[2024-05-31 17:15:39,128] multiqc [DEBUG ] This is MultiQC v1.12 [2024-05-31 17:15:39,128] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2024-05-31 17:15:39,128] multiqc [DEBUG ] No MultiQC config found: /usr3/graduate/dengel/.multiqc_config.yaml [2024-05-31 17:15:39,128] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-05-31 17:15:39,129] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-05-31 17:15:39,129] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-05-31 17:15:39,129] multiqc [DEBUG ] Command used: /usr/bin/multiqc --no-ansi -c /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/ /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/06_CollectMetrics/ [2024-05-31 17:15:40,168] multiqc [WARNING] MultiQC Version v1.22.2 now available! [2024-05-31 17:15:40,169] multiqc [DEBUG ] Command : /usr/bin/multiqc --no-ansi -c /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/ /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/06_CollectMetrics/ [2024-05-31 17:15:40,169] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/14_final_summary/G224_Shashi_Pipe_multiqc_report [2024-05-31 17:15:40,169] multiqc [DEBUG ] Template : default [2024-05-31 17:15:40,169] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2024-05-31 17:15:40,170] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-05-31 17:15:40,171] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp834e0jie [2024-05-31 17:15:40,319] multiqc [INFO ] Search path : /projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES [2024-05-31 17:15:40,319] multiqc [INFO ] Search path : /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC [2024-05-31 17:15:40,320] multiqc [INFO ] Search path : /projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/06_CollectMetrics [2024-05-31 17:15:40,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:15:40,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:15:40,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M11_hist.pdf [2024-05-31 17:15:40,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:40,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:40,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:40,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:40,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:40,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,617] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,618] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,618] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,618] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,618] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:40,651] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,310] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:42,486] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:44,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M11_featureCounts.out [2024-05-31 17:15:44,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:44,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:44,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M11_metrics [2024-05-31 17:15:44,326] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:15:44,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,466] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,466] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,467] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,467] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:44,501] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,158] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,285] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:46,322] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:47,997] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M13Dup_featureCounts.out [2024-05-31 17:15:48,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M12_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:15:48,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M12_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:15:48,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:48,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:48,262] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:48,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:48,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:48,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M12_hist.pdf [2024-05-31 17:15:48,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,309] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,310] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:48,343] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:49,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,109] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,112] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,116] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,117] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,117] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,117] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,117] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,117] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:50,150] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:51,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M12_featureCounts.out [2024-05-31 17:15:51,940] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:51,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:51,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M12_metrics [2024-05-31 17:15:51,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:15:51,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:15:52,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:52,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:52,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:52,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:52,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:52,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M16_hist.pdf [2024-05-31 17:15:52,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,180] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:52,215] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:53,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:53,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:53,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:53,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,002] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:54,036] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:55,697] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M16_featureCounts.out [2024-05-31 17:15:55,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:55,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:55,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M16_metrics [2024-05-31 17:15:55,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M01_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:15:55,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M01_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:15:55,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M01_hist.pdf [2024-05-31 17:15:55,966] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:55,968] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:55,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:55,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:56,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:56,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,063] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,064] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,064] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,064] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,064] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:56,096] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,863] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,863] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,867] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,867] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,867] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,868] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,868] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,868] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,868] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:57,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:59,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M01_featureCounts.out [2024-05-31 17:15:59,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:59,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:59,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M01_metrics [2024-05-31 17:15:59,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:15:59,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:15:59,828] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M05_hist.pdf [2024-05-31 17:15:59,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:15:59,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:15:59,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:15:59,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:15:59,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:15:59,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,879] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,879] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,879] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,879] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:15:59,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,705] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,711] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,711] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,711] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,712] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:01,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:03,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M05_featureCounts.out [2024-05-31 17:16:03,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:16:03,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:16:03,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M05_metrics [2024-05-31 