Module	Section	Sample Name	Source
RSeQC	infer_experiment	G224_M11_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/Read_Strandness/G224_M11_Read_Strandness.txt
RSeQC	infer_experiment	G224_M13Dup_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13Dup/Read_Strandness/G224_M13Dup_Read_Strandness.txt
RSeQC	infer_experiment	G224_M12_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/Read_Strandness/G224_M12_Read_Strandness.txt
RSeQC	infer_experiment	G224_M16_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/Read_Strandness/G224_M16_Read_Strandness.txt
RSeQC	infer_experiment	G224_M01_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/Read_Strandness/G224_M01_Read_Strandness.txt
RSeQC	infer_experiment	G224_M05_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/Read_Strandness/G224_M05_Read_Strandness.txt
RSeQC	infer_experiment	G224_M09_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/Read_Strandness/G224_M09_Read_Strandness.txt
RSeQC	infer_experiment	G224_M11Dup_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11Dup/Read_Strandness/G224_M11Dup_Read_Strandness.txt
RSeQC	infer_experiment	G224_M13_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/Read_Strandness/G224_M13_Read_Strandness.txt
RSeQC	infer_experiment	G224_M02Dup_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02Dup/Read_Strandness/G224_M02Dup_Read_Strandness.txt
RSeQC	infer_experiment	G224_M02_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/Read_Strandness/G224_M02_Read_Strandness.txt
RSeQC	infer_experiment	G224_M06_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/Read_Strandness/G224_M06_Read_Strandness.txt
RSeQC	infer_experiment	G224_M10_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/Read_Strandness/G224_M10_Read_Strandness.txt
RSeQC	infer_experiment	G224_M14_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/Read_Strandness/G224_M14_Read_Strandness.txt
RSeQC	infer_experiment	G224_M03_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/Read_Strandness/G224_M03_Read_Strandness.txt
RSeQC	infer_experiment	G224_M07_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/Read_Strandness/G224_M07_Read_Strandness.txt
RSeQC	infer_experiment	G224_M15_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/Read_Strandness/G224_M15_Read_Strandness.txt
RSeQC	infer_experiment	G224_M04_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/Read_Strandness/G224_M04_Read_Strandness.txt
RSeQC	infer_experiment	G224_M08_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/Read_Strandness/G224_M08_Read_Strandness.txt
RSeQC	infer_experiment	G224_M14Dup_Read_Strandness	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/Read_Strandness/G224_M14Dup_Read_Strandness.txt
featureCounts	all_sections	G224_M11_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M11_featureCounts.out.summary
featureCounts	all_sections	G224_M13Dup_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13Dup/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M13Dup_featureCounts.out.summary
featureCounts	all_sections	G224_M12_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M12_featureCounts.out.summary
featureCounts	all_sections	G224_M16_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M16_featureCounts.out.summary
featureCounts	all_sections	G224_M01_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M01_featureCounts.out.summary
featureCounts	all_sections	G224_M05_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M05_featureCounts.out.summary
featureCounts	all_sections	G224_M09_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M09_featureCounts.out.summary
featureCounts	all_sections	G224_M11Dup_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11Dup/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M11Dup_featureCounts.out.summary
featureCounts	all_sections	G224_M13_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M13_featureCounts.out.summary
featureCounts	all_sections	G224_M02Dup_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02Dup/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M02Dup_featureCounts.out.summary
featureCounts	all_sections	G224_M02_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M02_featureCounts.out.summary
featureCounts	all_sections	G224_M06_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M06_featureCounts.out.summary
featureCounts	all_sections	G224_M10_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M10_featureCounts.out.summary
featureCounts	all_sections	G224_M14_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M14_featureCounts.out.summary
featureCounts	all_sections	G224_M03_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M03_featureCounts.out.summary
featureCounts	all_sections	G224_M07_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M07_featureCounts.out.summary
featureCounts	all_sections	G224_M15_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M15_featureCounts.out.summary
featureCounts	all_sections	G224_M04_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M04_featureCounts.out.summary
featureCounts	all_sections	G224_M08_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M08_featureCounts.out.summary
featureCounts	all_sections	G224_M14Dup_sorted	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G224_M14Dup_featureCounts.out.summary
Picard	InsertSizeMetrics	G224_M11_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/CollectInsertSizeMetrics/G224_M11_metrics
Picard	InsertSizeMetrics	G224_M12_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/CollectInsertSizeMetrics/G224_M12_metrics
Picard	InsertSizeMetrics	G224_M16_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/CollectInsertSizeMetrics/G224_M16_metrics
Picard	InsertSizeMetrics	G224_M01_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/CollectInsertSizeMetrics/G224_M01_metrics
