Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G221_M81_statistics_for_all_accepted_reads 13787970 0 1203060 0 0 0 0 0 13787970 0 100.0 nan 12584910 0 6292455 0 6292455 0 12584910 0 100.0 nan 12584910 0 0 0 0.0 nan 0 0 0 0 13787970 G221_M81_statistics_for_primary_reads 12584910 0 0 0 0 0 0 0 12584910 0 100.0 nan 12584910 0 6292455 0 6292455 0 12584910 0 100.0 nan 12584910 0 0 0 0.0 nan 0 0 0 0 12584910 G221_M81_statistics_for_primary_unique_reads 11935614 0 0 0 0 0 0 0 11935614 0 100.0 nan 11935614 0 5967807 0 5967807 0 11935614 0 100.0 nan 11935614 0 0 0 0.0 nan 0 0 0 0 11935614 G221_M82_statistics_for_all_accepted_reads 17883866 0 2123376 0 0 0 0 0 17883866 0 100.0 nan 15760490 0 7880245 0 7880245 0 15760490 0 100.0 nan 15760490 0 0 0 0.0 nan 0 0 0 0 17883866 G221_M82_statistics_for_primary_reads 15760490 0 0 0 0 0 0 0 15760490 0 100.0 nan 15760490 0 7880245 0 7880245 0 15760490 0 100.0 nan 15760490 0 0 0 0.0 nan 0 0 0 0 15760490 G221_M82_statistics_for_primary_unique_reads 14730928 0 0 0 0 0 0 0 14730928 0 100.0 nan 14730928 0 7365464 0 7365464 0 14730928 0 100.0 nan 14730928 0 0 0 0.0 nan 0 0 0 0 14730928 G221_M83_statistics_for_all_accepted_reads 17467896 0 2066464 0 0 0 0 0 17467896 0 100.0 nan 15401432 0 7700716 0 7700716 0 15401432 0 100.0 nan 15401432 0 0 0 0.0 nan 0 0 0 0 17467896 G221_M83_statistics_for_primary_reads 15401432 0 0 0 0 0 0 0 15401432 0 100.0 nan 15401432 0 7700716 0 7700716 0 15401432 0 100.0 nan 15401432 0 0 0 0.0 nan 0 0 0 0 15401432 G221_M83_statistics_for_primary_unique_reads 14351010 0 0 0 0 0 0 0 14351010 0 100.0 nan 14351010 0 7175505 0 7175505 0 14351010 0 100.0 nan 14351010 0 0 0 0.0 nan 0 0 0 0 14351010 G221_M84_statistics_for_all_accepted_reads 22735004 0 3004360 0 0 0 0 0 22735004 0 100.0 nan 19730644 0 9865322 0 9865322 0 19730644 0 100.0 nan 19730644 0 0 0 0.0 nan 0 0 0 0 22735004 G221_M84_statistics_for_primary_reads 19730644 0 0 0 0 0 0 0 19730644 0 100.0 nan 19730644 0 9865322 0 9865322 0 19730644 0 100.0 nan 19730644 0 0 0 0.0 nan 0 0 0 0 19730644 G221_M84_statistics_for_primary_unique_reads 18311120 0 0 0 0 0 0 0 18311120 0 100.0 nan 18311120 0 9155560 0 9155560 0 18311120 0 100.0 nan 18311120 0 0 0 0.0 nan 0 0 0 0 18311120 G221_M85_statistics_for_all_accepted_reads 28134622 0 2896628 0 0 0 0 0 28134622 0 100.0 nan 25237994 0 12618997 0 12618997 0 25237994 0 100.0 nan 25237994 0 0 0 0.0 nan 0 0 0 0 28134622 G221_M85_statistics_for_primary_reads 25237994 0 0 0 0 0 0 0 25237994 0 100.0 nan 25237994 0 12618997 0 12618997 0 25237994 0 100.0 nan 25237994 0 0 0 0.0 nan 0 0 0 0 25237994 G221_M85_statistics_for_primary_unique_reads 23775906 0 0 0 0 0 0 0 23775906 0 100.0 nan 23775906 0 11887953 0 11887953 0 23775906 0 100.0 nan 23775906 0 0 0 0.0 nan 0 0 0 0 23775906 G221_M86_statistics_for_all_accepted_reads 22902086 0 2118574 0 0 0 0 0 22902086 0 100.0 nan 20783512 0 10391756 0 10391756 0 20783512 0 