Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G224_M01_statistics_for_all_accepted_reads 11959214 0 2609460 0 0 0 0 0 11959214 0 100.0 nan 9349754 0 4674877 0 4674877 0 9349754 0 100.0 nan 9349754 0 0 0 0.0 nan 0 0 0 0 11959214 G224_M01_statistics_for_primary_reads 9349754 0 0 0 0 0 0 0 9349754 0 100.0 nan 9349754 0 4674877 0 4674877 0 9349754 0 100.0 nan 9349754 0 0 0 0.0 nan 0 0 0 0 9349754 G224_M01_statistics_for_primary_unique_reads 8020434 0 0 0 0 0 0 0 8020434 0 100.0 nan 8020434 0 4010217 0 4010217 0 8020434 0 100.0 nan 8020434 0 0 0 0.0 nan 0 0 0 0 8020434 G224_M02Dup_statistics_for_all_accepted_reads 16031782 0 3075884 0 0 0 0 0 16031782 0 100.0 nan 12955898 0 6477949 0 6477949 0 12955898 0 100.0 nan 12955898 0 0 0 0.0 nan 0 0 0 0 16031782 G224_M02Dup_statistics_for_primary_reads 12955898 0 0 0 0 0 0 0 12955898 0 100.0 nan 12955898 0 6477949 0 6477949 0 12955898 0 100.0 nan 12955898 0 0 0 0.0 nan 0 0 0 0 12955898 G224_M02Dup_statistics_for_primary_unique_reads 11329362 0 0 0 0 0 0 0 11329362 0 100.0 nan 11329362 0 5664681 0 5664681 0 11329362 0 100.0 nan 11329362 0 0 0 0.0 nan 0 0 0 0 11329362 G224_M02_statistics_for_all_accepted_reads 16031782 0 3075884 0 0 0 0 0 16031782 0 100.0 nan 12955898 0 6477949 0 6477949 0 12955898 0 100.0 nan 12955898 0 0 0 0.0 nan 0 0 0 0 16031782 G224_M02_statistics_for_primary_reads 12955898 0 0 0 0 0 0 0 12955898 0 100.0 nan 12955898 0 6477949 0 6477949 0 12955898 0 100.0 nan 12955898 0 0 0 0.0 nan 0 0 0 0 12955898 G224_M02_statistics_for_primary_unique_reads 11329362 0 0 0 0 0 0 0 11329362 0 100.0 nan 11329362 0 5664681 0 5664681 0 11329362 0 100.0 nan 11329362 0 0 0 0.0 nan 0 0 0 0 11329362 G224_M03_statistics_for_all_accepted_reads 14640106 0 2585642 0 0 0 0 0 14640106 0 100.0 nan 12054464 0 6027232 0 6027232 0 12054464 0 100.0 nan 12054464 0 0 0 0.0 nan 0 0 0 0 14640106 G224_M03_statistics_for_primary_reads 12054464 0 0 0 0 0 0 0 12054464 0 100.0 nan 12054464 0 6027232 0 6027232 0 12054464 0 100.0 nan 12054464 0 0 0 0.0 nan 0 0 0 0 12054464 G224_M03_statistics_for_primary_unique_reads 10178740 0 0 0 0 0 0 0 10178740 0 100.0 nan 10178740 0 5089370 0 5089370 0 10178740 0 100.0 nan 10178740 0 0 0 0.0 nan 0 0 0 0 10178740 G224_M04_statistics_for_all_accepted_reads 14436634 0 2815442 0 0 0 0 0 14436634 0 100.0 nan 11621192 0 5810596 0 5810596 0 11621192 0 100.0 nan 11621192 0 0 0 0.0 nan 0 0 0 0 14436634 G224_M04_statistics_for_primary_reads 11621192 0 0 0 0 0 0 0 11621192 0 100.0 nan 11621192 0 5810596 0 5810596 0 11621192 0 100.0 nan 11621192 0 0 0 0.0 nan 0 0 0 0 11621192 G224_M04_statistics_for_primary_unique_reads 9825090 0 0 