Picard	InsertSizeMetrics	G224_M05_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/CollectInsertSizeMetrics/G224_M05_metrics
Picard	InsertSizeMetrics	G224_M09_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/CollectInsertSizeMetrics/G224_M09_metrics
Picard	InsertSizeMetrics	G224_M13_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/CollectInsertSizeMetrics/G224_M13_metrics
Picard	InsertSizeMetrics	G224_M02_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/CollectInsertSizeMetrics/G224_M02_metrics
Picard	InsertSizeMetrics	G224_M06_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/CollectInsertSizeMetrics/G224_M06_metrics
Picard	InsertSizeMetrics	G224_M10_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/CollectInsertSizeMetrics/G224_M10_metrics
Picard	InsertSizeMetrics	G224_M14_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/CollectInsertSizeMetrics/G224_M14_metrics
Picard	InsertSizeMetrics	G224_M03_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/CollectInsertSizeMetrics/G224_M03_metrics
Picard	InsertSizeMetrics	G224_M07_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/CollectInsertSizeMetrics/G224_M07_metrics
Picard	InsertSizeMetrics	G224_M15_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/CollectInsertSizeMetrics/G224_M15_metrics
Picard	InsertSizeMetrics	G224_M04_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/CollectInsertSizeMetrics/G224_M04_metrics
Picard	InsertSizeMetrics	G224_M08_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/CollectInsertSizeMetrics/G224_M08_metrics
Picard	RnaSeqMetrics	G224_M11_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/CollectRnaSeqMetrics/G224_M11_metrics
Picard	RnaSeqMetrics	G224_M12_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/CollectRnaSeqMetrics/G224_M12_metrics
Picard	RnaSeqMetrics	G224_M16_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/CollectRnaSeqMetrics/G224_M16_metrics
Picard	RnaSeqMetrics	G224_M01_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/CollectRnaSeqMetrics/G224_M01_metrics
Picard	RnaSeqMetrics	G224_M05_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/CollectRnaSeqMetrics/G224_M05_metrics
Picard	RnaSeqMetrics	G224_M09_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/CollectRnaSeqMetrics/G224_M09_metrics
Picard	RnaSeqMetrics	G224_M13_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/CollectRnaSeqMetrics/G224_M13_metrics
Picard	RnaSeqMetrics	G224_M02_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/CollectRnaSeqMetrics/G224_M02_metrics
Picard	RnaSeqMetrics	G224_M06_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/CollectRnaSeqMetrics/G224_M06_metrics
Picard	RnaSeqMetrics	G224_M10_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/CollectRnaSeqMetrics/G224_M10_metrics
Picard	RnaSeqMetrics	G224_M14_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/CollectRnaSeqMetrics/G224_M14_metrics
Picard	RnaSeqMetrics	G224_M03_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/CollectRnaSeqMetrics/G224_M03_metrics
Picard	RnaSeqMetrics	G224_M07_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/CollectRnaSeqMetrics/G224_M07_metrics
Picard	RnaSeqMetrics	G224_M15_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/CollectRnaSeqMetrics/G224_M15_metrics
Picard	RnaSeqMetrics	G224_M04_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/CollectRnaSeqMetrics/G224_M04_metrics
Picard	RnaSeqMetrics	G224_M08_primary_unique	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/CollectRnaSeqMetrics/G224_M08_metrics
Samtools	flagstat	statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/aligner/statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M11_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/aligner/G224_M11_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M11_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/aligner/G224_M11_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M11_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/aligner/G224_M11_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M13Dup_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13Dup/aligner/G224_M13Dup_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M13Dup_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13Dup/aligner/G224_M13Dup_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M13Dup_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13Dup/aligner/G224_M13Dup_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M12_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/aligner/G224_M12_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M12_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/aligner/G224_M12_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M12_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/aligner/G224_M12_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M16_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/aligner/G224_M16_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M16_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/aligner/G224_M16_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M16_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/aligner/G224_M16_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M01_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/aligner/G224_M01_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M01_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/aligner/G224_M01_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M01_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/aligner/G224_M01_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M05_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/aligner/G224_M05_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M05_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