100.0 nan 20783512 0 0 0 0.0 nan 0 0 0 0 22902086 G221_M86_statistics_for_primary_reads 20783512 0 0 0 0 0 0 0 20783512 0 100.0 nan 20783512 0 10391756 0 10391756 0 20783512 0 100.0 nan 20783512 0 0 0 0.0 nan 0 0 0 0 20783512 G221_M86_statistics_for_primary_unique_reads 19618094 0 0 0 0 0 0 0 19618094 0 100.0 nan 19618094 0 9809047 0 9809047 0 19618094 0 100.0 nan 19618094 0 0 0 0.0 nan 0 0 0 0 19618094 G221_M87_statistics_for_all_accepted_reads 27259218 0 3072818 0 0 0 0 0 27259218 0 100.0 nan 24186400 0 12093200 0 12093200 0 24186400 0 100.0 nan 24186400 0 0 0 0.0 nan 0 0 0 0 27259218 G221_M87_statistics_for_primary_reads 24186400 0 0 0 0 0 0 0 24186400 0 100.0 nan 24186400 0 12093200 0 12093200 0 24186400 0 100.0 nan 24186400 0 0 0 0.0 nan 0 0 0 0 24186400 G221_M87_statistics_for_primary_unique_reads 22685168 0 0 0 0 0 0 0 22685168 0 100.0 nan 22685168 0 11342584 0 11342584 0 22685168 0 100.0 nan 22685168 0 0 0 0.0 nan 0 0 0 0 22685168 G221_M88_statistics_for_all_accepted_reads 13690032 0 1495064 0 0 0 0 0 13690032 0 100.0 nan 12194968 0 6097484 0 6097484 0 12194968 0 100.0 nan 12194968 0 0 0 0.0 nan 0 0 0 0 13690032 G221_M88_statistics_for_primary_reads 12194968 0 0 0 0 0 0 0 12194968 0 100.0 nan 12194968 0 6097484 0 6097484 0 12194968 0 100.0 nan 12194968 0 0 0 0.0 nan 0 0 0 0 12194968 G221_M88_statistics_for_primary_unique_reads 11441864 0 0 0 0 0 0 0 11441864 0 100.0 nan 11441864 0 5720932 0 5720932 0 11441864 0 100.0 nan 11441864 0 0 0 0.0 nan 0 0 0 0 11441864 G221_M89_statistics_for_all_accepted_reads 15915938 0 1969544 0 0 0 0 0 15915938 0 100.0 nan 13946394 0 6973197 0 6973197 0 13946394 0 100.0 nan 13946394 0 0 0 0.0 nan 0 0 0 0 15915938 G221_M89_statistics_for_primary_reads 13946394 0 0 0 0 0 0 0 13946394 0 100.0 nan 13946394 0 6973197 0 6973197 0 13946394 0 100.0 nan 13946394 0 0 0 0.0 nan 0 0 0 0 13946394 G221_M89_statistics_for_primary_unique_reads 12945796 0 0 0 0 0 0 0 12945796 0 100.0 nan 12945796 0 6472898 0 6472898 0 12945796 0 100.0 nan 12945796 0 0 0 0.0 nan 0 0 0 0 12945796 G221_M90_statistics_for_all_accepted_reads 24859076 0 2893844 0 0 0 0 0 24859076 0 100.0 nan 21965232 0 10982616 0 10982616 0 21965232 0 100.0 nan 21965232 0 0 0 0.0 nan 0 0 0 0 24859076 G221_M90_statistics_for_primary_reads 21965232 0 0 0 0 0 0 0 21965232 0 100.0 nan 21965232 0 10982616 0 10982616 0 21965232 0 100.0 nan 21965232 0 0 0 0.0 nan 0 0 0 0 21965232 G221_M90_statistics_for_primary_unique_reads 20091354 0 0 0 0 0 0 0 20091354 0 100.0 nan 20091354 0 10045677 0 10045677 0 20091354 0 100.0 nan 20091354 0 0 0 0.0 nan 0 0 0 0 20091354 G221_M91_statistics_for_all_accepted_reads 15869184 0 2003762 0 0 0 0 0 15869184 0 100.0 nan 13865422 0 6932711 0 6932711 0 13865422 0 100.0 nan 13865422 0 0 0 0.0 nan 0 0 0 0 15869184 G221_M91_statistics_for_primary_reads 13865422 0 0 0 0 0 0 0 13865422 0 100.0 nan 13865422 0 6932711 0 6932711 0 13865422 0 100.0 nan 