] No samples found: adapterRemoval [2025-03-17 14:04:05,153] multiqc [DEBUG ] No samples found: clipandmerge [2025-03-17 14:04:05,173] multiqc [DEBUG ] No samples found: cutadapt [2025-03-17 14:04:05,182] multiqc [DEBUG ] No samples found: flexbar [2025-03-17 14:04:05,190] multiqc [DEBUG ] No samples found: kaiju [2025-03-17 14:04:05,220] multiqc [DEBUG ] No samples found: kraken [2025-03-17 14:04:05,231] multiqc [DEBUG ] No samples found: malt [2025-03-17 14:04:05,265] multiqc [DEBUG ] No samples found: trimmomatic [2025-03-17 14:04:05,294] multiqc [DEBUG ] No samples found: sickle [2025-03-17 14:04:05,314] multiqc [DEBUG ] No samples found: skewer [2025-03-17 14:04:05,324] multiqc [DEBUG ] No samples found: sortmerna [2025-03-17 14:04:05,332] multiqc [DEBUG ] No samples found: biobloomtools [2025-03-17 14:04:05,367] multiqc [DEBUG ] No samples found: fastq_screen [2025-03-17 14:04:05,397] multiqc [DEBUG ] No samples found: afterqc [2025-03-17 14:04:05,427] multiqc [DEBUG ] No samples found: fastp [2025-03-17 14:04:05,448] multiqc [DEBUG ] No samples found: fastqc [2025-03-17 14:04:05,457] multiqc [DEBUG ] No samples found: pychopper [2025-03-17 14:04:05,472] multiqc [DEBUG ] No samples found: pycoqc [2025-03-17 14:04:05,485] multiqc [DEBUG ] No samples found: minionqc [2025-03-17 14:04:05,518] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-03-17 14:04:05,555] multiqc [DEBUG ] No samples found: clusterflow [2025-03-17 14:04:05,591] multiqc [DEBUG ] No samples found: bcl2fastq [2025-03-17 14:04:05,622] multiqc [DEBUG ] No samples found: bclconvert [2025-03-17 14:04:05,642] multiqc [DEBUG ] No samples found: interop [2025-03-17 14:04:05,670] multiqc [DEBUG ] No samples found: ivar [2025-03-17 14:04:05,702] multiqc [DEBUG ] No samples found: flash [2025-03-17 14:04:05,715] multiqc [DEBUG ] No samples found: seqyclean [2025-03-17 14:04:05,722] multiqc [DEBUG ] No samples found: optitype [2025-03-17 14:04:05,752] multiqc [INFO ] Compressing plot data [2025-03-17 14:04:05,781] multiqc [INFO ] Report : multiqc_report.html [2025-03-17 14:04:05,781] multiqc [INFO ] Data : multiqc_data [2025-03-17 14:04:05,781] multiqc [DEBUG ] Moving data file from '/scratch/tmpzq0x8ywf/multiqc_data' to '/projectnb/wax-dk/max/G192_RNASEQ/Scripts/99_final_summary/G192_RNASEQ_multiqc_report/multiqc_data' [2025-03-17 14:04:06,438] multiqc [INFO ] MultiQC complete