[2023-12-12 15:34:03,045] multiqc [DEBUG ] This is MultiQC v1.11 [2023-12-12 15:34:03,046] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2023-12-12 15:34:03,046] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-12-12 15:34:03,047] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-12-12 15:34:03,049] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G217_SG_20231204/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2023-12-12 15:34:03,050] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-12-12 15:34:03,050] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G217_SG_20231204/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G217_SG_20231204/SAMPLES /projectnb/wax-dk/max/G217_SG_20231204/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G217_SG_20231204/Scripts/06_CollectMetrics/ [2023-12-12 15:34:03,678] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-12-12 15:34:03,678] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G217_SG_20231204/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G217_SG_20231204/SAMPLES /projectnb/wax-dk/max/G217_SG_20231204/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G217_SG_20231204/Scripts/06_CollectMetrics/ [2023-12-12 15:34:03,678] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G217_SG_20231204/Scripts/14_final_summary/G217_SG_20231204_multiqc_report [2023-12-12 15:34:03,678] multiqc [DEBUG ] Template : default [2023-12-12 15:34:03,678] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2023-12-12 15:34:03,679] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2023-12-12 15:34:03,679] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpkkc1l01y [2023-12-12 15:34:03,760] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G217_SG_20231204/SAMPLES [2023-12-12 15:34:03,760] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G217_SG_20231204/Scripts/03_FASTQC [2023-12-12 15:34:03,760] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G217_SG_20231204/Scripts/06_CollectMetrics [2023-12-12 15:34:04,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M02_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:04,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M02_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:04,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M02_primary_unique.bam.bai [2023-12-12 15:34:04,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M02_primary_unique.bam [2023-12-12 15:34:04,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M02_hist.pdf [2023-12-12 15:34:04,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:04,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:04,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:04,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:04,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:04,258] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,260] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,263] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:04,280] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,190] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:05,212] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M02_featureCounts.out [2023-12-12 15:34:06,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:06,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:06,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M02_metrics [2023-12-12 15:34:06,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M23_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:06,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M23_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:06,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M23_primary_unique.bam.bai [2023-12-12 15:34:06,268] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M23_primary_unique.bam [2023-12-12 15:34:06,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M23_hist.pdf [2023-12-12 15:34:06,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:06,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:06,315] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:06,315] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:06,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:06,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,389] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:06,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:07,346] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M23_featureCounts.out [2023-12-12 15:34:08,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:08,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:08,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M23_metrics [2023-12-12 15:34:08,300] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M18_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:08,301] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M18_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:08,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M18_primary_unique.bam [2023-12-12 15:34:08,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M18_primary_unique.bam.bai [2023-12-12 15:34:08,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:08,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:08,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:08,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:08,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:08,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M18_hist.pdf [2023-12-12 15:34:08,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,461] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,461] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,462] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,462] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,462] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,462] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,462] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:08,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,420] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:09,445] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M18_featureCounts.out [2023-12-12 15:34:10,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:10,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:10,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M18_metrics [2023-12-12 15:34:10,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M09_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:10,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M09_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:10,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M09_primary_unique.bam [2023-12-12 15:34:10,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M09_primary_unique.bam.bai [2023-12-12 15:34:10,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M09_hist.pdf [2023-12-12 15:34:10,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:10,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:10,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:10,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:10,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:10,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,657] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,662] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,662] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,663] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,663] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,663] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,663] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,663] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:10,684] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,630] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,631] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,635] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:11,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M09_featureCounts.out [2023-12-12 15:34:12,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:12,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:12,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M09_metrics [2023-12-12 15:34:12,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M07_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:12,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M07_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:12,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M07_primary_unique.bam.bai [2023-12-12 15:34:12,775] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M07_primary_unique.bam [2023-12-12 15:34:12,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M07_hist.pdf [2023-12-12 15:34:12,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:12,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:12,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:12,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:12,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:12,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,024] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,024] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,024] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,025] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,025] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,025] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,025] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:13,052] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,008] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,008] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,012] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M07_featureCounts.out [2023-12-12 15:34:14,977] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:14,979] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:14,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M07_metrics [2023-12-12 15:34:15,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M19_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:15,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M19_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:15,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M19_primary_unique.bam.bai [2023-12-12 15:34:15,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M19_primary_unique.bam [2023-12-12 15:34:15,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M19_hist.pdf [2023-12-12 15:34:15,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:15,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:15,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:15,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:15,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:15,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:15,198] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,140] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:16,166] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M19_featureCounts.out [2023-12-12 15:34:17,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:17,106] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:17,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M19_metrics [2023-12-12 15:34:17,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M01_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:17,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M01_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:17,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M01_primary_unique.bam.bai [2023-12-12 15:34:17,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M01_primary_unique.bam [2023-12-12 15:34:17,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M01_hist.pdf [2023-12-12 15:34:17,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:17,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:17,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:17,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:17,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:17,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,387] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:17,407] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,337] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:18,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M01_featureCounts.out [2023-12-12 15:34:19,304] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:19,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:19,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M01_metrics [2023-12-12 15:34:19,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M22_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:19,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M22_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:19,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M22_primary_unique.bam.bai [2023-12-12 15:34:19,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M22_primary_unique.bam [2023-12-12 15:34:19,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:19,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:19,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:19,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:19,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:19,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M22_hist.pdf [2023-12-12 15:34:19,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,526] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:19,544] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,508] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:20,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M22_featureCounts.out [2023-12-12 15:34:21,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:21,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:21,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M22_metrics [2023-12-12 15:34:21,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M17_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:21,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M17_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:21,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M17_primary_unique.bam.bai [2023-12-12 15:34:21,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M17_primary_unique.bam [2023-12-12 15:34:21,581] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:21,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:21,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:21,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:21,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:21,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M17_hist.pdf [2023-12-12 15:34:21,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,666] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,666] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,666] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:21,683] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:22,622] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M17_featureCounts.out [2023-12-12 15:34:23,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:23,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:23,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M17_metrics [2023-12-12 