[2024-12-11 13:47:34,600] multiqc [DEBUG ] This is MultiQC v1.11 [2024-12-11 13:47:34,600] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-12-11 13:47:34,600] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-12-11 13:47:34,600] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-12-11 13:47:34,601] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G216_G221/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-12-11 13:47:34,601] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-12-11 13:47:34,601] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2024-12-11 13:47:34,601] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G216_G221/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G216_G221/SAMPLES /projectnb2/wax-dk/max/G216_G221/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G216_G221/Scripts/06_CollectMetrics/ [2024-12-11 13:47:35,072] multiqc [WARNING] MultiQC Version v1.25.2 now available! [2024-12-11 13:47:35,072] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G216_G221/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G216_G221/SAMPLES /projectnb2/wax-dk/max/G216_G221/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G216_G221/Scripts/06_CollectMetrics/ [2024-12-11 13:47:35,073] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G216_G221/Scripts/99_final_summary/G216_G221_multiqc_report [2024-12-11 13:47:35,073] multiqc [DEBUG ] Template : default [2024-12-11 13:47:35,073] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-12-11 13:47:35,073] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-12-11 13:47:35,074] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmppfg92eda [2024-12-11 13:47:35,156] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G216_G221/SAMPLES [2024-12-11 13:47:35,156] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G216_G221/Scripts/03_FASTQC [2024-12-11 13:47:35,156] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G216_G221/Scripts/06_CollectMetrics [2024-12-11 13:47:35,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:35,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:35,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,340] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,340] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,343] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:35,359] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,202] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,206] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:36,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-12-11 13:47:37,091] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M07_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:37,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M07_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:37,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,137] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:37,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,007] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,023] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2024-12-11 13:47:38,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M20_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:38,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M20_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:38,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:38,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,723] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,723] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,727] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:39,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M20_featureCounts.out [2024-12-11 13:47:40,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M18_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:40,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M18_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:40,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,633] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,636] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,636] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,636] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,636] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:40,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,502] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:41,517] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M18_featureCounts.out [2024-12-11 13:47:42,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:47:42,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:47:42,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,385] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,386] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:42,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,269] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:43,284] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-12-11 13:47:44,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M31_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:44,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M31_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:44,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,209] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:44,226] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,064] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,079] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M31_featureCounts.out [2024-12-11 13:47:45,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M29_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:45,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M29_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:45,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,938] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:45,957] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,801] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,801] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,801] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:46,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M29_featureCounts.out [2024-12-11 13:47:47,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M42_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:47,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M42_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:47,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,703] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,703] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:47,722] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:48,573] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2024-12-11 13:47:49,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M53_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:49,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M53_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:49,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,458] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,459] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:49,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,324] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:50,340] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M53_featureCounts.out [2024-12-11 13:47:51,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:51,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:51,196] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,201] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:51,216] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,040] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,040] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,040] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,056] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-12-11 13:47:52,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M03_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:52,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M03_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:52,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:52,985] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,809] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:53,826] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2024-12-11 13:47:54,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M14_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:54,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M14_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:54,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,703] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,703] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,707] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:54,724] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,549] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,552] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:55,568] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M14_featureCounts.out [2024-12-11 13:47:56,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M25_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:56,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M25_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:56,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,441] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,444] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:56,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,292] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,295] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:57,313] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M25_featureCounts.out [2024-12-11 13:47:58,153] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M36_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:47:58,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M36_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:47:58,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,220] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:58,236] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,073] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,076] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,097] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M36_featureCounts.out [2024-12-11 13:47:59,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:47:59,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:47:59,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,986] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:47:59,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,007] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,844] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:00,860] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-12-11 