[2024-02-26 16:21:18,563] multiqc [DEBUG ] This is MultiQC v1.11 [2024-02-26 16:21:18,563] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-02-26 16:21:18,563] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-02-26 16:21:18,563] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-02-26 16:21:18,564] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-02-26 16:21:18,564] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-02-26 16:21:18,564] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G221_RNASEQ_MS316/SAMPLES /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/06_CollectMetrics/ [2024-02-26 16:21:18,948] multiqc [WARNING] MultiQC Version v1.20 now available! [2024-02-26 16:21:18,949] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G221_RNASEQ_MS316/SAMPLES /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/06_CollectMetrics/ [2024-02-26 16:21:18,949] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/14_final_summary/G221_RNASEQ_MS316_multiqc_report [2024-02-26 16:21:18,949] multiqc [DEBUG ] Template : default [2024-02-26 16:21:18,949] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-02-26 16:21:18,950] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-02-26 16:21:18,963] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpphb2fwwy [2024-02-26 16:21:19,048] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G221_RNASEQ_MS316/SAMPLES [2024-02-26 16:21:19,048] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/03_FASTQC [2024-02-26 16:21:19,048] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/06_CollectMetrics [2024-02-26 16:21:19,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:19,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:19,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,326] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,327] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:19,345] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:20,322] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2024-02-26 16:21:21,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:21,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:21,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M78_hist.pdf [2024-02-26 16:21:21,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:21,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:21,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:21,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:21,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:21,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,499] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,499] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,500] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,500] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,500] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,500] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,500] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:21,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,463] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,463] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,463] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,463] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:22,484] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M78_featureCounts.out [2024-02-26 16:21:23,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:23,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:23,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M78_metrics [2024-02-26 16:21:23,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:23,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:23,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,476] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,477] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,482] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,482] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,482] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,483] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,483] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,483] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,483] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:23,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,472] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,472] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,477] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,477] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,477] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,477] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,478] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,478] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,478] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:24,502] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2024-02-26 16:21:25,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:25,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:25,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M75_hist.pdf [2024-02-26 16:21:25,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:25,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:25,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:25,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:25,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:25,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,701] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:25,724] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,677] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,680] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:26,707] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M75_featureCounts.out [2024-02-26 16:21:27,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:27,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:27,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M75_metrics [2024-02-26 16:21:27,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:27,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:27,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_hist.pdf [2024-02-26 16:21:27,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:27,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:27,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:27,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:27,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:27,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,955] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:27,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,933] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,938] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,939] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:28,962] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2024-02-26 