Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G221_M69_statistics_for_all_accepted_reads 15840020 0 2254828 0 0 0 0 0 15840020 0 100.0 nan 13585192 0 6792596 0 6792596 0 13585192 0 100.0 nan 13585192 0 0 0 0.0 nan 0 0 0 0 15840020 G221_M69_statistics_for_primary_reads 13585192 0 0 0 0 0 0 0 13585192 0 100.0 nan 13585192 0 6792596 0 6792596 0 13585192 0 100.0 nan 13585192 0 0 0 0.0 nan 0 0 0 0 13585192 G221_M69_statistics_for_primary_unique_reads 12447684 0 0 0 0 0 0 0 12447684 0 100.0 nan 12447684 0 6223842 0 6223842 0 12447684 0 100.0 nan 12447684 0 0 0 0.0 nan 0 0 0 0 12447684 G221_M70_statistics_for_all_accepted_reads 17926876 0 2428570 0 0 0 0 0 17926876 0 100.0 nan 15498306 0 7749153 0 7749153 0 15498306 0 100.0 nan 15498306 0 0 0 0.0 nan 0 0 0 0 17926876 G221_M70_statistics_for_primary_reads 15498306 0 0 0 0 0 0 0 15498306 0 100.0 nan 15498306 0 7749153 0 7749153 0 15498306 0 100.0 nan 15498306 0 0 0 0.0 nan 0 0 0 0 15498306 G221_M70_statistics_for_primary_unique_reads 14288170 0 0 0 0 0 0 0 14288170 0 100.0 nan 14288170 0 7144085 0 7144085 0 14288170 0 100.0 nan 14288170 0 0 0 0.0 nan 0 0 0 0 14288170 G221_M71_statistics_for_all_accepted_reads 19505444 0 2504992 0 0 0 0 0 19505444 0 100.0 nan 17000452 0 8500226 0 8500226 0 17000452 0 100.0 nan 17000452 0 0 0 0.0 nan 0 0 0 0 19505444 G221_M71_statistics_for_primary_reads 17000452 0 0 0 0 0 0 0 17000452 0 100.0 nan 17000452 0 8500226 0 8500226 0 17000452 0 100.0 nan 17000452 0 0 0 0.0 nan 0 0 0 0 17000452 G221_M71_statistics_for_primary_unique_reads 15709578 0 0 0 0 0 0 0 15709578 0 100.0 nan 15709578 0 7854789 0 7854789 0 15709578 0 100.0 nan 15709578 0 0 0 0.0 nan 0 0 0 0 15709578 G221_M72_statistics_for_all_accepted_reads 14871636 0 1977790 0 0 0 0 0 14871636 0 100.0 nan 12893846 0 6446923 0 6446923 0 12893846 0 100.0 nan 12893846 0 0 0 0.0 nan 0 0 0 0 14871636 G221_M72_statistics_for_primary_reads 12893846 0 0 0 0 0 0 0 12893846 0 100.0 nan 12893846 0 6446923 0 6446923 0 12893846 0 100.0 nan 12893846 0 0 0 0.0 nan 0 0 0 0 12893846 G221_M72_statistics_for_primary_unique_reads 12002234 0 0 0 0 0 0 0 12002234 0 100.0 nan 12002234 0 6001117 0 6001117 0 12002234 0 100.0 nan 12002234 0 0 0 0.0 nan 0 0 0 0 12002234 G221_M73_statistics_for_all_accepted_reads 46177710 0 5910800 0 0 0 0 0 46177710 0 100.0 nan 40266910 0 20133455 0 20133455 0 40266910 0 100.0 nan 40266910 0 0 0 0.0 nan 0 0 0 0 46177710 G221_M73_statistics_for_primary_reads 40266910 0 0 0 0 0 0 0 40266910 0 100.0 nan 40266910 0 20133455 0 20133455 0 40266910 0 100.0 nan 40266910 0 0 0 0.0 nan 0 0 0 0 40266910 G221_M73_statistics_for_primary_unique_reads 37109500 0 0 0 0 0 0 0 37109500 0 100.0 nan 37109500 0 18554750 0 18554750 0 37109500 0 100.0 nan 37109500 0 0 0 0.0 nan 0 0 0 0 37109500 G221_M74_statistics_for_all_accepted_reads 32544056 0 4633520 0 0 0 0 0 32544056 0 100.0 nan 27910536 0 13955268 0 13955268 0 27910536 0 100.0 nan 27910536 0 0 0 0.0 nan 0 0 0 0 32544056 G221_M74_statistics_for_primary_reads 27910536 0 0 0 0 0 0 0 27910536 0 100.0 nan 27910536 0 13955268 0 13955268 0 27910536 0 100.0 nan 27910536 0 0 0 0.0 nan 0 0 0 0 27910536 G221_M74_statistics_for_primary_unique_reads 25413768 0 0 0 0 0 0 0 25413768 0 100.0 nan 25413768 0 12706884 0 12706884 0 25413768 0 100.0 nan 25413768 0 0 0 0.0 nan 0 0 0 0 25413768 G221_M75_statistics_for_all_accepted_reads 43920328 0 