13:48:01,765] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M47_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:01,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M47_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:01,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,799] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:01,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,643] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,646] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:02,661] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2024-12-11 13:48:03,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:48:03,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:48:03,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,567] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:03,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,396] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,401] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:04,417] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-12-11 13:48:05,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M58_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:05,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M58_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:05,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,336] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:05,351] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,187] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:06,203] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M58_featureCounts.out [2024-12-11 13:48:07,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:07,038] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:07,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,082] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,082] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,103] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,924] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:07,939] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-12-11 13:48:08,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M10_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:08,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M10_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:08,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:08,840] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,683] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,687] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,687] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,687] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,688] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,688] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:09,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2024-12-11 13:48:10,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:10,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:10,586] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,588] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,591] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:10,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,446] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:11,462] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-12-11 13:48:12,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M08_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:12,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M08_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:12,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,356] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:12,376] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,223] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:13,239] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2024-12-11 13:48:14,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M21_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:14,102] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M21_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:14,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,164] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:14,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,037] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M21_featureCounts.out [2024-12-11 13:48:15,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M19_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:15,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M19_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:15,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,931] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,934] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,934] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,935] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,935] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,935] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,935] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,935] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:15,950] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,799] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:16,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M19_featureCounts.out [2024-12-11 13:48:17,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M32_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:17,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M32_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:17,719] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,722] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,722] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,726] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,726] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,727] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,727] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,727] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,727] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,727] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:17,745] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,585] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,586] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:18,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M32_featureCounts.out [2024-12-11 13:48:19,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M43_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:19,438] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M43_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:19,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:19,501] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,329] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,329] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,332] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:20,347] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2024-12-11 13:48:21,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M54_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:21,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M54_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:21,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,245] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:21,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,095] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,098] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,098] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,100] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,101] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,116] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M54_featureCounts.out [2024-12-11 13:48:22,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:22,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:23,017] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,019] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,023] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,040] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,901] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:23,918] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-12-11 13:48:24,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M04_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:24,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M04_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:24,826] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,831] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:24,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,698] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:25,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2024-12-11 13:48:26,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:48:26,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:48:26,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,635] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:26,654] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,489] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:27,509] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-12-11 13:48:28,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M15_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:28,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M15_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:28,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,406] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,410] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:28,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,261] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,261] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:29,284] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M15_featureCounts.out [2024-12-11 13:48:30,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M26_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:30,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M26_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:30,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,180] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:30,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,017] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,023] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,024] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,039] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M26_featureCounts.out [2024-12-11 