16:21:29,906] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:29,908] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:29,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_metrics [2024-02-26 16:21:29,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:29,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:30,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,045] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:30,067] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:31,108] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2024-02-26 16:21:32,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:32,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:32,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,117] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,122] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,122] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,123] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,123] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,123] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,123] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,123] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:32,146] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,107] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:33,125] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2024-02-26 16:21:34,059] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:34,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:34,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:34,158] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,094] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,097] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,101] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,102] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:35,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2024-02-26 16:21:36,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:36,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:36,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:36,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:36,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:36,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:36,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:36,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_hist.pdf [2024-02-26 16:21:36,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,302] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:36,323] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,275] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:37,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2024-02-26 16:21:38,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:38,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:38,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_metrics [2024-02-26 16:21:38,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:38,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:38,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,287] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,291] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,291] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,292] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,292] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,292] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,292] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,292] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:38,312] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,258] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,258] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:39,279] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2024-02-26 16:21:40,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:40,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:40,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:40,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:40,350] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:40,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:40,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:40,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M76_hist.pdf [2024-02-26 16:21:40,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,474] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,479] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:40,500] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,438] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,439] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,439] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,439] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:41,461] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M76_featureCounts.out [2024-02-26 16:21:42,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:42,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:42,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M76_metrics [2024-02-26 16:21:42,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:42,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:42,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:42,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:42,549] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:42,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:42,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:42,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_hist.pdf [2024-02-26 16:21:42,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,672] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,672] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:42,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,671] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,680] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,681] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:43,703] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2024-02-26 16:21:44,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:44,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:44,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_metrics [2024-02-26 16:21:44,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:44,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:44,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:44,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:45,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2024-02-26 16:21:46,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:46,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:46,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:46,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:46,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:46,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:46,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:46,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_hist.pdf [2024-02-26 16:21:46,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,900] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:46,922] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,887] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:47,910] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2024-02-26 16:21:48,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:48,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:48,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_metrics [2024-02-26 16:21:48,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:48,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:48,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:49,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:49,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:49,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:49,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:49,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M79_hist.pdf [2024-02-26 16:21:49,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,112] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,112] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,112] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,112] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,113] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,113] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,113] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:49,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:50,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M79_featureCounts.out [2024-02-26 16:21:51,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:51,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:51,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M79_metrics [2024-02-26 16:21:51,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:51,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:51,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M77_hist.pdf [2024-02-26 16:21:51,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:51,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:51,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:51,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:51,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:51,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,327] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,332] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,332] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:51,355] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,342] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,350] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:52,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M77_featureCounts.out [2024-02-26 16:21:53,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:53,340] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:53,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M77_metrics [2024-02-26 16:21:53,386] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:53,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:53,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:53,487] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,470] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,470] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,475] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,475] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,475] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,476] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,476] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,476] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,476] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:54,498] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2024-02-26 16:21:55,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:21:55,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:21:55,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,526] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:55,547] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,538] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,543] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:56,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2024-02-26 16:21:57,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:57,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:57,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_hist.pdf [2024-02-26 16:21:57,679] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:57,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:57,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:57,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:57,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:57,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,797] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:57,824] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,802] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:58,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2024-02-26 16:21:59,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:59,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:59,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_metrics [2024-02-26 16:21:59,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:21:59,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:21:59,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_hist.pdf [2024-02-26 16:21:59,922] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:21:59,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:21:59,925] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:21:59,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:21:59,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:22:00,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,019] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,041] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:00,997] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,002] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2024-02-26 16:22:01,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:22:01,938] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:22:01,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_metrics [2024-02-26 16:22:01,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2024-02-26 16:22:02,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2024-02-26 16:22:02,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:02,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:02,126] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:02,126] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:02,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:02,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M80_hist.pdf [2024-02-26 16:22:02,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,241] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:02,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:03,252] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M80_featureCounts.out [2024-02-26 16:22:04,184] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:04,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:04,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M80_metrics [2024-02-26 16:22:04,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:22:04,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:22:04,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,293] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,298] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,298] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,299] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,299] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,299] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,299] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,299] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:04,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,278] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,278] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,283] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:05,304] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2024-02-26 16:22:06,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2024-02-26 16:22:06,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2024-02-26 16:22:06,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,302] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:06,323] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,302] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,302] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2024-02-26 16:22:07,302] multiqc [DEBUG ] File ignored by 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filesize limit: Step_06_G221_RNASEQ_MS316_G221_M69.o4790010 [2024-02-26 16:22:14,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M77.o4790020 [2024-02-26 16:22:14,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M77.o4790020 [2024-02-26 16:22:14,860] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M77.o4790020 [2024-02-26 16:22:14,860] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M77.o4790020 [2024-02-26 16:22:14,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M77.o4790020 [2024-02-26 16:22:14,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M79.o4790022 [2024-02-26 16:22:14,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M79.o4790022 [2024-02-26 16:22:14,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M79.o4790022 [2024-02-26 16:22:14,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M79.o4790022 [2024-02-26 16:22:14,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M79.o4790022 [2024-02-26 16:22:14,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M75.o4790016 [2024-02-26 16:22:14,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M75.o4790016 [2024-02-26 16:22:14,893] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M75.o4790016 [2024-02-26 16:22:14,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M75.o4790016 [2024-02-26 16:22:14,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M75.o4790016 [2024-02-26 16:22:14,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M73.o4790014 [2024-02-26 16:22:14,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M73.o4790014 [2024-02-26 16:22:14,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M73.o4790014 [2024-02-26 16:22:14,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M73.o4790014 [2024-02-26 16:22:14,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M73.o4790014 [2024-02-26 16:22:14,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M74.o4790015 [2024-02-26 16:22:14,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M74.o4790015 [2024-02-26 16:22:14,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M74.o4790015 [2024-02-26 16:22:14,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M74.o4790015 [2024-02-26 16:22:14,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M74.o4790015 [2024-02-26 16:22:14,940] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M76.o4790017 [2024-02-26 16:22:14,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M76.o4790017 [2024-02-26 16:22:14,942] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M76.o4790017 [2024-02-26 16:22:14,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M76.o4790017 [2024-02-26 16:22:14,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M76.o4790017 [2024-02-26 16:22:14,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M78.o4790021 [2024-02-26 16:22:14,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M78.o4790021 [2024-02-26 16:22:14,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M78.o4790021 [2024-02-26 16:22:14,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M78.o4790021 [2024-02-26 16:22:14,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M78.o4790021 [2024-02-26 16:22:14,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M72.o4790013 [2024-02-26 16:22:14,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M72.o4790013 [2024-02-26 16:22:14,984] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M72.o4790013 [2024-02-26 16:22:14,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M72.o4790013 [2024-02-26 16:22:14,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M72.o4790013 [2024-02-26 16:22:15,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M80.o4790023 [2024-02-26 16:22:15,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M80.o4790023 [2024-02-26 16:22:15,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M80.o4790023 [2024-02-26 16:22:15,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M80.o4790023 [2024-02-26 16:22:15,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M80.o4790023 [2024-02-26 16:22:15,018] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M70.o4790011 [2024-02-26 16:22:15,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M70.o4790011 [2024-02-26 16:22:15,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M70.o4790011 [2024-02-26 16:22:15,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M70.o4790011 [2024-02-26 16:22:15,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_MS316_G221_M70.o4790011 [2024-02-26 16:22:15,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-02-26 16:22:15,037] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-02-26 16:22:15,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-02-26 16:22:15,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-02-26 16:22:15,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-02-26 