13865422 0 0 0 0.0 nan 0 0 0 0 13865422 G221_M91_statistics_for_primary_unique_reads 12850968 0 0 0 0 0 0 0 12850968 0 100.0 nan 12850968 0 6425484 0 6425484 0 12850968 0 100.0 nan 12850968 0 0 0 0.0 nan 0 0 0 0 12850968 G221_M92_statistics_for_all_accepted_reads 14509804 0 1823502 0 0 0 0 0 14509804 0 100.0 nan 12686302 0 6343151 0 6343151 0 12686302 0 100.0 nan 12686302 0 0 0 0.0 nan 0 0 0 0 14509804 G221_M92_statistics_for_primary_reads 12686302 0 0 0 0 0 0 0 12686302 0 100.0 nan 12686302 0 6343151 0 6343151 0 12686302 0 100.0 nan 12686302 0 0 0 0.0 nan 0 0 0 0 12686302 G221_M92_statistics_for_primary_unique_reads 11787178 0 0 0 0 0 0 0 11787178 0 100.0 nan 11787178 0 5893589 0 5893589 0 11787178 0 100.0 nan 11787178 0 0 0 0.0 nan 0 0 0 0 11787178 G221_M93_statistics_for_all_accepted_reads 15991414 0 1245730 0 0 0 0 0 15991414 0 100.0 nan 14745684 0 7372842 0 7372842 0 14745684 0 100.0 nan 14745684 0 0 0 0.0 nan 0 0 0 0 15991414 G221_M93_statistics_for_primary_reads 14745684 0 0 0 0 0 0 0 14745684 0 100.0 nan 14745684 0 7372842 0 7372842 0 14745684 0 100.0 nan 14745684 0 0 0 0.0 nan 0 0 0 0 14745684 G221_M93_statistics_for_primary_unique_reads 14006884 0 0 0 0 0 0 0 14006884 0 100.0 nan 14006884 0 7003442 0 7003442 0 14006884 0 100.0 nan 14006884 0 0 0 0.0 nan 0 0 0 0 14006884 G221_M94_statistics_for_all_accepted_reads 15218770 0 1500440 0 0 0 0 0 15218770 0 100.0 nan 13718330 0 6859165 0 6859165 0 13718330 0 100.0 nan 13718330 0 0 0 0.0 nan 0 0 0 0 15218770 G221_M94_statistics_for_primary_reads 13718330 0 0 0 0 0 0 0 13718330 0 100.0 nan 13718330 0 6859165 0 6859165 0 13718330 0 100.0 nan 13718330 0 0 0 0.0 nan 0 0 0 0 13718330 G221_M94_statistics_for_primary_unique_reads 12912676 0 0 0 0 0 0 0 12912676 0 100.0 nan 12912676 0 6456338 0 6456338 0 12912676 0 100.0 nan 12912676 0 0 0 0.0 nan 0 0 0 0 12912676 G221_M95_statistics_for_all_accepted_reads 17037386 0 2100246 0 0 0 0 0 17037386 0 100.0 nan 14937140 0 7468570 0 7468570 0 14937140 0 100.0 nan 14937140 0 0 0 0.0 nan 0 0 0 0 17037386 G221_M95_statistics_for_primary_reads 14937140 0 0 0 0 0 0 0 14937140 0 100.0 nan 14937140 0 7468570 0 7468570 0 14937140 0 100.0 nan 14937140 0 0 0 0.0 nan 0 0 0 0 14937140 G221_M95_statistics_for_primary_unique_reads 13884126 0 0 0 0 0 0 0 13884126 0 100.0 nan 13884126 0 6942063 0 6942063 0 13884126 0 100.0 nan 13884126 0 0 0 0.0 nan 0 0 0 0 13884126 G221_M96_statistics_for_all_accepted_reads 3409108 0 388556 0 0 0 0 0 3409108 0 100.0 nan 3020552 0 1510276 0 1510276 0 3020552 0 100.0 nan 3020552 0 0 0 0.0 nan 0 0 0 0 3409108 G221_M96_statistics_for_primary_reads 3020552 0 0 0 0 0 0 0 3020552 0 100.0 nan 3020552 0 1510276 0 1510276 0 3020552 0 100.0 nan 3020552 0 0 0 0.0 nan 0 0 0 0 3020552 G221_M96_statistics_for_primary_unique_reads 2795134 0 0 0 0 0 0 0 2795134 0 100.0 nan 2795134 0 1397567 0 1397567 0 2795134 0 100.0 nan 2795134 0 0 0 0.0 nan 0 0 0 0 2795134