13:48:31,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M37_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:31,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M37_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:31,904] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:31,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:32,779] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2024-12-11 13:48:33,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M50_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:33,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M50_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:33,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:33,694] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,522] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:34,548] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M50_featureCounts.out [2024-12-11 13:48:35,414] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M48_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:35,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M48_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:35,453] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:35,475] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,317] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:36,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2024-12-11 13:48:37,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:37,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:37,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:37,247] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,104] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,104] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,105] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,105] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,105] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,105] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,105] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,121] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-12-11 13:48:38,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M59_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:38,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M59_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:39,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,048] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,912] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,912] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,914] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,915] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:39,931] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M59_featureCounts.out [2024-12-11 13:48:40,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M11_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:40,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M11_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:40,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,840] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,845] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:40,865] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,709] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:41,730] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2024-12-11 13:48:42,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M09_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:42,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M09_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:42,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,665] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:42,681] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,549] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,549] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,550] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,550] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,550] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,550] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:43,576] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2024-12-11 13:48:44,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M22_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:44,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M22_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:44,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,465] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,469] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,469] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,470] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:44,485] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,308] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,317] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:45,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M22_featureCounts.out [2024-12-11 13:48:46,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M33_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:46,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M33_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:46,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,294] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:46,311] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,129] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,133] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,149] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M33_featureCounts.out [2024-12-11 13:48:47,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M44_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:47,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M44_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:48,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,028] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,033] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,033] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,034] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,034] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,034] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,034] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,034] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,054] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,871] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,871] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:48,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2024-12-11 13:48:49,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M05_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:49,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M05_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:49,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,790] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,794] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:49,810] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,631] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,631] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,631] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:50,648] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2024-12-11 13:48:51,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M16_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:51,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M16_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:51,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:51,596] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,417] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:52,441] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M16_featureCounts.out [2024-12-11 13:48:53,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M27_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:53,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M27_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:53,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,324] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:53,350] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,177] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,182] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:54,200] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M27_featureCounts.out [2024-12-11 13:48:55,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M38_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:55,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M38_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:55,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,109] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,126] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,957] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,957] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,962] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:55,978] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2024-12-11 13:48:56,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M01_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:48:56,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M01_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:48:56,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,896] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:56,911] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,745] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:57,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2024-12-11 13:48:58,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:48:58,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:48:58,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,665] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,669] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:58,685] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,514] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:48:59,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-12-11 13:49:00,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M12_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:00,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M12_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:00,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:00,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,289] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,292] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:01,308] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2024-12-11 