Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G192_M01_statistics_for_all_accepted_reads 40324358 0 4118558 0 0 0 0 0 40324358 0 100.0 nan 36205800 0 18102900 0 18102900 0 36205800 0 100.0 nan 36205800 0 0 0 0.0 nan 0 0 0 0 40324358 G192_M01_statistics_for_primary_reads 36205800 0 0 0 0 0 0 0 36205800 0 100.0 nan 36205800 0 18102900 0 18102900 0 36205800 0 100.0 nan 36205800 0 0 0 0.0 nan 0 0 0 0 36205800 G192_M01_statistics_for_primary_unique_reads 33497746 0 0 0 0 0 0 0 33497746 0 100.0 nan 33497746 0 16748873 0 16748873 0 33497746 0 100.0 nan 33497746 0 0 0 0.0 nan 0 0 0 0 33497746 G192_M02_statistics_for_all_accepted_reads 43521602 0 4153764 0 0 0 0 0 43521602 0 100.0 nan 39367838 0 19683919 0 19683919 0 39367838 0 100.0 nan 39367838 0 0 0 0.0 nan 0 0 0 0 43521602 G192_M02_statistics_for_primary_reads 39367838 0 0 0 0 0 0 0 39367838 0 100.0 nan 39367838 0 19683919 0 19683919 0 39367838 0 100.0 nan 39367838 0 0 0 0.0 nan 0 0 0 0 39367838 G192_M02_statistics_for_primary_unique_reads 36588778 0 0 0 0 0 0 0 36588778 0 100.0 nan 36588778 0 18294389 0 18294389 0 36588778 0 100.0 nan 36588778 0 0 0 0.0 nan 0 0 0 0 36588778 G192_M03_statistics_for_all_accepted_reads 52406508 0 5404634 0 0 0 0 0 52406508 0 100.0 nan 47001874 0 23500937 0 23500937 0 47001874 0 100.0 nan 47001874 0 0 0 0.0 nan 0 0 0 0 52406508 G192_M03_statistics_for_primary_reads 47001874 0 0 0 0 0 0 0 47001874 0 100.0 nan 47001874 0 23500937 0 23500937 0 47001874 0 100.0 nan 47001874 0 0 0 0.0 nan 0 0 0 0 47001874 G192_M03_statistics_for_primary_unique_reads 43642006 0 0 0 0 0 0 0 43642006 0 100.0 nan 43642006 0 21821003 0 21821003 0 43642006 0 100.0 nan 43642006 0 0 0 0.0 nan 0 0 0 0 43642006 G192_M04_statistics_for_all_accepted_reads 52155336 0 4790976 0 0 0 0 0 52155336 0 100.0 nan 47364360 0 23682180 0 23682180 0 47364360 0 100.0 nan 47364360 0 0 0 0.0 nan 0 0 0 0 52155336 G192_M04_statistics_for_primary_reads 47364360 0 0 0 0 0 0 0 47364360 0 100.0 nan 47364360 0 23682180 0 23682180 0 47364360 0 100.0 nan 47364360 0 0 0 0.0 nan 0 0 0 0 47364360 G192_M04_statistics_for_primary_unique_reads 44200082 0 0 0 0 0 0 0 44200082 0 100.0 nan 44200082 0 22100041 0 22100041 0 44200082 0 100.0 nan 44200082 0 0 0 0.0 nan 0 0 0 0 44200082 G192_M05_statistics_for_all_accepted_reads 48691722 0 4844584 0 0 0 0 0 48691722 0 100.0 nan 43847138 0 21923569 0 21923569 0 43847138 0 100.0 nan 43847138 0 0 0 0.0 nan 0 0 0 0 48691722 G192_M05_statistics_for_primary_reads 43847138 0 0 0 0 0 0 0 43847138 0 100.0 nan 43847138 0 21923569 0 21923569 0 43847138 0 100.0 nan 43847138 