[2024-11-19 10:04:13,071] multiqc [DEBUG ] This is MultiQC v1.11 [2024-11-19 10:04:13,071] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-11-19 10:04:13,072] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-11-19 10:04:13,072] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-11-19 10:04:13,073] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G239/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-11-19 10:04:13,073] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-11-19 10:04:13,073] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2024-11-19 10:04:13,073] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G239/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G239/SAMPLES /projectnb/wax-dk/max/G239/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G239/Scripts/06_CollectMetrics/ [2024-11-19 10:04:13,523] multiqc [WARNING] MultiQC Version v1.25.1 now available! [2024-11-19 10:04:13,523] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G239/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G239/SAMPLES /projectnb/wax-dk/max/G239/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G239/Scripts/06_CollectMetrics/ [2024-11-19 10:04:13,524] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G239/Scripts/99_final_summary/G239_multiqc_report [2024-11-19 10:04:13,524] multiqc [DEBUG ] Template : default [2024-11-19 10:04:13,524] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-11-19 10:04:13,525] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-11-19 10:04:13,525] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpb54jq22c [2024-11-19 10:04:13,602] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G239/SAMPLES [2024-11-19 10:04:13,603] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G239/Scripts/03_FASTQC [2024-11-19 10:04:13,603] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G239/Scripts/06_CollectMetrics [2024-11-19 10:04:13,764] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /projectnb/wax-dk/max/G239/SAMPLES/G239_M01/tmp/multiqc_data [2024-11-19 10:04:14,025] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:14,025] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:14,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,084] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,085] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:14,085] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-19 10:04:15,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_primary_unique.bam.bai [2024-11-19 10:04:15,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_primary_unique.bam [2024-11-19 10:04:15,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-19 10:04:15,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-19 10:04:15,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-19 10:04:15,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-19 10:04:15,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-19 10:04:15,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_hist.pdf [2024-11-19 10:04:15,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:15,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:15,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:15,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:15,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:16,062] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,064] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,067] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,084] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,974] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,977] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:16,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-19 10:04:17,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:17,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:17,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-19 10:04:17,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:17,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:17,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_primary_unique.bam [2024-11-19 10:04:17,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_primary_unique.bam.bai [2024-11-19 10:04:17,964] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:17,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-19 10:04:19,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-19 10:04:19,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-19 10:04:19,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-19 10:04:19,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-19 10:04:19,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-19 10:04:19,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:19,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:19,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:19,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:19,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:19,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_hist.pdf [2024-11-19 10:04:19,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,869] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:19,886] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,777] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,777] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:20,807] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-19 10:04:21,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:21,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:21,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-19 10:04:21,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:21,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:21,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,754] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,757] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,757] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,757] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,757] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,757] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,758] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:21,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-19 10:04:23,831] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_primary_unique.bam.bai [2024-11-19 10:04:23,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_primary_unique.bam [2024-11-19 10:04:23,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-19 10:04:23,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-19 10:04:23,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-19 10:04:23,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-19 10:04:23,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-19 10:04:23,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:23,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:23,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:23,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:23,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:23,986] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_hist.pdf [2024-11-19 10:04:23,990] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,991] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,994] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,994] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,994] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,994] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:23,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:24,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:25,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-19 10:04:25,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:25,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:25,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-19 10:04:25,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:25,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:25,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_primary_unique.bam.bai [2024-11-19 10:04:25,975] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,978] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,978] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,982] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:25,982] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-19 10:04:27,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_primary_unique.bam [2024-11-19 10:04:27,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-19 10:04:27,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-19 10:04:27,754] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-19 10:04:27,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-19 10:04:27,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-19 10:04:27,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:27,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:27,772] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:27,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:27,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:27,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_hist.pdf [2024-11-19 10:04:27,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,845] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,845] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,845] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,845] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,846] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,846] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:27,862] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,761] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:28,778] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-19 10:04:29,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:29,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:29,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-19 10:04:29,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:29,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:29,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_primary_unique.bam.bai [2024-11-19 10:04:29,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,763] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:29,764] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-19 10:04:31,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_primary_unique.bam [2024-11-19 10:04:31,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-19 10:04:31,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-19 10:04:31,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-19 10:04:31,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-19 10:04:31,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-19 10:04:31,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:31,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:31,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:31,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:31,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:31,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_hist.pdf [2024-11-19 10:04:31,923] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,925] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,928] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,928] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,928] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,929] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,929] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:31,946] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:32,859] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-19 