13:49:02,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M23_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:02,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M23_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:02,194] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,203] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,204] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:02,226] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,053] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,060] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,079] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M23_featureCounts.out [2024-12-11 13:49:03,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M06_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:03,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M06_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:03,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,956] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:03,973] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,808] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:04,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2024-12-11 13:49:05,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:05,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:05,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,726] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,730] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:05,746] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,574] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,580] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:06,596] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-12-11 13:49:07,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:07,430] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:07,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:07,507] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,337] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,337] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,342] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,343] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,343] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,343] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,343] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,343] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:08,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-12-11 13:49:09,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:09,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:09,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,250] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:09,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,095] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,114] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-12-11 13:49:10,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:10,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:10,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:10,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,003] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,821] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:11,837] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-12-11 13:49:12,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M55_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:12,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M55_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:12,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:12,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:13,621] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M55_featureCounts.out [2024-12-11 13:49:14,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:14,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:14,478] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,484] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:14,502] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,317] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,317] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,317] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:15,335] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-12-11 13:49:16,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:16,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:16,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,245] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,245] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,245] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,246] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,246] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,246] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:16,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,082] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-12-11 13:49:17,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M40_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:17,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M40_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:17,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:17,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,840] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,840] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,840] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:18,856] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2024-12-11 13:49:19,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M51_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:19,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M51_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:19,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,728] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:19,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,561] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,566] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:20,582] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M51_featureCounts.out [2024-12-11 13:49:21,440] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M49_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:21,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M49_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:21,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,496] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,496] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,500] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,500] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,500] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,500] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,501] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,501] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,501] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:21,517] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,330] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:22,348] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M49_featureCounts.out [2024-12-11 13:49:23,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:23,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:23,230] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,232] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,237] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:23,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,085] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,085] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-12-11 13:49:24,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:24,975] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:25,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,008] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,008] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,013] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,013] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,038] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:25,889] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-12-11 13:49:26,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:26,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:26,802] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:26,825] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:27,690] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-12-11 13:49:28,537] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M34_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:28,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M34_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:28,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,604] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:28,624] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,457] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:29,474] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M34_featureCounts.out [2024-12-11 13:49:30,333] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-12-11 13:49:30,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-12-11 13:49:30,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,371] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,371] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,371] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,371] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,371] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:30,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,243] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,247] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:31,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-12-11 13:49:32,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M45_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:32,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M45_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:32,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,199] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,199] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,201] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,202] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:32,218] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,123] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2024-12-11 13:49:33,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M56_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:33,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M56_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:34,040] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,042] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,045] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,045] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,046] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,046] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,046] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,046] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,046] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,061] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,914] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:34,930] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M56_featureCounts.out [2024-12-11 13:49:35,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:35,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:35,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,833] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:35,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:36,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-12-11 13:49:37,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M17_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:37,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M17_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:37,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,641] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:37,668] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,510] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:38,526] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M17_featureCounts.out [2024-12-11 13:49:39,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M30_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:39,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M30_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:39,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,442] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,442] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,446] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:39,462] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:40,334] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M30_featureCounts.out [2024-12-11 13:49:41,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M28_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:41,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M28_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:41,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:41,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,122] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,125] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:42,140] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M28_featureCounts.out [2024-12-11 13:49:43,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M41_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:43,025] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M41_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:43,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,073] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,074] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,074] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,074] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,074] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,074] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,093] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:43,986] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2024-12-11 13:49:44,850] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M39_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:44,853] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M39_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:44,907] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,908] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,909] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,912] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:44,927] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,772] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:45,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2024-12-11 13:49:46,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M52_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:46,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M52_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:46,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,698] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,698] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,698] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,699] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,699] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,699] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:46,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,575] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,575] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,575] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,575] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,575] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,576] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,576] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:47,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M52_featureCounts.out [2024-12-11 13:49:48,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:48,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:48,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,493] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,493] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:48,512] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,356] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:49,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-12-11 13:49:50,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M02_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:50,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M02_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:50,285] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:50,304] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,145] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,145] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:51,163] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2024-12-11 13:49:52,038] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M13_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:52,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M13_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:52,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:52,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:53,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M13_featureCounts.out [2024-12-11 13:49:53,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M24_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:53,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M24_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:53,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,951] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,954] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,954] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,954] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,955] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,955] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:53,970] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,817] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,820] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,821] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:54,837] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M24_featureCounts.out [2024-12-11 13:49:55,710] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M46_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:55,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M46_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:55,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,770] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,774] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:55,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,649] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,654] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,655] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,655] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:56,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2024-12-11 13:49:57,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M57_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:57,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M57_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:57,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,561] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:57,584] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,427] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:58,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M57_featureCounts.out [2024-12-11 13:49:59,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M70_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-12-11 13:49:59,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M70_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-12-11 13:49:59,322] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:49:59,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,185] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,187] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,191] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:00,209] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2024-12-11 13:50:01,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,080] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-11 13:50:01,114] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-11 13:50:01,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-11 13:50:01,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-11 13:50:01,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-11 13:50:01,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-12-11 13:50:01,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-12-11 13:50:01,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-12-11 13:50:01,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-12-11 13:50:01,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-12-11 13:50:01,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,199] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,199] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-12-11 13:50:01,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-12-11 13:50:01,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-12-11 13:50:01,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-12-11 13:50:01,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-11 