/aligner/G224_M05_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M05_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/aligner/G224_M05_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M09_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/aligner/G224_M09_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M09_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/aligner/G224_M09_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M09_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/aligner/G224_M09_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M11Dup_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11Dup/aligner/G224_M11Dup_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M11Dup_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11Dup/aligner/G224_M11Dup_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M11Dup_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11Dup/aligner/G224_M11Dup_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M13_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/aligner/G224_M13_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M13_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/aligner/G224_M13_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M13_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/aligner/G224_M13_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M02Dup_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02Dup/aligner/G224_M02Dup_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M02Dup_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02Dup/aligner/G224_M02Dup_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M02Dup_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02Dup/aligner/G224_M02Dup_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M02_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/aligner/G224_M02_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M02_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/aligner/G224_M02_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M02_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/aligner/G224_M02_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M06_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/aligner/G224_M06_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M06_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/aligner/G224_M06_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M06_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/aligner/G224_M06_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M10_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/aligner/G224_M10_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M10_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/aligner/G224_M10_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M10_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/aligner/G224_M10_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M14_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/aligner/G224_M14_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M14_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/aligner/G224_M14_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M14_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/aligner/G224_M14_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M03_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/aligner/G224_M03_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M03_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/aligner/G224_M03_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M03_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/aligner/G224_M03_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M07_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/aligner/G224_M07_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M07_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/aligner/G224_M07_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M07_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/aligner/G224_M07_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M15_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/aligner/G224_M15_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M15_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/aligner/G224_M15_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M15_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/aligner/G224_M15_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M04_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/aligner/G224_M04_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M04_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/aligner/G224_M04_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M04_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/aligner/G224_M04_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M08_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/aligner/G224_M08_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G224_M08_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/aligner/G224_M08_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M08_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/aligner/G224_M08_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M14Dup_statistics_for_primary_unique_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/aligner/G224_M14Dup_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G224_M14Dup_statistics_for_primary_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/aligner/G224_M14Dup_statistics_for_primary_reads.txt
Samtools	flagstat	G224_M14Dup_statistics_for_all_accepted_reads	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/aligner/G224_M14Dup_statistics_for_all_accepted_reads.txt