15:34:23,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M08_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:23,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M08_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:23,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M08_primary_unique.bam [2023-12-12 15:34:23,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M08_primary_unique.bam.bai [2023-12-12 15:34:23,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M08_hist.pdf [2023-12-12 15:34:23,637] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:23,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:23,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:23,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:23,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:23,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,701] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,701] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,702] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,702] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,702] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,702] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:23,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,633] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,635] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,635] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,635] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,636] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,636] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,636] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:24,653] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M08_featureCounts.out [2023-12-12 15:34:25,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:25,566] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:25,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M08_metrics [2023-12-12 15:34:25,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M11_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:25,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M11_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:25,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M11_primary_unique.bam [2023-12-12 15:34:25,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M11_primary_unique.bam.bai [2023-12-12 15:34:25,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M11_hist.pdf [2023-12-12 15:34:25,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:25,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:25,690] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:25,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:25,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:25,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,745] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,745] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,745] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:25,766] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,680] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,683] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:26,701] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M11_featureCounts.out [2023-12-12 15:34:27,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:27,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:27,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M11_metrics [2023-12-12 15:34:27,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M06_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:27,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M06_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:27,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M06_primary_unique.bam [2023-12-12 15:34:27,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M06_primary_unique.bam.bai [2023-12-12 15:34:27,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:27,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:27,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:27,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:27,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:27,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M06_hist.pdf [2023-12-12 15:34:27,801] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,805] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:27,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,743] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,743] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,744] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,744] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,744] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,744] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,744] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:28,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M06_featureCounts.out [2023-12-12 15:34:29,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:29,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:29,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M06_metrics [2023-12-12 15:34:29,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M21_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:29,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M21_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:29,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M21_primary_unique.bam [2023-12-12 15:34:29,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M21_primary_unique.bam.bai [2023-12-12 15:34:29,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:29,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:29,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:29,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:29,854] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:29,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M21_hist.pdf [2023-12-12 15:34:29,934] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,936] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,938] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,938] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,939] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,939] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,939] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,939] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,939] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:29,956] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,902] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,902] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,907] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,908] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:30,934] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M21_featureCounts.out [2023-12-12 15:34:31,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:31,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:31,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M21_metrics [2023-12-12 15:34:31,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M16_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:31,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M16_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:31,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M16_primary_unique.bam [2023-12-12 15:34:31,980] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M16_primary_unique.bam.bai [2023-12-12 15:34:31,980] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M16_hist.pdf [2023-12-12 