10:04:33,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:33,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:33,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-19 10:04:33,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:33,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:33,809] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,812] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,812] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:33,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-19 10:04:35,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_primary_unique.bam [2024-11-19 10:04:35,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_primary_unique.bam.bai [2024-11-19 10:04:35,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-19 10:04:35,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-19 10:04:35,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-19 10:04:35,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-19 10:04:35,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-19 10:04:35,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_hist.pdf [2024-11-19 10:04:35,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:35,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:35,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:35,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:35,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:35,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:35,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,738] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,741] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,742] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:36,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-19 10:04:37,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:37,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:37,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-19 10:04:37,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:37,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:37,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_primary_unique.bam [2024-11-19 10:04:37,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:37,712] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-19 10:04:39,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_primary_unique.bam.bai [2024-11-19 10:04:39,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-19 10:04:39,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-19 10:04:39,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-19 10:04:39,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-19 10:04:39,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-19 10:04:39,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_hist.pdf [2024-11-19 10:04:39,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:39,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:39,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:39,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:39,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:39,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:39,986] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,885] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:40,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-19 10:04:41,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:41,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:41,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-19 10:04:41,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:41,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:41,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_primary_unique.bam [2024-11-19 10:04:41,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,858] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,858] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:41,862] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-19 10:04:43,832] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_primary_unique.bam.bai [2024-11-19 10:04:43,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-19 10:04:43,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-19 10:04:43,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-19 10:04:43,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-19 10:04:43,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-19 10:04:43,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_hist.pdf [2024-11-19 10:04:43,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:43,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:43,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:43,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:43,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:43,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,946] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:43,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,864] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:44,881] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-19 10:04:45,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:45,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:45,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-19 10:04:45,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:45,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:45,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_primary_unique.bam [2024-11-19 10:04:45,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_primary_unique.bam.bai [2024-11-19 10:04:45,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:45,865] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-19 10:04:47,855] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-19 10:04:47,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-19 10:04:47,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-19 10:04:47,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-19 10:04:47,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-19 10:04:47,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_hist.pdf [2024-11-19 10:04:47,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:47,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:47,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:47,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:47,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:47,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,935] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:47,955] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,846] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:48,863] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-19 10:04:49,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:49,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:49,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-19 10:04:49,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:49,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:49,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_primary_unique.bam [2024-11-19 10:04:49,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_primary_unique.bam.bai [2024-11-19 10:04:49,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:49,878] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-19 10:04:51,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-19 10:04:51,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-19 10:04:51,674] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-19 10:04:51,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-19 10:04:51,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-19 10:04:51,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:51,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:51,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:51,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:51,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:51,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_hist.pdf [2024-11-19 10:04:51,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:51,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,683] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,686] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:52,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-19 10:04:53,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:53,590] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:53,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-19 10:04:53,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:53,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:53,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_primary_unique.bam [2024-11-19 10:04:53,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_primary_unique.bam.bai [2024-11-19 10:04:53,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:53,715] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-19 10:04:55,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-19 10:04:55,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-19 10:04:55,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-19 10:04:55,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-19 10:04:55,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-19 10:04:55,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:55,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:55,649] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:55,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:55,652] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:55,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_hist.pdf [2024-11-19 10:04:55,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,703] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:55,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,614] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,617] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:56,635] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-19 10:04:57,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:57,532] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:57,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-19 10:04:57,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:04:57,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:04:57,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,663] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,663] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:57,664] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-19 10:04:59,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_primary_unique.bam [2024-11-19 10:04:59,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_primary_unique.bam.bai [2024-11-19 10:04:59,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-19 10:04:59,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-19 10:04:59,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-19 10:04:59,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-19 10:04:59,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-19 10:04:59,576] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_hist.pdf [2024-11-19 10:04:59,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:04:59,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:04:59,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:04:59,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:04:59,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:04:59,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,655] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,655] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,658] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:04:59,675] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,568] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,571] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,572] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:00,588] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-19 