13:50:01,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-11 13:50:01,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-12-11 13:50:01,258] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-11 13:50:01,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-12-11 13:50:01,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:01,278] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-12-11 13:50:02,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-11 13:50:02,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-11 13:50:02,025] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-11 13:50:02,025] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-11 13:50:02,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-12-11 13:50:02,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-11 13:50:02,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-11 13:50:02,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-11 13:50:02,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-11 13:50:02,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-12-11 13:50:02,557] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-12-11 13:50:02,558] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-12-11 13:50:02,561] multiqc [DEBUG ] No samples found: custom_content [2024-12-11 13:50:02,566] multiqc [DEBUG ] No samples found: ccs [2024-12-11 13:50:02,572] multiqc [DEBUG ] No samples found: ngsderive [2024-12-11 13:50:02,579] multiqc [DEBUG ] No samples found: purple [2024-12-11 13:50:02,585] multiqc [DEBUG ] No samples found: conpair [2024-12-11 13:50:02,590] multiqc [DEBUG ] No samples found: lima [2024-12-11 13:50:02,595] multiqc [DEBUG ] No samples found: peddy [2024-12-11 13:50:02,600] multiqc [DEBUG ] No samples found: somalier [2024-12-11 13:50:02,605] multiqc [DEBUG ] No samples found: methylQA [2024-12-11 13:50:02,614] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-12-11 13:50:02,614] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-12-11 13:50:02,614] multiqc [DEBUG ] No samples found: mosdepth [2024-12-11 13:50:02,619] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-12-11 13:50:02,625] multiqc [DEBUG ] No samples found: qualimap [2024-12-11 13:50:02,631] multiqc [DEBUG ] No samples found: preseq [2024-12-11 13:50:02,637] multiqc [DEBUG ] No samples found: quast [2024-12-11 13:50:02,641] multiqc [DEBUG ] No samples found: qorts [2024-12-11 13:50:02,646] multiqc [DEBUG ] No samples found: rna_seqc [2024-12-11 13:50:02,651] multiqc [DEBUG ] No samples found: rockhopper [2024-12-11 13:50:02,656] multiqc [DEBUG ] No samples found: rsem [2024-12-11 13:50:02,753] multiqc.modules.rseqc.rseqc [INFO ] Found 82 infer_experiment reports [2024-12-11 13:50:02,762] multiqc [DEBUG ] No samples found: busco [2024-12-11 13:50:02,767] multiqc [DEBUG ] No samples found: bustools [2024-12-11 13:50:02,772] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-12-11 13:50:02,776] multiqc [DEBUG ] No samples found: gffcompare [2024-12-11 13:50:02,781] multiqc [DEBUG ] No samples found: disambiguate [2024-12-11 13:50:02,786] multiqc [DEBUG ] No samples found: supernova [2024-12-11 13:50:02,801] multiqc [DEBUG ] No samples found: deeptools [2024-12-11 13:50:02,809] multiqc [DEBUG ] No samples found: sargasso [2024-12-11 13:50:02,815] multiqc [DEBUG ] No samples found: verifybamid [2024-12-11 13:50:02,822] multiqc [DEBUG ] No samples found: mirtrace [2024-12-11 13:50:02,826] multiqc [DEBUG ] No samples found: happy [2024-12-11 13:50:02,830] multiqc [DEBUG ] No samples found: mirtop [2024-12-11 13:50:02,837] multiqc [DEBUG ] No samples found: sambamba [2024-12-11 13:50:02,844] multiqc [DEBUG ] No samples found: homer [2024-12-11 13:50:02,850] multiqc [DEBUG ] No samples found: hops [2024-12-11 13:50:02,857] multiqc [DEBUG ] No samples found: macs2 [2024-12-11 13:50:02,863] multiqc [DEBUG ] No samples found: theta2 [2024-12-11 13:50:02,870] multiqc [DEBUG ] No samples found: snpeff [2024-12-11 13:50:02,877] multiqc [DEBUG ] No samples found: gatk [2024-12-11 13:50:02,881] multiqc [DEBUG ] No samples found: htseq [2024-12-11 13:50:02,889] multiqc [DEBUG ] No samples found: bcftools [2024-12-11 13:50:02,897] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M68_sorted [2024-12-11 13:50:02,899] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M07_sorted [2024-12-11 13:50:02,902] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M20_sorted [2024-12-11 13:50:02,905] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M18_sorted [2024-12-11 13:50:02,907] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M78_sorted [2024-12-11 13:50:02,910] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M31_sorted [2024-12-11 13:50:02,913] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M29_sorted [2024-12-11 13:50:02,916] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M42_sorted [2024-12-11 13:50:02,919] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M53_sorted [2024-12-11 13:50:02,922] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M64_sorted [2024-12-11 13:50:02,925] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M03_sorted [2024-12-11 13:50:02,929] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M14_sorted [2024-12-11 13:50:02,932] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M25_sorted [2024-12-11 13:50:02,936] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M36_sorted [2024-12-11 13:50:02,939] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M75_sorted [2024-12-11 13:50:02,942] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M47_sorted [2024-12-11 13:50:02,945] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted [2024-12-11 13:50:02,948] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M58_sorted [2024-12-11 13:50:02,951] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M71_sorted [2024-12-11 13:50:02,954] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M10_sorted [2024-12-11 13:50:02,957] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M69_sorted [2024-12-11 13:50:02,960] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M08_sorted [2024-12-11 13:50:02,963] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M21_sorted [2024-12-11 13:50:02,966] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M19_sorted [2024-12-11 13:50:02,969] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M32_sorted [2024-12-11 13:50:02,972] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M43_sorted [2024-12-11 13:50:02,975] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M54_sorted [2024-12-11 13:50:02,978] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M65_sorted [2024-12-11 13:50:02,981] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M04_sorted [2024-12-11 13:50:02,984] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted [2024-12-11 13:50:02,986] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M15_sorted [2024-12-11 13:50:02,989] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M26_sorted [2024-12-11 13:50:02,993] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M37_sorted [2024-12-11 13:50:02,996] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M50_sorted [2024-12-11 13:50:02,999] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M48_sorted [2024-12-11 13:50:03,001] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M61_sorted [2024-12-11 13:50:03,004] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M59_sorted [2024-12-11 13:50:03,007] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M11_sorted [2024-12-11 13:50:03,009] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M09_sorted [2024-12-11 13:50:03,012] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M22_sorted [2024-12-11 13:50:03,014] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M33_sorted [2024-12-11 13:50:03,017] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M44_sorted [2024-12-11 13:50:03,020] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M05_sorted [2024-12-11 13:50:03,023] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M16_sorted [2024-12-11 13:50:03,025] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M27_sorted [2024-12-11 13:50:03,027] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M38_sorted [2024-12-11 13:50:03,030] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M01_sorted [2024-12-11 13:50:03,032] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M76_sorted [2024-12-11 13:50:03,034] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M12_sorted [2024-12-11 13:50:03,037] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M23_sorted [2024-12-11 13:50:03,038] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M06_sorted [2024-12-11 13:50:03,040] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted [2024-12-11 13:50:03,041] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M72_sorted [2024-12-11 13:50:03,043] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted [2024-12-11 13:50:03,044] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M79_sorted [2024-12-11 13:50:03,045] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M55_sorted [2024-12-11 13:50:03,047] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M77_sorted [2024-12-11 13:50:03,047] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M66_sorted [2024-12-11 13:50:03,048] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M40_sorted [2024-12-11 13:50:03,049] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M51_sorted [2024-12-11 13:50:03,050] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M49_sorted [2024-12-11 13:50:03,051] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M62_sorted [2024-12-11 13:50:03,051] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted [2024-12-11 13:50:03,052] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted [2024-12-11 13:50:03,053] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M34_sorted [2024-12-11 13:50:03,053] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M80_sorted [2024-12-11 13:50:03,054] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M45_sorted [2024-12-11 13:50:03,054] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M56_sorted [2024-12-11 13:50:03,055] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M67_sorted [2024-12-11 13:50:03,055] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M17_sorted [2024-12-11 13:50:03,056] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M30_sorted [2024-12-11 13:50:03,056] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M28_sorted [2024-12-11 13:50:03,057] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M41_sorted [2024-12-11 13:50:03,057] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M39_sorted [2024-12-11 13:50:03,058] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M52_sorted [2024-12-11 