15:34:31,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:31,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:31,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:31,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:31,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:32,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,072] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:32,090] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M16_featureCounts.out [2023-12-12 15:34:33,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:33,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:33,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M16_metrics [2023-12-12 15:34:33,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M10_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:33,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M10_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:34,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M10_primary_unique.bam.bai [2023-12-12 15:34:34,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M10_primary_unique.bam [2023-12-12 15:34:34,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M10_hist.pdf [2023-12-12 15:34:34,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:34,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:34,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:34,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:34,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:34,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,133] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:34,151] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,089] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:35,106] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M10_featureCounts.out [2023-12-12 15:34:36,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:36,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:36,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M10_metrics [2023-12-12 15:34:36,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M14_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:36,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M14_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:36,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M14_primary_unique.bam [2023-12-12 15:34:36,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M14_primary_unique.bam.bai [2023-12-12 15:34:36,133] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:36,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:36,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:36,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:36,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:36,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M14_hist.pdf [2023-12-12 15:34:36,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,216] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:36,234] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,158] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,161] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,161] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,161] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,162] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:37,180] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M14_featureCounts.out [2023-12-12 15:34:38,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:38,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:38,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M14_metrics [2023-12-12 15:34:38,151] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M05_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:38,151] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M05_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:38,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M05_primary_unique.bam.bai [2023-12-12 15:34:38,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M05_primary_unique.bam [2023-12-12 15:34:38,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M05_hist.pdf [2023-12-12 15:34:38,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:38,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:38,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:38,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:38,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:38,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,300] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:38,318] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,243] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,247] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,247] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,247] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,248] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,248] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,248] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:39,266] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M05_featureCounts.out [2023-12-12 15:34:40,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:40,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:40,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M05_metrics [2023-12-12 15:34:40,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M03_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:40,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M03_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:40,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M03_primary_unique.bam.bai [2023-12-12 15:34:40,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M03_primary_unique.bam [2023-12-12 15:34:40,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:40,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:40,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:40,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:40,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:40,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M03_hist.pdf [2023-12-12 15:34:40,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,372] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:40,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,304] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:41,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M03_featureCounts.out [2023-12-12 15:34:42,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:42,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:42,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M03_metrics [2023-12-12 15:34:42,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M24_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:42,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M24_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:42,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M24_primary_unique.bam.bai [2023-12-12 15:34:42,343] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M24_primary_unique.bam [2023-12-12 15:34:42,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:42,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:42,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:42,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:42,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:42,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M24_hist.pdf [2023-12-12 15:34:42,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:42,452] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,358] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,361] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:43,382] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M24_featureCounts.out [2023-12-12 15:34:44,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:44,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:44,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M24_metrics [2023-12-12 15:34:44,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M15_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:44,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M15_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:44,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M15_primary_unique.bam [2023-12-12 15:34:44,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M15_primary_unique.bam.bai [2023-12-12 15:34:44,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M15_hist.pdf [2023-12-12 15:34:44,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:44,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:44,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:44,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:44,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:44,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,508] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,508] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,508] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,508] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:44,526] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,440] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:45,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M15_featureCounts.out [2023-12-12 15:34:46,377] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:46,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:46,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M15_metrics [2023-12-12 15:34:46,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M13_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:46,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M13_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:46,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M13_primary_unique.bam.bai [2023-12-12 15:34:46,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M13_primary_unique.bam [2023-12-12 15:34:46,498] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:46,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:46,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:46,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:46,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:46,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M13_hist.pdf [2023-12-12 15:34:46,583] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:46,605] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,532] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,532] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,535] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:47,552] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M13_featureCounts.out [2023-12-12 15:34:48,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:48,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:48,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M13_metrics [2023-12-12 15:34:48,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M04_CKDL230039435-1A_22GGJKLT3_L2_1.fq.gz [2023-12-12 15:34:48,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217M04_CKDL230039435-1A_22GGJKLT3_L2_2.fq.gz [2023-12-12 15:34:48,533] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M04_primary_unique.bam [2023-12-12 15:34:48,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M04_primary_unique.bam.bai [2023-12-12 15:34:48,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G217_M04_hist.pdf [2023-12-12 15:34:48,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:48,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:48,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:48,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:48,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:48,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:48,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:49,702] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G217_M04_featureCounts.out [2023-12-12 15:34:50,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:50,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:50,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G217_M04_metrics [2023-12-12 15:34:50,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-12 15:34:50,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-12 15:34:50,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-12-12 15:34:50,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-12 15:34:50,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-12 15:34:50,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-12-12 15:34:50,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-12 15:34:50,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-12-12 15:34:50,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-12 15:34:50,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-12 15:34:50,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-12 15:34:50,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-12 15:34:50,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2023-12-12 15:34:50,707] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2023-12-12 15:34:50,710] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2023-12-12 15:34:50,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M09.o2796252 [2023-12-12 15:34:50,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M09.o2796252 [2023-12-12 15:34:50,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M09.o2796252 [2023-12-12 15:34:50,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M09.o2796252 [2023-12-12 15:34:50,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M09.o2796252 [2023-12-12 15:34:50,740] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M15.o2796263 [2023-12-12 15:34:50,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M15.o2796263 [2023-12-12 15:34:50,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M15.o2796263 [2023-12-12 15:34:50,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M15.o2796263 [2023-12-12 15:34:50,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M15.o2796263 [2023-12-12 15:34:50,764] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M04.o2796241 [2023-12-12 15:34:50,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M04.o2796241 [2023-12-12 15:34:50,766] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M04.o2796241 [2023-12-12 15:34:50,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M04.o2796241 [2023-12-12 15:34:50,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M04.o2796241 [2023-12-12 15:34:50,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M21.o2796273 [2023-12-12 15:34:50,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M21.o2796273 [2023-12-12 15:34:50,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M21.o2796273 [2023-12-12 15:34:50,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M21.o2796273 [2023-12-12 15:34:50,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M21.o2796273 [2023-12-12 15:34:50,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M07.o2796248 [2023-12-12 15:34:50,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M07.o2796248 [2023-12-12 15:34:50,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M07.o2796248 [2023-12-12 15:34:50,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M07.o2796248 [2023-12-12 15:34:50,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M07.o2796248 [2023-12-12 15:34:50,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M23.o2796278 [2023-12-12 