0 0 0 0 0 9825090 0 100.0 nan 9825090 0 4912545 0 4912545 0 9825090 0 100.0 nan 9825090 0 0 0 0.0 nan 0 0 0 0 9825090 G224_M05_statistics_for_all_accepted_reads 12208306 0 1196754 0 0 0 0 0 12208306 0 100.0 nan 11011552 0 5505776 0 5505776 0 11011552 0 100.0 nan 11011552 0 0 0 0.0 nan 0 0 0 0 12208306 G224_M05_statistics_for_primary_reads 11011552 0 0 0 0 0 0 0 11011552 0 100.0 nan 11011552 0 5505776 0 5505776 0 11011552 0 100.0 nan 11011552 0 0 0 0.0 nan 0 0 0 0 11011552 G224_M05_statistics_for_primary_unique_reads 10456048 0 0 0 0 0 0 0 10456048 0 100.0 nan 10456048 0 5228024 0 5228024 0 10456048 0 100.0 nan 10456048 0 0 0 0.0 nan 0 0 0 0 10456048 G224_M06_statistics_for_all_accepted_reads 24784322 0 3584540 0 0 0 0 0 24784322 0 100.0 nan 21199782 0 10599891 0 10599891 0 21199782 0 100.0 nan 21199782 0 0 0 0.0 nan 0 0 0 0 24784322 G224_M06_statistics_for_primary_reads 21199782 0 0 0 0 0 0 0 21199782 0 100.0 nan 21199782 0 10599891 0 10599891 0 21199782 0 100.0 nan 21199782 0 0 0 0.0 nan 0 0 0 0 21199782 G224_M06_statistics_for_primary_unique_reads 19732834 0 0 0 0 0 0 0 19732834 0 100.0 nan 19732834 0 9866417 0 9866417 0 19732834 0 100.0 nan 19732834 0 0 0 0.0 nan 0 0 0 0 19732834 G224_M07_statistics_for_all_accepted_reads 14141824 0 1089924 0 0 0 0 0 14141824 0 100.0 nan 13051900 0 6525950 0 6525950 0 13051900 0 100.0 nan 13051900 0 0 0 0.0 nan 0 0 0 0 14141824 G224_M07_statistics_for_primary_reads 13051900 0 0 0 0 0 0 0 13051900 0 100.0 nan 13051900 0 6525950 0 6525950 0 13051900 0 100.0 nan 13051900 0 0 0 0.0 nan 0 0 0 0 13051900 G224_M07_statistics_for_primary_unique_reads 12503476 0 0 0 0 0 0 0 12503476 0 100.0 nan 12503476 0 6251738 0 6251738 0 12503476 0 100.0 nan 12503476 0 0 0 0.0 nan 0 0 0 0 12503476 G224_M08_statistics_for_all_accepted_reads 20240428 0 1836776 0 0 0 0 0 20240428 0 100.0 nan 18403652 0 9201826 0 9201826 0 18403652 0 100.0 nan 18403652 0 0 0 0.0 nan 0 0 0 0 20240428 G224_M08_statistics_for_primary_reads 18403652 0 0 0 0 0 0 0 18403652 0 100.0 nan 18403652 0 9201826 0 9201826 0 18403652 0 100.0 nan 18403652 0 0 0 0.0 nan 0 0 0 0 18403652 G224_M08_statistics_for_primary_unique_reads 17527886 0 0 0 0 0 0 0 17527886 0 100.0 nan 17527886 0 8763943 0 8763943 0 17527886 0 100.0 nan 17527886 0 0 0 0.0 nan 0 0 0 0 17527886 G224_M09_statistics_for_all_accepted_reads 7626418 0 759220 0 0 0 0 0 7626418 0 100.0 nan 6867198 0 3433599 0 3433599 0 6867198 0 100.0 nan 6867198 0 0 0 0.0 nan 0 0 0 0 7626418 G224_M09_statistics_for_primary_reads 6867198 0 0 0 0 0 0 0 6867198 0 100.0 nan 6867198 0 3433599 0 3433599 0 6867198 0 100.0 nan 6867198 0 0 0 0.0 nan 0 0 0 0 