16:22:15,062] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,064] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,067] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-02-26 16:22:15,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-02-26 16:22:15,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-02-26 16:22:15,820] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-02-26 16:22:15,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-02-26 16:22:15,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-02-26 16:22:15,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-02-26 16:22:15,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-02-26 16:22:15,858] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-02-26 16:22:15,858] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-02-26 16:22:15,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-02-26 16:22:16,334] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-02-26 16:22:16,335] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-02-26 16:22:16,338] multiqc [DEBUG ] No samples found: custom_content [2024-02-26 16:22:16,343] multiqc [DEBUG ] No samples found: ccs [2024-02-26 16:22:16,348] multiqc [DEBUG ] No samples found: ngsderive [2024-02-26 16:22:16,353] multiqc [DEBUG ] No samples found: purple [2024-02-26 16:22:16,359] multiqc [DEBUG ] No samples found: conpair [2024-02-26 16:22:16,365] multiqc [DEBUG ] No samples found: lima [2024-02-26 16:22:16,371] multiqc [DEBUG ] No samples found: peddy [2024-02-26 16:22:16,377] multiqc [DEBUG ] No samples found: somalier [2024-02-26 16:22:16,383] multiqc [DEBUG ] No samples found: methylQA [2024-02-26 16:22:16,392] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-02-26 16:22:16,392] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-02-26 16:22:16,392] multiqc [DEBUG ] No samples found: mosdepth [2024-02-26 16:22:16,400] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-02-26 16:22:16,404] multiqc [DEBUG ] No samples found: qualimap [2024-02-26 16:22:16,409] multiqc [DEBUG ] No samples found: preseq [2024-02-26 16:22:16,415] multiqc [DEBUG ] No samples found: quast [2024-02-26 16:22:16,420] multiqc [DEBUG ] No samples found: qorts [2024-02-26 16:22:16,424] multiqc [DEBUG ] No samples found: rna_seqc [2024-02-26 16:22:16,429] multiqc [DEBUG ] No samples found: rockhopper [2024-02-26 16:22:16,434] multiqc [DEBUG ] No samples found: rsem [2024-02-26 16:22:16,469] multiqc.modules.rseqc.rseqc [INFO ] Found 24 infer_experiment reports [2024-02-26 16:22:16,479] multiqc [DEBUG ] No samples found: busco [2024-02-26 16:22:16,485] multiqc [DEBUG ] No samples found: bustools [2024-02-26 16:22:16,496] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-02-26 16:22:16,505] multiqc [DEBUG ] No samples found: gffcompare [2024-02-26 16:22:16,512] multiqc [DEBUG ] No samples found: disambiguate [2024-02-26 16:22:16,518] multiqc [DEBUG ] No samples found: supernova [2024-02-26 16:22:16,534] multiqc [DEBUG ] No samples found: deeptools [2024-02-26 16:22:16,543] multiqc [DEBUG ] No samples found: sargasso [2024-02-26 16:22:16,550] multiqc [DEBUG ] No samples found: verifybamid [2024-02-26 16:22:16,556] multiqc [DEBUG ] No samples found: mirtrace [2024-02-26 16:22:16,560] multiqc [DEBUG ] No samples found: happy [2024-02-26 16:22:16,564] multiqc [DEBUG ] No samples found: mirtop [2024-02-26 16:22:16,570] multiqc [DEBUG ] No samples found: sambamba [2024-02-26 16:22:16,578] multiqc [DEBUG ] No samples found: homer [2024-02-26 16:22:16,586] multiqc [DEBUG ] No samples found: hops [2024-02-26 16:22:16,592] multiqc [DEBUG ] No samples found: macs2 [2024-02-26 16:22:16,597] multiqc [DEBUG ] No samples found: theta2 [2024-02-26 16:22:16,602] multiqc [DEBUG ] No samples found: snpeff [2024-02-26 16:22:16,609] multiqc [DEBUG ] No samples found: gatk [2024-02-26 16:22:16,614] multiqc [DEBUG ] No samples found: htseq [2024-02-26 16:22:16,620] multiqc [DEBUG ] No samples found: bcftools [2024-02-26 16:22:16,627] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M68_sorted [2024-02-26 16:22:16,628] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M78_sorted [2024-02-26 16:22:16,630] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M64_sorted [2024-02-26 16:22:16,631] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M75_sorted [2024-02-26 16:22:16,632] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted [2024-02-26 16:22:16,634] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M71_sorted [2024-02-26 16:22:16,636] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M69_sorted [2024-02-26 16:22:16,639] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M65_sorted [2024-02-26 16:22:16,640] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted [2024-02-26 16:22:16,642] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M61_sorted [2024-02-26 16:22:16,644] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M76_sorted [2024-02-26 16:22:16,645] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted [2024-02-26 16:22:16,647] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M72_sorted [2024-02-26 16:22:16,649] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted [2024-02-26 16:22:16,650] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M79_sorted [2024-02-26 16:22:16,651] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M77_sorted [2024-02-26 16:22:16,652] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M66_sorted [2024-02-26 16:22:16,653] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M62_sorted [2024-02-26 16:22:16,654] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted [2024-02-26 16:22:16,655] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted [2024-02-26 16:22:16,656] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M80_sorted [2024-02-26 16:22:16,656] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M67_sorted [2024-02-26 16:22:16,657] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M63_sorted [2024-02-26 16:22:16,658] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M70_sorted [2024-02-26 16:22:16,658] multiqc.modules.featureCounts.feature_counts [INFO ] Found 24 reports [2024-02-26 16:22:16,672] multiqc [DEBUG ] No samples found: fgbio [2024-02-26 16:22:16,686] multiqc [DEBUG ] No samples found: dragen [2024-02-26 16:22:16,691] multiqc [DEBUG ] No samples found: dedup [2024-02-26 16:22:16,697] multiqc [DEBUG ] No samples found: damageprofiler [2024-02-26 16:22:16,724] multiqc [DEBUG ] No samples found: biobambam2 [2024-02-26 16:22:16,729] multiqc [DEBUG ] No samples found: jcvi [2024-02-26 16:22:16,735] multiqc [DEBUG ] No samples found: mtnucratio [2024-02-26 16:22:17,304] multiqc.modules.picard.picard [INFO ] Found 12 InsertSizeMetrics reports [2024-02-26 16:22:17,325] multiqc.modules.picard.picard [INFO ] Found 12 RnaSeqMetrics reports [2024-02-26 16:22:17,330] multiqc [DEBUG ] No samples found: vep [2024-02-26 