4529844 0 0 0 0 0 43920328 0 100.0 nan 39390484 0 19695242 0 19695242 0 39390484 0 100.0 nan 39390484 0 0 0 0.0 nan 0 0 0 0 43920328 G221_M75_statistics_for_primary_reads 39390484 0 0 0 0 0 0 0 39390484 0 100.0 nan 39390484 0 19695242 0 19695242 0 39390484 0 100.0 nan 39390484 0 0 0 0.0 nan 0 0 0 0 39390484 G221_M75_statistics_for_primary_unique_reads 36683482 0 0 0 0 0 0 0 36683482 0 100.0 nan 36683482 0 18341741 0 18341741 0 36683482 0 100.0 nan 36683482 0 0 0 0.0 nan 0 0 0 0 36683482 G221_M76_statistics_for_all_accepted_reads 16993058 0 1723704 0 0 0 0 0 16993058 0 100.0 nan 15269354 0 7634677 0 7634677 0 15269354 0 100.0 nan 15269354 0 0 0 0.0 nan 0 0 0 0 16993058 G221_M76_statistics_for_primary_reads 15269354 0 0 0 0 0 0 0 15269354 0 100.0 nan 15269354 0 7634677 0 7634677 0 15269354 0 100.0 nan 15269354 0 0 0 0.0 nan 0 0 0 0 15269354 G221_M76_statistics_for_primary_unique_reads 14285012 0 0 0 0 0 0 0 14285012 0 100.0 nan 14285012 0 7142506 0 7142506 0 14285012 0 100.0 nan 14285012 0 0 0 0.0 nan 0 0 0 0 14285012 G221_M77_statistics_for_all_accepted_reads 16065728 0 1489920 0 0 0 0 0 16065728 0 100.0 nan 14575808 0 7287904 0 7287904 0 14575808 0 100.0 nan 14575808 0 0 0 0.0 nan 0 0 0 0 16065728 G221_M77_statistics_for_primary_reads 14575808 0 0 0 0 0 0 0 14575808 0 100.0 nan 14575808 0 7287904 0 7287904 0 14575808 0 100.0 nan 14575808 0 0 0 0.0 nan 0 0 0 0 14575808 G221_M77_statistics_for_primary_unique_reads 13657994 0 0 0 0 0 0 0 13657994 0 100.0 nan 13657994 0 6828997 0 6828997 0 13657994 0 100.0 nan 13657994 0 0 0 0.0 nan 0 0 0 0 13657994 G221_M78_statistics_for_all_accepted_reads 17496928 0 1618702 0 0 0 0 0 17496928 0 100.0 nan 15878226 0 7939113 0 7939113 0 15878226 0 100.0 nan 15878226 0 0 0 0.0 nan 0 0 0 0 17496928 G221_M78_statistics_for_primary_reads 15878226 0 0 0 0 0 0 0 15878226 0 100.0 nan 15878226 0 7939113 0 7939113 0 15878226 0 100.0 nan 15878226 0 0 0 0.0 nan 0 0 0 0 15878226 G221_M78_statistics_for_primary_unique_reads 14958628 0 0 0 0 0 0 0 14958628 0 100.0 nan 14958628 0 7479314 0 7479314 0 14958628 0 100.0 nan 14958628 0 0 0 0.0 nan 0 0 0 0 14958628 G221_M79_statistics_for_all_accepted_reads 16905160 0 1688868 0 0 0 0 0 16905160 0 100.0 nan 15216292 0 7608146 0 7608146 0 15216292 0 100.0 nan 15216292 0 0 0 0.0 nan 0 0 0 0 16905160 G221_M79_statistics_for_primary_reads 15216292 0 0 0 0 0 0 0 15216292 0 100.0 nan 15216292 0 7608146 0 7608146 0 15216292 0 100.0 nan 15216292 0 0 0 0.0 nan 0 0 0 0 15216292 G221_M79_statistics_for_primary_unique_reads 14281562 0 0 0 0 0 0 0 14281562 0 100.0 nan 14281562 0 7140781 0 7140781 0 14281562 0 100.0 nan 14281562 0 0 0 0.0 nan 0 0 0 0 14281562 G221_M80_statistics_for_all_accepted_reads 16690002 0 1700842 0 0 0 0 0 16690002 0 100.0 nan 14989160 0 7494580 0 7494580 0 14989160 0 100.0 nan 14989160 0 0 0 0.0 nan 0 0 0 0 16690002 G221_M80_statistics_for_primary_reads 14989160 0 0 0 0 0 0 0 14989160 0 100.0 nan 14989160 0 7494580 0 7494580 0 14989160 0 100.0 nan 14989160 0 0 0 0.0 nan 0 0 0 0 14989160 G221_M80_statistics_for_primary_unique_reads 14070704 0 0 0 0 0 0 0 14070704 0 100.0 nan 14070704 0 7035352 0 7035352 0 14070704 0 100.0 nan 14070704 0 0 0 0.0 nan 0 0 0 0 14070704 statistics_for_primary_unique_reads 16744280 0 0 0 0 0 0 0 16744280 0 100.0 nan 16744280 0 8372140 0 8372140 0 16744280 0 100.0 nan 16744280 0 0 0 0.0 nan 0 0 0 0 16744280