6867198 G224_M09_statistics_for_primary_unique_reads 6438112 0 0 0 0 0 0 0 6438112 0 100.0 nan 6438112 0 3219056 0 3219056 0 6438112 0 100.0 nan 6438112 0 0 0 0.0 nan 0 0 0 0 6438112 G224_M10_statistics_for_all_accepted_reads 9840586 0 832136 0 0 0 0 0 9840586 0 100.0 nan 9008450 0 4504225 0 4504225 0 9008450 0 100.0 nan 9008450 0 0 0 0.0 nan 0 0 0 0 9840586 G224_M10_statistics_for_primary_reads 9008450 0 0 0 0 0 0 0 9008450 0 100.0 nan 9008450 0 4504225 0 4504225 0 9008450 0 100.0 nan 9008450 0 0 0 0.0 nan 0 0 0 0 9008450 G224_M10_statistics_for_primary_unique_reads 8613268 0 0 0 0 0 0 0 8613268 0 100.0 nan 8613268 0 4306634 0 4306634 0 8613268 0 100.0 nan 8613268 0 0 0 0.0 nan 0 0 0 0 8613268 G224_M11Dup_statistics_for_all_accepted_reads 8850080 0 578576 0 0 0 0 0 8850080 0 100.0 nan 8271504 0 4135752 0 4135752 0 8271504 0 100.0 nan 8271504 0 0 0 0.0 nan 0 0 0 0 8850080 G224_M11Dup_statistics_for_primary_reads 8271504 0 0 0 0 0 0 0 8271504 0 100.0 nan 8271504 0 4135752 0 4135752 0 8271504 0 100.0 nan 8271504 0 0 0 0.0 nan 0 0 0 0 8271504 G224_M11Dup_statistics_for_primary_unique_reads 7943468 0 0 0 0 0 0 0 7943468 0 100.0 nan 7943468 0 3971734 0 3971734 0 7943468 0 100.0 nan 7943468 0 0 0 0.0 nan 0 0 0 0 7943468 G224_M11_statistics_for_all_accepted_reads 8850080 0 578576 0 0 0 0 0 8850080 0 100.0 nan 8271504 0 4135752 0 4135752 0 8271504 0 100.0 nan 8271504 0 0 0 0.0 nan 0 0 0 0 8850080 G224_M11_statistics_for_primary_reads 8271504 0 0 0 0 0 0 0 8271504 0 100.0 nan 8271504 0 4135752 0 4135752 0 8271504 0 100.0 nan 8271504 0 0 0 0.0 nan 0 0 0 0 8271504 G224_M11_statistics_for_primary_unique_reads 7943468 0 0 0 0 0 0 0 7943468 0 100.0 nan 7943468 0 3971734 0 3971734 0 7943468 0 100.0 nan 7943468 0 0 0 0.0 nan 0 0 0 0 7943468 G224_M12_statistics_for_all_accepted_reads 8738320 0 648080 0 0 0 0 0 8738320 0 100.0 nan 8090240 0 4045120 0 4045120 0 8090240 0 100.0 nan 8090240 0 0 0 0.0 nan 0 0 0 0 8738320 G224_M12_statistics_for_primary_reads 8090240 0 0 0 0 0 0 0 8090240 0 100.0 nan 8090240 0 4045120 0 4045120 0 8090240 0 100.0 nan 8090240 0 0 0 0.0 nan 0 0 0 0 8090240 G224_M12_statistics_for_primary_unique_reads 7766582 0 0 0 0 0 0 0 7766582 0 100.0 nan 7766582 0 3883291 0 3883291 0 7766582 0 100.0 nan 7766582 0 0 0 0.0 nan 0 0 0 0 7766582 G224_M13Dup_statistics_for_all_accepted_reads 7365830 0 2314756 0 0 0 0 0 7365830 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 7365830 G224_M13Dup_statistics_for_primary_reads 5051074 0 0 0 0 0 0 0 5051074 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 5051074 G224_M13Dup_statistics_for_primary_unique_reads 4038678 0 0 0 0 0 0 0 