10:05:01,468] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:05:01,470] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:05:01,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-19 10:05:01,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:01,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:01,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:01,555] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-19 10:05:03,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_primary_unique.bam.bai [2024-11-19 10:05:03,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_primary_unique.bam [2024-11-19 10:05:03,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-19 10:05:03,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-19 10:05:03,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-19 10:05:03,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-19 10:05:03,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-19 10:05:03,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:03,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:03,274] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:03,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:03,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:03,337] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_hist.pdf [2024-11-19 10:05:03,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,343] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,348] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:03,369] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,262] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,266] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:04,282] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-19 10:05:05,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:05,179] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:05,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-19 10:05:05,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:05,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:05,217] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,222] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,222] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:05,223] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-19 10:05:07,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_primary_unique.bam [2024-11-19 10:05:07,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_primary_unique.bam.bai [2024-11-19 10:05:07,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-19 10:05:07,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-19 10:05:07,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-19 10:05:07,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-19 10:05:07,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-19 10:05:07,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:07,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:07,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:07,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:07,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:07,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_hist.pdf [2024-11-19 10:05:07,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,246] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,250] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:07,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,161] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,164] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:08,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-19 10:05:09,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:09,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:09,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-19 10:05:09,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:09,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:09,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:09,144] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-19 10:05:11,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_primary_unique.bam [2024-11-19 10:05:11,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_primary_unique.bam.bai [2024-11-19 10:05:11,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-19 10:05:11,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-19 10:05:11,095] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-19 10:05:11,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-19 10:05:11,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-19 10:05:11,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_hist.pdf [2024-11-19 10:05:11,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:11,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:11,119] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:11,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:11,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:11,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,197] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,197] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,200] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:11,217] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,112] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:12,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-19 10:05:13,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:13,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:13,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-19 10:05:13,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:13,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:13,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,079] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-19 10:05:13,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,230] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,243] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-19 10:05:13,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_primary_unique.bam.bai [2024-11-19 10:05:13,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,327] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,331] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:13,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-19 10:05:15,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_primary_unique.bam [2024-11-19 10:05:15,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-19 10:05:15,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-19 10:05:15,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-19 10:05:15,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-19 10:05:15,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-19 10:05:15,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_hist.pdf [2024-11-19 10:05:15,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:15,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:15,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:15,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:15,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:15,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,514] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,518] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:15,535] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,430] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,430] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,433] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,434] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:16,450] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-19 10:05:17,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:17,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:17,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-19 10:05:17,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:17,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:17,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:17,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-19 10:05:19,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_primary_unique.bam [2024-11-19 10:05:19,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_primary_unique.bam.bai [2024-11-19 10:05:19,221] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-19 10:05:19,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-19 10:05:19,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-19 10:05:19,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-19 10:05:19,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-19 10:05:19,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_hist.pdf [2024-11-19 10:05:19,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:19,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:19,243] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:19,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:19,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:19,316] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,318] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,318] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,321] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:19,338] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,241] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,241] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,241] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,242] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,242] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,242] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,242] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:20,266] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-19 10:05:21,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:21,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:21,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-19 10:05:21,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:21,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:21,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_primary_unique.bam [2024-11-19 10:05:21,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,231] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:21,235] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-19 10:05:23,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_primary_unique.bam.bai [2024-11-19 10:05:23,204] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-19 10:05:23,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-19 10:05:23,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-19 10:05:23,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-19 10:05:23,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-19 10:05:23,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_hist.pdf [2024-11-19 10:05:23,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:23,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:23,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:23,237] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:23,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:23,326] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:23,350] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:24,276] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-19 