15:34:50,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M23.o2796278 [2023-12-12 15:34:50,827] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M23.o2796278 [2023-12-12 15:34:50,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M23.o2796278 [2023-12-12 15:34:50,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M23.o2796278 [2023-12-12 15:34:50,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M03.o2796239 [2023-12-12 15:34:50,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M03.o2796239 [2023-12-12 15:34:50,850] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G217_SG_20231204_G217_M03.o2796239 [2023-12-12 15:34:50,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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filesize limit: Step_06_G217_SG_20231204_G217_M07.o2798152 [2023-12-12 15:34:58,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M07.o2798152 [2023-12-12 15:34:58,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M14.o2798158 [2023-12-12 15:34:58,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M14.o2798158 [2023-12-12 15:34:58,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M14.o2798158 [2023-12-12 15:34:58,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M14.o2798158 [2023-12-12 15:34:58,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M14.o2798158 [2023-12-12 15:34:58,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M21.o2798164 [2023-12-12 15:34:58,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M21.o2798164 [2023-12-12 15:34:58,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M21.o2798164 [2023-12-12 15:34:58,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M21.o2798164 [2023-12-12 15:34:58,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M21.o2798164 [2023-12-12 15:34:58,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M04.o2798149 [2023-12-12 15:34:58,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M04.o2798149 [2023-12-12 15:34:58,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M04.o2798149 [2023-12-12 15:34:58,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M04.o2798149 [2023-12-12 15:34:58,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M04.o2798149 [2023-12-12 15:34:58,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M17.o2798161 [2023-12-12 15:34:58,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M17.o2798161 [2023-12-12 15:34:58,116] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M17.o2798161 [2023-12-12 15:34:58,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M17.o2798161 [2023-12-12 15:34:58,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M17.o2798161 [2023-12-12 15:34:58,132] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M18.o2798162 [2023-12-12 15:34:58,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M18.o2798162 [2023-12-12 15:34:58,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M18.o2798162 [2023-12-12 15:34:58,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M18.o2798162 [2023-12-12 15:34:58,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M18.o2798162 [2023-12-12 15:34:58,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M06.o2798151 [2023-12-12 15:34:58,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M06.o2798151 [2023-12-12 15:34:58,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M06.o2798151 [2023-12-12 15:34:58,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M06.o2798151 [2023-12-12 15:34:58,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M06.o2798151 [2023-12-12 15:34:58,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M22.o2798165 [2023-12-12 15:34:58,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M22.o2798165 [2023-12-12 15:34:58,177] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M22.o2798165 [2023-12-12 15:34:58,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M22.o2798165 [2023-12-12 15:34:58,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M22.o2798165 [2023-12-12 15:34:58,194] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M05.o2798150 [2023-12-12 15:34:58,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M05.o2798150 [2023-12-12 15:34:58,197] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M05.o2798150 [2023-12-12 15:34:58,197] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M05.o2798150 [2023-12-12 15:34:58,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M05.o2798150 [2023-12-12 15:34:58,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M13.o2798157 [2023-12-12 15:34:58,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M13.o2798157 [2023-12-12 15:34:58,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M13.o2798157 [2023-12-12 15:34:58,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M13.o2798157 [2023-12-12 15:34:58,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M13.o2798157 [2023-12-12 15:34:58,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M01.o2798146 [2023-12-12 15:34:58,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M01.o2798146 [2023-12-12 15:34:58,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M01.o2798146 [2023-12-12 15:34:58,237] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M01.o2798146 [2023-12-12 15:34:58,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M01.o2798146 [2023-12-12 15:34:58,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M24.o2798167 [2023-12-12 15:34:58,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M24.o2798167 [2023-12-12 15:34:58,262] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M24.o2798167 [2023-12-12 15:34:58,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M24.o2798167 [2023-12-12 15:34:58,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M24.o2798167 [2023-12-12 15:34:58,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M08.o2798153 [2023-12-12 15:34:58,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M08.o2798153 [2023-12-12 15:34:58,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M08.o2798153 [2023-12-12 15:34:58,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M08.o2798153 [2023-12-12 15:34:58,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M08.o2798153 [2023-12-12 15:34:58,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M16.o2798160 [2023-12-12 15:34:58,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M16.o2798160 [2023-12-12 15:34:58,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M16.o2798160 [2023-12-12 15:34:58,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M16.o2798160 [2023-12-12 15:34:58,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M16.o2798160 [2023-12-12 15:34:58,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M03.o2798148 [2023-12-12 15:34:58,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M03.o2798148 [2023-12-12 15:34:58,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M03.o2798148 [2023-12-12 15:34:58,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M03.o2798148 [2023-12-12 15:34:58,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M03.o2798148 [2023-12-12 15:34:58,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M19.o2798163 [2023-12-12 15:34:58,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M19.o2798163 [2023-12-12 15:34:58,340] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M19.o2798163 [2023-12-12 15:34:58,340] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M19.o2798163 [2023-12-12 15:34:58,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M19.o2798163 [2023-12-12 15:34:58,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M15.o2798159 [2023-12-12 15:34:58,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M15.o2798159 [2023-12-12 