4038678 0 100.0 nan 0 0 0 0 0 0 0 0 nan nan 0 0 0 0 nan nan 0 0 0 0 4038678 G224_M13_statistics_for_all_accepted_reads 10151090 0 2057036 0 0 0 0 0 10151090 0 100.0 nan 8094054 0 4047027 0 4047027 0 8094054 0 100.0 nan 8094054 0 0 0 0.0 nan 0 0 0 0 10151090 G224_M13_statistics_for_primary_reads 8094054 0 0 0 0 0 0 0 8094054 0 100.0 nan 8094054 0 4047027 0 4047027 0 8094054 0 100.0 nan 8094054 0 0 0 0.0 nan 0 0 0 0 8094054 G224_M13_statistics_for_primary_unique_reads 6975990 0 0 0 0 0 0 0 6975990 0 100.0 nan 6975990 0 3487995 0 3487995 0 6975990 0 100.0 nan 6975990 0 0 0 0.0 nan 0 0 0 0 6975990 G224_M14Dup_statistics_for_all_accepted_reads 12531710 0 2113086 0 0 0 0 0 12531710 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 12531710 G224_M14Dup_statistics_for_primary_reads 10418624 0 0 0 0 0 0 0 10418624 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 10418624 G224_M14Dup_statistics_for_primary_unique_reads 8940364 0 0 0 0 0 0 0 8940364 0 100.0 nan 8940364 0 4470182 0 4470182 0 8940364 0 100.0 nan 8940364 0 0 0 0.0 nan 0 0 0 0 8940364 G224_M14_statistics_for_all_accepted_reads 12531710 0 2113086 0 0 0 0 0 12531710 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 12531710 G224_M14_statistics_for_primary_reads 10418624 0 0 0 0 0 0 0 10418624 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 10418624 G224_M14_statistics_for_primary_unique_reads 8940364 0 0 0 0 0 0 0 8940364 0 100.0 nan 8940364 0 4470182 0 4470182 0 8940364 0 100.0 nan 8940364 0 0 0 0.0 nan 0 0 0 0 8940364 G224_M15_statistics_for_all_accepted_reads 12531710 0 2113086 0 0 0 0 0 12531710 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 12531710 G224_M15_statistics_for_primary_reads 10418624 0 0 0 0 0 0 0 10418624 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 10418624 G224_M15_statistics_for_primary_unique_reads 8940364 0 0 0 0 0 0 0 8940364 0 100.0 nan 8940364 0 4470182 0 4470182 0 8940364 0 100.0 nan 8940364 0 0 0 0.0 nan 0 0 0 0 8940364 G224_M16_statistics_for_all_accepted_reads 12531710 0 2113086 0 0 0 0 0 12531710 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 12531710 G224_M16_statistics_for_primary_reads 10418624 0 0 0 0 0 0 0 10418624 0 100.0 nan 10418624 0 5209312 0 5209312 0 10418624 0 100.0 nan 10418624 0 0 0 0.0 nan 0 0 0 0 10418624 G224_M16_statistics_for_primary_unique_reads 8940364 0 0 0 0 0 0 0 8940364 0 100.0 nan 8940364 0 4470182 0 4470182 0 8940364 0 100.0 nan 8940364 0 0 0 0.0 nan 0 0 0 0 8940364 statistics_for_primary_unique_reads 8940364 0 0 0 0 0 0 0 8940364 0 100.0 nan 8940364 0 4470182 0 4470182 0 8940364 0 100.0 nan 8940364 0 0 0 0.0 nan 0 0 0 0 8940364