10:05:25,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:25,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:25,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-19 10:05:25,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:25,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:25,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_primary_unique.bam [2024-11-19 10:05:25,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,308] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,309] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,309] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:25,309] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-19 10:05:27,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_primary_unique.bam.bai [2024-11-19 10:05:27,094] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-19 10:05:27,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-19 10:05:27,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-19 10:05:27,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-19 10:05:27,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-19 10:05:27,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:27,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:27,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:27,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:27,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:27,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_hist.pdf [2024-11-19 10:05:27,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,205] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:27,222] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,124] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,126] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,126] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,131] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:28,151] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-19 10:05:29,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:29,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:29,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-19 10:05:29,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:29,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:29,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_primary_unique.bam.bai [2024-11-19 10:05:29,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_primary_unique.bam [2024-11-19 10:05:29,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:29,234] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-19 10:05:31,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-19 10:05:31,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-19 10:05:31,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-19 10:05:31,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-19 10:05:31,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-19 10:05:31,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:31,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:31,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:31,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:31,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:31,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_hist.pdf [2024-11-19 10:05:31,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,443] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,443] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,444] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,444] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,444] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,444] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,444] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:31,467] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,437] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:32,456] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-19 10:05:33,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:33,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:33,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-19 10:05:33,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:33,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:33,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_primary_unique.bam.bai [2024-11-19 10:05:33,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_primary_unique.bam [2024-11-19 10:05:33,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:33,558] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-19 10:05:35,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-19 10:05:35,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-19 10:05:35,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-19 10:05:35,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-19 10:05:35,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-19 10:05:35,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:35,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:35,399] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:35,399] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:35,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:35,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_hist.pdf [2024-11-19 10:05:35,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:35,510] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:36,509] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-19 10:05:37,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:37,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:37,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-19 10:05:37,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:37,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:37,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_primary_unique.bam [2024-11-19 10:05:37,506] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_primary_unique.bam.bai [2024-11-19 10:05:37,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:37,559] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-19 10:05:39,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-19 10:05:39,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-19 10:05:39,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-19 10:05:39,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-19 10:05:39,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-19 10:05:39,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:39,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:39,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:39,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:39,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:39,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_hist.pdf [2024-11-19 10:05:39,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,459] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,462] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:39,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,382] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:40,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-19 10:05:41,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:41,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:41,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-19 10:05:41,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:41,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:41,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_primary_unique.bam.bai [2024-11-19 10:05:41,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_primary_unique.bam [2024-11-19 10:05:41,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:41,421] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-19 10:05:43,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-19 10:05:43,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-19 10:05:43,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-19 10:05:43,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-19 10:05:43,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-19 10:05:43,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_hist.pdf [2024-11-19 10:05:43,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:43,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:43,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:43,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:43,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:43,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:43,568] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,478] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:44,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-19 10:05:45,384] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:45,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:45,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-19 10:05:45,433] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:45,436] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:45,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:45,460] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-19 10:05:47,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_primary_unique.bam.bai [2024-11-19 10:05:47,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_primary_unique.bam [2024-11-19 10:05:47,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-19 10:05:47,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-19 10:05:47,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-19 10:05:47,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-19 10:05:47,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-19 10:05:47,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:47,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:47,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:47,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:47,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:47,596] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_hist.pdf [2024-11-19 10:05:47,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,606] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,606] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,606] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,606] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,606] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:47,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:48,548] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-19 10:05:49,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:49,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:49,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-19 10:05:49,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:49,500] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:49,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:49,547] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-19 10:05:51,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_primary_unique.bam.bai [2024-11-19 10:05:51,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_primary_unique.bam [2024-11-19 10:05:51,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-19 10:05:51,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-19 10:05:51,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-19 10:05:51,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-19 10:05:51,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-19 10:05:51,816] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_hist.pdf [2024-11-19 