13:50:03,058] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M63_sorted [2024-12-11 13:50:03,059] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M02_sorted [2024-12-11 13:50:03,059] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M13_sorted [2024-12-11 13:50:03,059] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M24_sorted [2024-12-11 13:50:03,060] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M46_sorted [2024-12-11 13:50:03,061] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M57_sorted [2024-12-11 13:50:03,061] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M70_sorted [2024-12-11 13:50:03,061] multiqc.modules.featureCounts.feature_counts [INFO ] Found 82 reports [2024-12-11 13:50:03,075] multiqc [DEBUG ] No samples found: fgbio [2024-12-11 13:50:03,092] multiqc [DEBUG ] No samples found: dragen [2024-12-11 13:50:03,100] multiqc [DEBUG ] No samples found: dedup [2024-12-11 13:50:03,106] multiqc [DEBUG ] No samples found: damageprofiler [2024-12-11 13:50:03,139] multiqc [DEBUG ] No samples found: biobambam2 [2024-12-11 13:50:03,146] multiqc [DEBUG ] No samples found: jcvi [2024-12-11 13:50:03,152] multiqc [DEBUG ] No samples found: mtnucratio [2024-12-11 13:50:03,155] multiqc [DEBUG ] No samples found: picard [2024-12-11 13:50:03,160] multiqc [DEBUG ] No samples found: vep [2024-12-11 13:50:03,168] multiqc [DEBUG ] No samples found: sentieon [2024-12-11 13:50:03,174] multiqc [DEBUG ] No samples found: prokka [2024-12-11 13:50:03,179] multiqc [DEBUG ] No samples found: qc3C [2024-12-11 13:50:03,183] multiqc [DEBUG ] No samples found: nanostat [2024-12-11 13:50:03,188] multiqc [DEBUG ] No samples found: samblaster [2024-12-11 13:50:03,201] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,202] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,204] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,205] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,206] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,207] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,208] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,209] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,210] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,211] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,212] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,213] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,214] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,215] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,216] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,217] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,218] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,219] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,220] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,221] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,222] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,223] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,224] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,225] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,225] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,226] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,227] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,228] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,229] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,230] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,231] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,232] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,233] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,233] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,234] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,235] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,236] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,237] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,238] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,239] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,240] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,241] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,242] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,242] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,244] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,244] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,245] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,246] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,247] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,248] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,248] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,249] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,249] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,250] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,251] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,251] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,252] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,252] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,252] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,253] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,253] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,254] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,254] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,254] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,255] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,255] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,255] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,256] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,256] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,256] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,257] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,257] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,257] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,258] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,258] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,259] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,259] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,259] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,260] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,260] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,260] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-12-11 13:50:03,261] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports [2024-12-11 13:50:03,267] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-12-11 13:50:03,272] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-12-11 13:50:03,279] multiqc [DEBUG ] No samples found: bamtools [2024-12-11 13:50:03,283] multiqc [DEBUG ] No samples found: jellyfish [2024-12-11 13:50:03,291] multiqc [DEBUG ] No samples found: vcftools [2024-12-11 13:50:03,296] multiqc [DEBUG ] No samples found: longranger [2024-12-11 13:50:03,303] multiqc [DEBUG ] No samples found: stacks [2024-12-11 13:50:03,309] multiqc [DEBUG ] No samples found: varscan2 [2024-12-11 13:50:03,314] multiqc [DEBUG ] No samples found: snippy [2024-12-11 13:50:03,327] multiqc [DEBUG ] No samples found: bbmap [2024-12-11 13:50:03,332] multiqc [DEBUG ] No samples found: bismark [2024-12-11 13:50:03,337] multiqc [DEBUG ] No samples found: biscuit [2024-12-11 13:50:03,344] multiqc [DEBUG ] No samples found: hicexplorer [2024-12-11 13:50:03,350] multiqc [DEBUG ] No samples found: hicup [2024-12-11 13:50:03,355] multiqc [DEBUG ] No samples found: hicpro [2024-12-11 13:50:03,361] multiqc [DEBUG ] No samples found: salmon [2024-12-11 13:50:03,368] multiqc [DEBUG ] No samples found: kallisto [2024-12-11 13:50:03,375] multiqc [DEBUG ] No samples found: slamdunk [2024-12-11 13:50:03,380] multiqc [DEBUG ] No samples found: star [2024-12-11 13:50:03,385] multiqc [DEBUG ] No samples found: hisat2 [2024-12-11 13:50:03,391] multiqc [DEBUG ] No samples found: tophat [2024-12-11 13:50:03,398] multiqc [DEBUG ] No samples found: bowtie2 [2024-12-11 13:50:03,403] multiqc [DEBUG ] No samples found: bowtie1 [2024-12-11 13:50:03,409] multiqc [DEBUG ] No samples found: snpsplit [2024-12-11 13:50:03,414] multiqc [DEBUG ] No samples found: odgi [2024-12-11 13:50:03,419] multiqc [DEBUG ] No samples found: pangolin [2024-12-11 13:50:03,424] multiqc [DEBUG ] No samples found: kat [2024-12-11 13:50:03,429] multiqc [DEBUG ] No samples found: leehom [2024-12-11 13:50:03,434] multiqc [DEBUG ] No samples found: adapterRemoval [2024-12-11 13:50:03,439] multiqc [DEBUG ] No samples found: clipandmerge [2024-12-11 13:50:03,444] multiqc [DEBUG ] No samples found: cutadapt [2024-12-11 13:50:03,449] multiqc [DEBUG ] No samples found: flexbar [2024-12-11 13:50:03,453] multiqc [DEBUG ] No samples found: kaiju [2024-12-11 13:50:03,458] multiqc [DEBUG ] No samples found: kraken [2024-12-11 13:50:03,464] multiqc [DEBUG ] No samples found: malt [2024-12-11 13:50:03,470] multiqc [DEBUG ] No samples found: trimmomatic [2024-12-11 13:50:03,476] multiqc [DEBUG ] No samples found: sickle [2024-12-11 13:50:03,481] multiqc [DEBUG ] No samples found: skewer [2024-12-11 13:50:03,486] multiqc [DEBUG ] No samples found: sortmerna [2024-12-11 13:50:03,494] multiqc [DEBUG ] No samples found: biobloomtools [2024-12-11 13:50:03,500] multiqc [DEBUG ] No samples found: fastq_screen [2024-12-11 13:50:03,505] multiqc [DEBUG ] No samples found: afterqc [2024-12-11 13:50:03,511] multiqc [DEBUG ] No samples found: fastp [2024-12-11 13:50:03,516] multiqc [DEBUG ] No samples found: fastqc [2024-12-11 13:50:03,520] multiqc [DEBUG ] No samples found: pychopper [2024-12-11 13:50:03,525] multiqc [DEBUG ] No samples found: pycoqc [2024-12-11 13:50:03,530] multiqc [DEBUG ] No samples found: minionqc [2024-12-11 13:50:03,535] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-12-11 13:50:03,539] multiqc [DEBUG ] No samples found: clusterflow [2024-12-11 13:50:03,544] multiqc [DEBUG ] No samples found: bcl2fastq [2024-12-11 13:50:03,549] multiqc [DEBUG ] No samples found: bclconvert [2024-12-11 13:50:03,553] multiqc [DEBUG ] No samples found: interop [2024-12-11 13:50:03,558] multiqc [DEBUG ] No samples found: ivar [2024-12-11 13:50:03,563] multiqc [DEBUG ] No samples found: flash [2024-12-11 13:50:03,568] multiqc [DEBUG ] No samples found: seqyclean [2024-12-11 13:50:03,574] multiqc [DEBUG ] No samples found: optitype [2024-12-11 13:50:03,603] multiqc [INFO ] Compressing plot data [2024-12-11 13:50:03,620] multiqc [INFO ] Report : multiqc_report.html [2024-12-11 13:50:03,620] multiqc [INFO ] Data : multiqc_data [2024-12-11 13:50:03,620] multiqc [DEBUG ] Moving data file from '/scratch/tmppfg92eda/multiqc_data' to '/projectnb/wax-dk/max/G216_G221/Scripts/99_final_summary/G216_G221_multiqc_report/multiqc_data' [2024-12-11 13:50:03,724] multiqc [INFO ] MultiQC complete