0 0 0 0.0 nan 0 0 0 0 43847138 G192_M05_statistics_for_primary_unique_reads 40547572 0 0 0 0 0 0 0 40547572 0 100.0 nan 40547572 0 20273786 0 20273786 0 40547572 0 100.0 nan 40547572 0 0 0 0.0 nan 0 0 0 0 40547572 G192_M06_statistics_for_all_accepted_reads 46247250 0 3774472 0 0 0 0 0 46247250 0 100.0 nan 42472778 0 21236389 0 21236389 0 42472778 0 100.0 nan 42472778 0 0 0 0.0 nan 0 0 0 0 46247250 G192_M06_statistics_for_primary_reads 42472778 0 0 0 0 0 0 0 42472778 0 100.0 nan 42472778 0 21236389 0 21236389 0 42472778 0 100.0 nan 42472778 0 0 0 0.0 nan 0 0 0 0 42472778 G192_M06_statistics_for_primary_unique_reads 39953902 0 0 0 0 0 0 0 39953902 0 100.0 nan 39953902 0 19976951 0 19976951 0 39953902 0 100.0 nan 39953902 0 0 0 0.0 nan 0 0 0 0 39953902 G192_M07_statistics_for_all_accepted_reads 56745364 0 5141848 0 0 0 0 0 56745364 0 100.0 nan 51603516 0 25801758 0 25801758 0 51603516 0 100.0 nan 51603516 0 0 0 0.0 nan 0 0 0 0 56745364 G192_M07_statistics_for_primary_reads 51603516 0 0 0 0 0 0 0 51603516 0 100.0 nan 51603516 0 25801758 0 25801758 0 51603516 0 100.0 nan 51603516 0 0 0 0.0 nan 0 0 0 0 51603516 G192_M07_statistics_for_primary_unique_reads 48243028 0 0 0 0 0 0 0 48243028 0 100.0 nan 48243028 0 24121514 0 24121514 0 48243028 0 100.0 nan 48243028 0 0 0 0.0 nan 0 0 0 0 48243028 G192_M08_statistics_for_all_accepted_reads 52215200 0 5270826 0 0 0 0 0 52215200 0 100.0 nan 46944374 0 23472187 0 23472187 0 46944374 0 100.0 nan 46944374 0 0 0 0.0 nan 0 0 0 0 52215200 G192_M08_statistics_for_primary_reads 46944374 0 0 0 0 0 0 0 46944374 0 100.0 nan 46944374 0 23472187 0 23472187 0 46944374 0 100.0 nan 46944374 0 0 0 0.0 nan 0 0 0 0 46944374 G192_M08_statistics_for_primary_unique_reads 43122094 0 0 0 0 0 0 0 43122094 0 100.0 nan 43122094 0 21561047 0 21561047 0 43122094 0 100.0 nan 43122094 0 0 0 0.0 nan 0 0 0 0 43122094 G192_M09_statistics_for_all_accepted_reads 47974454 0 2816454 0 0 0 0 0 47974454 0 100.0 nan 45158000 0 22579000 0 22579000 0 45158000 0 100.0 nan 45158000 0 0 0 0.0 nan 0 0 0 0 47974454 G192_M09_statistics_for_primary_reads 45158000 0 0 0 0 0 0 0 45158000 0 100.0 nan 45158000 0 22579000 0 22579000 0 45158000 0 100.0 nan 45158000 0 0 0 0.0 nan 0 0 0 0 45158000 G192_M09_statistics_for_primary_unique_reads 43150986 0 0 0 0 0 0 0 43150986 0 100.0 nan 43150986 0 21575493 0 21575493 0 43150986 0 100.0 nan 43150986 0 0 0 0.0 nan 0 0 0 0 43150986 statistics_for_primary_unique_reads 50963720 0 0 0 0 0 0 0 50963720 0 100.0 nan 50963720 0 25481860 0 25481860 0 50963720 0 100.0 nan 50963720 0 0 0 0.0 nan 0 0 0 0 50963720