15:34:58,356] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M15.o2798159 [2023-12-12 15:34:58,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M15.o2798159 [2023-12-12 15:34:58,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M15.o2798159 [2023-12-12 15:34:58,371] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M09.o2798154 [2023-12-12 15:34:58,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M09.o2798154 [2023-12-12 15:34:58,374] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M09.o2798154 [2023-12-12 15:34:58,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M09.o2798154 [2023-12-12 15:34:58,378] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M09.o2798154 [2023-12-12 15:34:58,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M10.o2798155 [2023-12-12 15:34:58,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M10.o2798155 [2023-12-12 15:34:58,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M10.o2798155 [2023-12-12 15:34:58,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M10.o2798155 [2023-12-12 15:34:58,400] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M10.o2798155 [2023-12-12 15:34:58,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M02.o2798147 [2023-12-12 15:34:58,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M02.o2798147 [2023-12-12 15:34:58,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M02.o2798147 [2023-12-12 15:34:58,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M02.o2798147 [2023-12-12 15:34:58,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M02.o2798147 [2023-12-12 15:34:58,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M11.o2798156 [2023-12-12 15:34:58,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M11.o2798156 [2023-12-12 15:34:58,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M11.o2798156 [2023-12-12 15:34:58,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M11.o2798156 [2023-12-12 15:34:58,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G217_SG_20231204_G217_M11.o2798156 [2023-12-12 15:34:58,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2023-12-12 15:34:58,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2023-12-12 15:34:58,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2023-12-12 15:34:58,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-12-12 15:34:58,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-12-12 15:34:58,469] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2023-12-12 15:34:58,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:58,478] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-12-12 15:34:59,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-12-12 15:34:59,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-12-12 15:34:59,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-12-12 15:34:59,231] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-12-12 15:34:59,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-12-12 15:34:59,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-12-12 15:34:59,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-12-12 15:34:59,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-12-12 15:34:59,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-12-12 15:34:59,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-12-12 15:35:02,556] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-12-12 15:35:02,581] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-12-12 15:35:02,585] multiqc [DEBUG ] No samples found: custom_content [2023-12-12 15:35:02,596] multiqc [DEBUG ] No samples found: ccs [2023-12-12 15:35:02,630] multiqc [DEBUG ] No samples found: ngsderive [2023-12-12 15:35:02,641] multiqc [DEBUG ] No samples found: purple [2023-12-12 15:35:02,648] multiqc [DEBUG ] No samples found: conpair [2023-12-12 15:35:02,687] multiqc [DEBUG ] No samples found: lima [2023-12-12 15:35:02,719] multiqc [DEBUG ] No samples found: peddy [2023-12-12 15:35:02,735] multiqc [DEBUG ] No samples found: somalier [2023-12-12 15:35:02,764] multiqc [DEBUG ] No samples found: methylQA [2023-12-12 15:35:02,812] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2023-12-12 15:35:02,812] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2023-12-12 15:35:02,812] multiqc [DEBUG ] No samples found: mosdepth [2023-12-12 15:35:02,822] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-12-12 15:35:02,849] multiqc [DEBUG ] No samples found: qualimap [2023-12-12 15:35:02,877] multiqc [DEBUG ] No samples found: preseq [2023-12-12 15:35:02,901] multiqc [DEBUG ] No samples found: quast [2023-12-12 15:35:02,925] multiqc [DEBUG ] No samples found: qorts [2023-12-12 15:35:02,952] multiqc [DEBUG ] No samples found: rna_seqc [2023-12-12 15:35:02,987] multiqc [DEBUG ] No samples found: rockhopper [2023-12-12 15:35:03,032] multiqc [DEBUG ] No samples found: rsem [2023-12-12 15:35:03,090] multiqc.modules.rseqc.rseqc [INFO ] Found 22 infer_experiment reports [2023-12-12 15:35:03,099] multiqc [DEBUG ] No samples found: busco [2023-12-12 15:35:03,109] multiqc [DEBUG ] No samples found: bustools [2023-12-12 15:35:03,143] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-12-12 15:35:03,171] multiqc [DEBUG ] No samples found: gffcompare [2023-12-12 15:35:03,180] multiqc [DEBUG ] No samples found: disambiguate [2023-12-12 15:35:03,216] multiqc [DEBUG ] No samples found: supernova [2023-12-12 15:35:03,289] multiqc [DEBUG ] No samples found: deeptools [2023-12-12 15:35:03,321] multiqc [DEBUG ] No samples found: sargasso [2023-12-12 15:35:03,348] multiqc [DEBUG ] No samples found: verifybamid [2023-12-12 15:35:03,373] multiqc [DEBUG ] No samples found: mirtrace [2023-12-12 15:35:03,383] multiqc [DEBUG ] No samples found: happy [2023-12-12 15:35:03,392] multiqc [DEBUG ] No samples found: mirtop [2023-12-12 15:35:03,424] multiqc [DEBUG ] No samples found: sambamba [2023-12-12 15:35:03,437] multiqc [DEBUG ] No samples found: homer [2023-12-12 15:35:03,470] multiqc [DEBUG ] No samples found: hops [2023-12-12 15:35:03,482] multiqc [DEBUG ] No samples found: macs2 [2023-12-12 15:35:03,490] multiqc [DEBUG ] No samples found: theta2 [2023-12-12 15:35:03,521] multiqc [DEBUG ] No samples found: snpeff [2023-12-12 15:35:03,563] multiqc [DEBUG ] No samples found: gatk [2023-12-12 15:35:03,572] multiqc [DEBUG ] No samples found: htseq [2023-12-12 15:35:03,582] multiqc [DEBUG ] No samples found: bcftools [2023-12-12 15:35:03,601] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M02_sorted [2023-12-12 15:35:03,602] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M23_sorted [2023-12-12 15:35:03,602] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M18_sorted [2023-12-12 15:35:03,603] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M09_sorted [2023-12-12 15:35:03,604] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M07_sorted [2023-12-12 15:35:03,605] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M19_sorted [2023-12-12 15:35:03,606] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M01_sorted [2023-12-12 15:35:03,606] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M22_sorted [2023-12-12 15:35:03,607] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M17_sorted [2023-12-12 15:35:03,608] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M08_sorted [2023-12-12 15:35:03,609] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M11_sorted [2023-12-12 15:35:03,610] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M06_sorted [2023-12-12 15:35:03,610] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M21_sorted [2023-12-12 15:35:03,610] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M16_sorted [2023-12-12 