17:16:03,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:03,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:03,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:03,739] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:03,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:03,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:03,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:03,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M09_hist.pdf [2024-05-31 17:16:03,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,796] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:03,829] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,478] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,607] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:05,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:07,302] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M09_featureCounts.out [2024-05-31 17:16:07,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:07,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:07,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M09_metrics [2024-05-31 17:16:07,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:07,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:07,583] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,586] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,590] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,590] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,591] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,591] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,591] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,591] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,591] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:07,624] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,436] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,437] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:09,471] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:11,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M11Dup_featureCounts.out [2024-05-31 17:16:11,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:11,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:11,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:11,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:11,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:11,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:11,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:11,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M13_hist.pdf [2024-05-31 17:16:11,436] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:11,477] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,284] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:13,318] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:14,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M13_featureCounts.out [2024-05-31 17:16:15,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:15,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:15,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M13_metrics [2024-05-31 17:16:15,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:15,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:15,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:15,341] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,137] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,141] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:17,176] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:18,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M02Dup_featureCounts.out [2024-05-31 17:16:18,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:18,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:19,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M02_hist.pdf [2024-05-31 17:16:19,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:19,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:19,133] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:19,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:19,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:19,228] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,231] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:19,268] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:20,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,049] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,056] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,056] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,056] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,056] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,056] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,057] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,057] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:21,090] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:22,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M02_featureCounts.out [2024-05-31 17:16:22,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:22,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:22,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M02_metrics [2024-05-31 17:16:22,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:22,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:23,040] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M06_hist.pdf [2024-05-31 17:16:23,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:23,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:23,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:23,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:23,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:23,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,106] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:23,140] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,911] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,918] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:24,951] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:26,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M06_featureCounts.out [2024-05-31 17:16:26,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:26,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:26,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M06_metrics [2024-05-31 17:16:26,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:26,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:26,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:26,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:26,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:26,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:26,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:26,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M10_hist.pdf [2024-05-31 17:16:26,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,980] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,984] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,985] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,985] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,985] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:26,985] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:27,018] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:28,848] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:30,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M10_featureCounts.out [2024-05-31 17:16:30,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:30,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:30,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M10_metrics [2024-05-31 17:16:30,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:30,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:30,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_hist.pdf [2024-05-31 17:16:30,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:30,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:30,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:30,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:30,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:30,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,871] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,871] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,871] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,872] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,872] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,872] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,872] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:30,905] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,566] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,701] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,701] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,702] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,702] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,702] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,702] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:32,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:34,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M14_featureCounts.out [2024-05-31 17:16:34,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:34,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:34,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M14_metrics [2024-05-31 17:16:34,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:34,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:34,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M03_hist.pdf [2024-05-31 17:16:34,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:34,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:34,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:34,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:34,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:34,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,778] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,778] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:34,814] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,461] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:36,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:38,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M03_featureCounts.out [2024-05-31 17:16:38,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:38,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:38,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M03_metrics [2024-05-31 17:16:38,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:38,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:38,593] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M07_hist.pdf [2024-05-31 17:16:38,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:38,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:38,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:38,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:38,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:38,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,640] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:38,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,331] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:40,503] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:42,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M07_featureCounts.out [2024-05-31 17:16:42,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:42,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:42,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M07_metrics [2024-05-31 17:16:42,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:42,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:42,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:42,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:42,460] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:42,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:42,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:42,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M15_hist.pdf [2024-05-31 17:16:42,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,539] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,539] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,540] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:42,575] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,370] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:44,404] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:46,071] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M15_featureCounts.out [2024-05-31 17:16:46,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:46,181] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:46,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M15_metrics [2024-05-31 17:16:46,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:46,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:46,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:46,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:46,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:46,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:46,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:46,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M04_hist.pdf [2024-05-31 17:16:46,466] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,471] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,478] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,478] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,479] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,479] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,479] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,479] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,479] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:46,514] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,307] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,307] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,307] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,307] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,308] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:48,343] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:49,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M04_featureCounts.out [2024-05-31 17:16:50,095] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:50,097] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:50,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M04_metrics [2024-05-31 17:16:50,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:50,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:50,301] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M08_hist.pdf [2024-05-31 17:16:50,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:50,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:50,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:50,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:50,349] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:50,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,363] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:50,397] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,207] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:52,240] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:53,909] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M08_featureCounts.out [2024-05-31 17:16:54,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:54,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:54,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M08_metrics [2024-05-31 17:16:54,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz [2024-05-31 17:16:54,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1.fq.gz [2024-05-31 17:16:54,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,253] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,253] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,253] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,253] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:54,288] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:55,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,111] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,117] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:56,152] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:57,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M14Dup_featureCounts.out [2024-05-31 17:16:57,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-05-31 17:16:57,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-05-31 17:16:57,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-05-31 17:16:58,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-05-31 17:16:58,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-05-31 17:16:58,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-05-31 17:16:58,037] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-05-31 17:16:58,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-05-31 17:16:58,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-05-31 17:16:58,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-05-31 17:16:58,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-05-31 17:16:58,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-05-31 17:16:58,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-05-31 17:16:58,089] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-05-31 17:16:58,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-05-31 17:16:58,117] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M09.o7628632 [2024-05-31 17:16:58,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M09.o7628632 [2024-05-31 17:16:58,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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limit: Step_03_G224_Shashi_Pipe_G224_M06.o7628628 [2024-05-31 17:16:58,171] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M06.o7628628 [2024-05-31 17:16:58,179] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M04.o7628625 [2024-05-31 17:16:58,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M04.o7628625 [2024-05-31 17:16:58,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M04.o7628625 [2024-05-31 17:16:58,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M04.o7628625 [2024-05-31 17:16:58,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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Step_03_G224_Shashi_Pipe_G224_M14Dup.o7628641 [2024-05-31 17:16:58,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M14Dup.o7628641 [2024-05-31 17:16:58,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M14Dup.o7628641 [2024-05-31 17:16:58,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M14Dup.o7628641 [2024-05-31 17:16:58,265] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M14Dup.o7628641 [2024-05-31 17:16:58,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M02.o7628623 [2024-05-31 17:16:58,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize 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limit: Step_03_G224_Shashi_Pipe_G224_M05.o7628627 [2024-05-31 17:16:58,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M05.o7628627 [2024-05-31 17:16:58,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11.o7628634 [2024-05-31 17:16:58,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11.o7628634 [2024-05-31 17:16:58,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11.o7628634 [2024-05-31 17:16:58,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11.o7628634 [2024-05-31 17:16:58,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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Step_03_G224_Shashi_Pipe_G224_M11Dup.o7628636 [2024-05-31 17:16:58,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11Dup.o7628636 [2024-05-31 17:16:58,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11Dup.o7628636 [2024-05-31 17:16:58,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11Dup.o7628636 [2024-05-31 17:16:58,438] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M11Dup.o7628636 [2024-05-31 17:16:58,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M13.o7628637 [2024-05-31 17:16:58,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M13.o7628637 [2024-05-31 17:16:58,451] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M13.o7628637 [2024-05-31 17:16:58,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M13.o7628637 [2024-05-31 17:16:58,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M13.o7628637 [2024-05-31 17:16:58,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M14.o7628639 [2024-05-31 17:16:58,477] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M14.o7628639 [2024-05-31 17:16:58,477] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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limit: Step_03_G224_Shashi_Pipe_G224_M03.o7628624 [2024-05-31 