16:22:17,338] multiqc [DEBUG ] No samples found: sentieon [2024-02-26 16:22:17,343] multiqc [DEBUG ] No samples found: prokka [2024-02-26 16:22:17,349] multiqc [DEBUG ] No samples found: qc3C [2024-02-26 16:22:17,363] multiqc [DEBUG ] No samples found: nanostat [2024-02-26 16:22:17,370] multiqc [DEBUG ] No samples found: samblaster [2024-02-26 16:22:17,386] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,387] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,388] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,392] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,394] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,395] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,396] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,399] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,401] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,403] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,407] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,409] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,411] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,413] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,417] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,418] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,419] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,419] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,422] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,424] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,426] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,426] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,427] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-02-26 16:22:17,431] multiqc.modules.samtools.samtools [INFO ] Found 37 flagstat reports [2024-02-26 16:22:17,436] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-02-26 16:22:17,441] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-02-26 16:22:17,446] multiqc [DEBUG ] No samples found: bamtools [2024-02-26 16:22:17,451] multiqc [DEBUG ] No samples found: jellyfish [2024-02-26 16:22:17,462] multiqc [DEBUG ] No samples found: vcftools [2024-02-26 16:22:17,468] multiqc [DEBUG ] No samples found: longranger [2024-02-26 16:22:17,473] multiqc [DEBUG ] No samples found: stacks [2024-02-26 16:22:17,478] multiqc [DEBUG ] No samples found: varscan2 [2024-02-26 16:22:17,483] multiqc [DEBUG ] No samples found: snippy [2024-02-26 16:22:17,500] multiqc [DEBUG ] No samples found: bbmap [2024-02-26 16:22:17,506] multiqc [DEBUG ] No samples found: bismark [2024-02-26 16:22:17,512] multiqc [DEBUG ] No samples found: biscuit [2024-02-26 16:22:17,518] multiqc [DEBUG ] No samples found: hicexplorer [2024-02-26 16:22:17,525] multiqc [DEBUG ] No samples found: hicup [2024-02-26 16:22:17,529] multiqc [DEBUG ] No samples found: hicpro [2024-02-26 16:22:17,534] multiqc [DEBUG ] No samples found: salmon [2024-02-26 16:22:17,538] multiqc [DEBUG ] No samples found: kallisto [2024-02-26 16:22:17,543] multiqc [DEBUG ] No samples found: slamdunk [2024-02-26 16:22:17,565] multiqc.modules.star.star [INFO ] Found 12 reports [2024-02-26 16:22:17,570] multiqc [DEBUG ] No samples found: hisat2 [2024-02-26 16:22:17,575] multiqc [DEBUG ] No samples found: tophat [2024-02-26 16:22:17,580] multiqc [DEBUG ] No samples found: bowtie2 [2024-02-26 16:22:17,585] multiqc [DEBUG ] No samples found: bowtie1 [2024-02-26 16:22:17,590] multiqc [DEBUG ] No samples found: snpsplit [2024-02-26 16:22:17,596] multiqc [DEBUG ] No samples found: odgi [2024-02-26 16:22:17,601] multiqc [DEBUG ] No samples found: pangolin [2024-02-26 16:22:17,606] multiqc [DEBUG ] No samples found: kat [2024-02-26 16:22:17,611] multiqc [DEBUG ] No samples found: leehom [2024-02-26 16:22:17,616] multiqc [DEBUG ] No samples found: adapterRemoval [2024-02-26 16:22:17,620] multiqc [DEBUG ] No samples found: clipandmerge [2024-02-26 16:22:17,624] multiqc [DEBUG ] No samples found: cutadapt [2024-02-26 16:22:17,629] multiqc [DEBUG ] No samples found: flexbar [2024-02-26 16:22:17,638] multiqc [DEBUG ] No samples found: kaiju [2024-02-26 16:22:17,647] multiqc [DEBUG ] No samples found: kraken [2024-02-26 16:22:17,655] multiqc [DEBUG ] No samples found: malt [2024-02-26 16:22:17,664] multiqc [DEBUG ] No samples found: trimmomatic [2024-02-26 16:22:17,670] multiqc [DEBUG ] No samples found: sickle [2024-02-26 16:22:17,678] multiqc [DEBUG ] No samples found: skewer [2024-02-26 16:22:17,686] multiqc [DEBUG ] No samples found: sortmerna [2024-02-26 16:22:17,693] multiqc [DEBUG ] No samples found: biobloomtools [2024-02-26 16:22:17,699] multiqc [DEBUG ] No samples found: fastq_screen [2024-02-26 16:22:17,708] multiqc [DEBUG ] No samples found: afterqc [2024-02-26 16:22:17,732] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,749] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,770] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,784] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,803] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,819] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,842] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,863] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,884] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,897] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,915] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,947] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-02-26 16:22:17,949] multiqc.modules.fastp.fastp [INFO ] Found 12 reports [2024-02-26 16:22:19,837] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2024-02-26 16:22:20,187] multiqc [DEBUG ] No samples found: pychopper [2024-02-26 16:22:20,193] multiqc [DEBUG ] No samples found: pycoqc [2024-02-26 16:22:20,197] multiqc [DEBUG ] No samples found: minionqc [2024-02-26 16:22:20,202] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-02-26 16:22:20,207] multiqc [DEBUG ] No samples found: clusterflow [2024-02-26 16:22:20,211] multiqc [DEBUG ] No samples found: bcl2fastq [2024-02-26 16:22:20,217] multiqc [DEBUG ] No samples found: bclconvert [2024-02-26 16:22:20,222] multiqc [DEBUG ] No samples found: interop [2024-02-26 16:22:20,226] multiqc [DEBUG ] No samples found: ivar [2024-02-26 16:22:20,231] multiqc [DEBUG ] No samples found: flash [2024-02-26 16:22:20,235] multiqc [DEBUG ] No samples found: seqyclean [2024-02-26 16:22:20,240] multiqc [DEBUG ] No samples found: optitype [2024-02-26 16:22:20,303] multiqc [INFO ] Compressing plot data [2024-02-26 16:22:21,616] multiqc [INFO ] Report : multiqc_report.html [2024-02-26 16:22:21,617] multiqc [INFO ] Data : multiqc_data [2024-02-26 16:22:21,617] multiqc [DEBUG ] Moving data file from '/scratch/tmpphb2fwwy/multiqc_data' to '/projectnb/wax-dk/max/G221_RNASEQ_MS316/Scripts/14_final_summary/G221_RNASEQ_MS316_multiqc_report/multiqc_data' [2024-02-26 16:22:21,765] multiqc [INFO ] MultiQC complete