15:35:03,611] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M10_sorted [2023-12-12 15:35:03,611] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M14_sorted [2023-12-12 15:35:03,612] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M05_sorted [2023-12-12 15:35:03,612] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M03_sorted [2023-12-12 15:35:03,613] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M24_sorted [2023-12-12 15:35:03,613] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M15_sorted [2023-12-12 15:35:03,614] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M13_sorted [2023-12-12 15:35:03,614] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G217_M04_sorted [2023-12-12 15:35:03,614] multiqc.modules.featureCounts.feature_counts [INFO ] Found 22 reports [2023-12-12 15:35:03,665] multiqc [DEBUG ] No samples found: fgbio [2023-12-12 15:35:03,744] multiqc [DEBUG ] No samples found: dragen [2023-12-12 15:35:03,779] multiqc [DEBUG ] No samples found: dedup [2023-12-12 15:35:03,810] multiqc [DEBUG ] No samples found: damageprofiler [2023-12-12 15:35:04,056] multiqc [DEBUG ] No samples found: biobambam2 [2023-12-12 15:35:04,073] multiqc [DEBUG ] No samples found: jcvi [2023-12-12 15:35:04,081] multiqc [DEBUG ] No samples found: mtnucratio [2023-12-12 15:35:05,138] multiqc.modules.picard.picard [INFO ] Found 22 InsertSizeMetrics reports [2023-12-12 15:35:05,166] multiqc.modules.picard.picard [INFO ] Found 22 RnaSeqMetrics reports [2023-12-12 15:35:05,190] multiqc [DEBUG ] No samples found: vep [2023-12-12 15:35:05,221] multiqc [DEBUG ] No samples found: sentieon [2023-12-12 15:35:05,234] multiqc [DEBUG ] No samples found: prokka [2023-12-12 15:35:05,266] multiqc [DEBUG ] No samples found: qc3C [2023-12-12 15:35:05,299] multiqc [DEBUG ] No samples found: nanostat [2023-12-12 15:35:05,309] multiqc [DEBUG ] No samples found: samblaster [2023-12-12 15:35:05,409] multiqc.modules.samtools.samtools [INFO ] Found 66 flagstat reports [2023-12-12 15:35:05,440] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-12-12 15:35:05,447] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2023-12-12 15:35:05,455] multiqc [DEBUG ] No samples found: bamtools [2023-12-12 15:35:05,463] multiqc [DEBUG ] No samples found: jellyfish [2023-12-12 15:35:05,474] multiqc [DEBUG ] No samples found: vcftools [2023-12-12 15:35:05,480] multiqc [DEBUG ] No samples found: longranger [2023-12-12 15:35:05,503] multiqc [DEBUG ] No samples found: stacks [2023-12-12 15:35:05,511] multiqc [DEBUG ] No samples found: varscan2 [2023-12-12 15:35:05,530] multiqc [DEBUG ] No samples found: snippy [2023-12-12 15:35:05,601] multiqc [DEBUG ] No samples found: bbmap [2023-12-12 15:35:05,635] multiqc [DEBUG ] No samples found: bismark [2023-12-12 15:35:05,666] multiqc [DEBUG ] No samples found: biscuit [2023-12-12 15:35:05,678] multiqc [DEBUG ] No samples found: hicexplorer [2023-12-12 15:35:05,715] multiqc [DEBUG ] No samples found: hicup [2023-12-12 15:35:05,749] multiqc [DEBUG ] No samples found: hicpro [2023-12-12 15:35:05,759] multiqc [DEBUG ] No samples found: salmon [2023-12-12 15:35:05,767] multiqc [DEBUG ] No samples found: kallisto [2023-12-12 15:35:05,801] multiqc [DEBUG ] No samples found: slamdunk [2023-12-12 15:35:05,851] multiqc.modules.star.star [INFO ] Found 22 reports [2023-12-12 15:35:05,858] multiqc [DEBUG ] No samples found: hisat2 [2023-12-12 15:35:05,888] multiqc [DEBUG ] No samples found: tophat [2023-12-12 15:35:05,924] multiqc [DEBUG ] No samples found: bowtie2 [2023-12-12 15:35:05,933] multiqc [DEBUG ] No samples found: bowtie1 [2023-12-12 15:35:05,962] multiqc [DEBUG ] No samples found: snpsplit [2023-12-12 15:35:05,989] multiqc [DEBUG ] No samples found: odgi [2023-12-12 15:35:06,000] multiqc [DEBUG ] No samples found: pangolin [2023-12-12 15:35:06,008] multiqc [DEBUG ] No samples found: kat [2023-12-12 15:35:06,016] multiqc [DEBUG ] No samples found: leehom [2023-12-12 15:35:06,046] multiqc [DEBUG ] No samples found: adapterRemoval [2023-12-12 15:35:06,053] multiqc [DEBUG ] No samples found: clipandmerge [2023-12-12 15:35:06,089] multiqc [DEBUG ] No samples found: cutadapt [2023-12-12 15:35:06,098] multiqc [DEBUG ] No samples found: flexbar [2023-12-12 15:35:06,108] multiqc [DEBUG ] No samples found: kaiju [2023-12-12 15:35:06,115] multiqc [DEBUG ] No samples found: kraken [2023-12-12 15:35:06,125] multiqc [DEBUG ] No samples found: malt [2023-12-12 15:35:06,168] multiqc [DEBUG ] No samples found: trimmomatic [2023-12-12 15:35:06,178] multiqc [DEBUG ] No samples found: sickle [2023-12-12 15:35:06,206] multiqc [DEBUG ] No samples found: skewer [2023-12-12 15:35:06,216] multiqc [DEBUG ] No samples found: sortmerna [2023-12-12 15:35:06,223] multiqc [DEBUG ] No samples found: biobloomtools [2023-12-12 15:35:06,262] multiqc [DEBUG ] No samples found: fastq_screen [2023-12-12 15:35:06,281] multiqc [DEBUG ] No samples found: afterqc [2023-12-12 15:35:06,340] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,364] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,393] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,418] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,442] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,461] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,480] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,503] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,532] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,550] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,564] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,586] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,607] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,631] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,658] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,677] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,699] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,714] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,732] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,755] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,775] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,793] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2023-12-12 15:35:06,794] multiqc.modules.fastp.fastp [INFO ] Found 22 reports [2023-12-12 15:35:09,210] multiqc.modules.fastqc.fastqc [INFO ] Found 44 reports [2023-12-12 15:35:09,918] multiqc [DEBUG ] No samples found: pychopper [2023-12-12 15:35:09,939] multiqc [DEBUG ] No samples found: pycoqc [2023-12-12 15:35:09,946] multiqc [DEBUG ] No samples found: minionqc [2023-12-12 15:35:09,980] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-12-12 15:35:10,017] multiqc [DEBUG ] No samples found: clusterflow [2023-12-12 15:35:10,054] multiqc [DEBUG ] No samples found: bcl2fastq [2023-12-12 15:35:10,064] multiqc [DEBUG ] No samples found: bclconvert [2023-12-12 15:35:10,083] multiqc [DEBUG ] No samples found: interop [2023-12-12 15:35:10,109] multiqc [DEBUG ] No samples found: ivar [2023-12-12 15:35:10,146] multiqc [DEBUG ] No samples found: flash [2023-12-12 15:35:10,157] multiqc [DEBUG ] No samples found: seqyclean [2023-12-12 15:35:10,165] multiqc [DEBUG ] No samples found: optitype [2023-12-12 15:35:10,271] multiqc [INFO ] Compressing plot data [2023-12-12 15:35:12,706] multiqc [INFO ] Report : multiqc_report.html [2023-12-12 15:35:12,707] multiqc [INFO ] Data : multiqc_data [2023-12-12 15:35:12,707] multiqc [DEBUG ] Moving data file from '/scratch/tmpkkc1l01y/multiqc_data' to '/projectnb/wax-dk/max/G217_SG_20231204/Scripts/14_final_summary/G217_SG_20231204_multiqc_report/multiqc_data' [2023-12-12 15:35:13,457] multiqc [INFO ] MultiQC complete