17:16:58,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M03.o7628624 [2024-05-31 17:16:58,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M02Dup.o7628621 [2024-05-31 17:16:58,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M02Dup.o7628621 [2024-05-31 17:16:58,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M02Dup.o7628621 [2024-05-31 17:16:58,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G224_Shashi_Pipe_G224_M02Dup.o7628621 [2024-05-31 17:16:58,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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[2024-05-31 17:16:59,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,082] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,087] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize 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multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,190] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,190] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,195] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:16:59,195] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 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17:17:01,465] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:17:01,465] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:17:01,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.html [2024-05-31 17:17:01,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:01,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:01,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:02,182] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:02,183] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:02,183] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:02,183] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.html [2024-05-31 17:17:02,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize 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filesize limit: Step_06_G224_Shashi_Pipe_G224_M16.o7587112 [2024-05-31 17:17:05,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M16.o7587112 [2024-05-31 17:17:05,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M16.o7587112 [2024-05-31 17:17:05,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M16.o7587112 [2024-05-31 17:17:05,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M14.o7587108 [2024-05-31 17:17:05,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M14.o7587108 [2024-05-31 17:17:05,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M14.o7587108 [2024-05-31 17:17:05,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M14.o7587108 [2024-05-31 17:17:05,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M14.o7587108 [2024-05-31 17:17:05,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M06.o7587092 [2024-05-31 17:17:05,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M06.o7587092 [2024-05-31 17:17:05,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M06.o7587092 [2024-05-31 17:17:05,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M06.o7587092 [2024-05-31 17:17:05,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G224_Shashi_Pipe_G224_M06.o7587092 [2024-05-31 17:17:05,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-05-31 17:17:05,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-05-31 17:17:05,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-05-31 17:17:05,684] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-05-31 17:17:05,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-05-31 17:17:05,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:05,709] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:07,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-05-31 17:17:07,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-31 17:17:07,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-31 17:17:07,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-31 17:17:07,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-31 17:17:07,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-05-31 17:17:07,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-31 17:17:07,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-31 17:17:07,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-31 17:17:07,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-31 17:17:07,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-05-31 17:17:07,535] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2024-05-31 17:17:07,537] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2024-05-31 17:17:07,571] multiqc.modules.rseqc.rseqc [INFO ] Found 20 infer_experiment reports [2024-05-31 17:17:07,579] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M11_sorted [2024-05-31 17:17:07,582] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M13Dup_sorted [2024-05-31 17:17:07,584] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M12_sorted [2024-05-31 17:17:07,587] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M16_sorted [2024-05-31 17:17:07,592] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M01_sorted [2024-05-31 17:17:07,597] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M05_sorted [2024-05-31 17:17:07,603] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M09_sorted [2024-05-31 17:17:07,608] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M11Dup_sorted [2024-05-31 17:17:07,613] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M13_sorted [2024-05-31 17:17:07,619] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M02Dup_sorted [2024-05-31 17:17:07,624] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M02_sorted [2024-05-31 17:17:07,629] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M06_sorted [2024-05-31 17:17:07,633] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M10_sorted [2024-05-31 17:17:07,638] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M14_sorted [2024-05-31 17:17:07,642] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M03_sorted [2024-05-31 17:17:07,645] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M07_sorted [2024-05-31 17:17:07,647] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M15_sorted [2024-05-31 17:17:07,649] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M04_sorted [2024-05-31 17:17:07,650] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M08_sorted [2024-05-31 17:17:07,652] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G224_M14Dup_sorted [2024-05-31 17:17:07,652] multiqc.modules.featureCounts.feature_counts [INFO ] Found 20 reports [2024-05-31 17:17:07,966] multiqc.modules.picard.picard [INFO ] Found 16 InsertSizeMetrics reports [2024-05-31 17:17:07,998] multiqc.modules.picard.picard [INFO ] Found 16 RnaSeqMetrics reports [2024-05-31 17:17:08,010] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,014] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,019] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,023] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,027] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,034] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,040] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,044] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,046] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,050] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,052] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,053] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,058] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,059] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,061] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2024-05-31 17:17:08,068] multiqc.modules.samtools.samtools [INFO ] Found 61 flagstat reports [2024-05-31 17:17:08,086] multiqc.modules.star.star [INFO ] Found 20 reports [2024-05-31 17:17:08,094] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,098] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,102] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,106] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,111] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,115] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,119] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,124] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,128] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,133] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,137] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,142] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,147] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,152] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,157] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-05-31 17:17:08,158] multiqc.modules.fastp.fastp [INFO ] Found 12 reports [2024-05-31 17:17:09,782] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip' as already parsed 'G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1' [2024-05-31 17:17:09,782] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip' as already parsed 'G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2' [2024-05-31 17:17:09,782] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip' as already parsed 'G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2' [2024-05-31 17:17:09,782] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip' as already parsed 'G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1' [2024-05-31 17:17:09,782] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip' as already parsed 'G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1' [2024-05-31 17:17:09,782] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip' as already parsed 'G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_2' [2024-05-31 17:17:10,341] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip' as already parsed 'G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1' [2024-05-31 17:17:11,587] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2024-05-31 17:17:12,427] multiqc [INFO ] Compressing plot data [2024-05-31 17:17:14,866] multiqc [INFO ] Report : multiqc_report.html [2024-05-31 17:17:14,942] multiqc [INFO ] Data : multiqc_data [2024-05-31 17:17:14,942] multiqc [DEBUG ] Moving data file from '/scratch/tmp834e0jie/multiqc_data' to '/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/14_final_summary/G224_Shashi_Pipe_multiqc_report/multiqc_data' [2024-05-31 17:17:15,199] multiqc [INFO ] MultiQC complete