STAR	SummaryLog	G224_M11_G224_M11	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11/aligner/G224_M11_G224_M11_Log.final.out
STAR	SummaryLog	G224_M13Dup_G224_M13Dup	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13Dup/aligner/G224_M13Dup_G224_M13Dup_Log.final.out
STAR	SummaryLog	G224_M12_G224_M12	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M12/aligner/G224_M12_G224_M12_Log.final.out
STAR	SummaryLog	G224_M16_G224_M16	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M16/aligner/G224_M16_G224_M16_Log.final.out
STAR	SummaryLog	G224_M01_G224_M01	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M01/aligner/G224_M01_G224_M01_Log.final.out
STAR	SummaryLog	G224_M05_G224_M05	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M05/aligner/G224_M05_G224_M05_Log.final.out
STAR	SummaryLog	G224_M09_G224_M09	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M09/aligner/G224_M09_G224_M09_Log.final.out
STAR	SummaryLog	G224_M11Dup_G224_M11Dup	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M11Dup/aligner/G224_M11Dup_G224_M11Dup_Log.final.out
STAR	SummaryLog	G224_M13_G224_M13	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M13/aligner/G224_M13_G224_M13_Log.final.out
STAR	SummaryLog	G224_M02Dup_G224_M02Dup	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02Dup/aligner/G224_M02Dup_G224_M02Dup_Log.final.out
STAR	SummaryLog	G224_M02_G224_M02	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M02/aligner/G224_M02_G224_M02_Log.final.out
STAR	SummaryLog	G224_M06_G224_M06	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M06/aligner/G224_M06_G224_M06_Log.final.out
STAR	SummaryLog	G224_M10_G224_M10	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M10/aligner/G224_M10_G224_M10_Log.final.out
STAR	SummaryLog	G224_M14_G224_M14	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14/aligner/G224_M14_G224_M14_Log.final.out
STAR	SummaryLog	G224_M03_G224_M03	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M03/aligner/G224_M03_G224_M03_Log.final.out
STAR	SummaryLog	G224_M07_G224_M07	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M07/aligner/G224_M07_G224_M07_Log.final.out
STAR	SummaryLog	G224_M15_G224_M15	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M15/aligner/G224_M15_G224_M15_Log.final.out
STAR	SummaryLog	G224_M04_G224_M04	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M04/aligner/G224_M04_G224_M04_Log.final.out
STAR	SummaryLog	G224_M08_G224_M08	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M08/aligner/G224_M08_G224_M08_Log.final.out
STAR	SummaryLog	G224_M14Dup_G224_M14Dup	/projectnb/wax-dk/david/G224_Shashi_Pipe/SAMPLES/G224_M14Dup/aligner/G224_M14Dup_G224_M14Dup_Log.final.out
fastp	all_sections	G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M04_FASTP/fastp.json
fastp	all_sections	G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M11Dup_FASTP/fastp.json
fastp	all_sections	G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M03_FASTP/fastp.json
fastp	all_sections	G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M02Dup_FASTP/fastp.json
fastp	all_sections	G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M14Dup_FASTP/fastp.json
fastp	all_sections	G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M06_FASTP/fastp.json
fastp	all_sections	G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M09_FASTP/fastp.json
fastp	all_sections	G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M08_FASTP/fastp.json
fastp	all_sections	G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M13_FASTP/fastp.json
fastp	all_sections	G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M10_FASTP/fastp.json
fastp	all_sections	G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M05_FASTP/fastp.json
fastp	all_sections	G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M07_FASTP/fastp.json
FastQC	all_sections	G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M05_FASTQC/G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M05_FASTQC/G224_M05_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M07_FASTQC/G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M07_FASTQC/G224_M07_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M11Dup_FASTQC/G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M11Dup_FASTQC/G224_M11_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M02_FASTQC/G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M02_FASTQC/G224_M02_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M14_FASTQC/G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M14_FASTQC/G224_M14_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M13Dup_FASTQC/G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M04_FASTQC/G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M04_FASTQC/G224_M04_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M03_FASTQC/G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M03_FASTQC/G224_M03_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M13_FASTQC/G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M08_FASTQC/G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M08_FASTQC/G224_M08_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M06_FASTQC/G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M06_FASTQC/G224_M06_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M10_FASTQC/G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M10_FASTQC/G224_M10_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip
FastQC	all_sections	G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_1	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M09_FASTQC/G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_1_fastqc.zip
FastQC	all_sections	G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_2	/projectnb/wax-dk/david/G224_Shashi_Pipe/Scripts/03_FASTQC/Job_Summary/G224_M09_FASTQC/G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_2_fastqc.zip