10:05:51,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:51,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:51,822] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:51,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:51,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:51,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,898] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:51,915] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,837] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:52,858] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-19 10:05:53,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:53,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:53,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-19 10:05:53,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:53,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:53,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_primary_unique.bam [2024-11-19 10:05:53,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:53,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-19 10:05:55,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_primary_unique.bam.bai [2024-11-19 10:05:55,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-19 10:05:55,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-19 10:05:55,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-19 10:05:55,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-19 10:05:55,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-19 10:05:55,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:55,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:55,501] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:55,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:55,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:55,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_hist.pdf [2024-11-19 10:05:55,563] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,565] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,568] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,568] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,569] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,569] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:55,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,518] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,518] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,519] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,519] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,519] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,519] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,519] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:56,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-19 10:05:57,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:57,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:57,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-19 10:05:57,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:05:57,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:05:57,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_primary_unique.bam.bai [2024-11-19 10:05:57,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_primary_unique.bam [2024-11-19 10:05:57,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:57,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-19 10:05:59,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-19 10:05:59,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-19 10:05:59,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-19 10:05:59,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-19 10:05:59,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-19 10:05:59,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:05:59,652] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:05:59,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:05:59,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:05:59,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:05:59,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_hist.pdf [2024-11-19 10:05:59,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,708] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,711] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:05:59,728] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,624] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,627] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:00,644] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-19 10:06:01,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:06:01,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:06:01,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-19 10:06:01,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:01,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:01,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:01,665] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-19 10:06:03,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_primary_unique.bam.bai [2024-11-19 10:06:03,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_primary_unique.bam [2024-11-19 10:06:03,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-19 10:06:03,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-19 10:06:03,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-19 10:06:03,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-19 10:06:03,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-19 10:06:03,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_hist.pdf [2024-11-19 10:06:03,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:03,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:03,791] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:03,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:03,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:03,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,855] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,861] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,862] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,862] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,862] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,862] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:03,886] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,884] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:04,910] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-19 10:06:05,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:05,807] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:05,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-19 10:06:05,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:05,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:05,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_primary_unique.bam [2024-11-19 10:06:05,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:05,917] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-19 10:06:07,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_primary_unique.bam.bai [2024-11-19 10:06:07,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-19 10:06:07,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-19 10:06:07,731] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-19 10:06:07,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-19 10:06:07,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-19 10:06:07,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:07,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:07,751] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:07,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:07,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:07,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_hist.pdf [2024-11-19 10:06:07,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,799] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,803] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:07,820] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,732] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,732] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,736] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:08,753] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-19 10:06:09,652] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:09,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:09,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-19 10:06:09,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:09,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:09,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_primary_unique.bam.bai [2024-11-19 10:06:09,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,751] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:09,754] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-19 10:06:11,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_primary_unique.bam [2024-11-19 10:06:11,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-19 10:06:11,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-19 10:06:11,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-19 10:06:11,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-19 10:06:11,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-19 10:06:11,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:11,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:11,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:11,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:11,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:11,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_hist.pdf [2024-11-19 10:06:11,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,858] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,858] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,862] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,862] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,863] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,863] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,863] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,863] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,863] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:11,888] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:12,827] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-19 10:06:13,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:13,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:13,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-19 10:06:13,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:13,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:13,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_primary_unique.bam.bai [2024-11-19 10:06:13,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,846] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,852] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:13,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-19 10:06:15,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_primary_unique.bam [2024-11-19 10:06:15,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-19 10:06:15,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-19 10:06:15,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-19 10:06:15,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-19 10:06:15,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-19 10:06:15,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_hist.pdf [2024-11-19 10:06:15,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:15,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:15,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:15,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:15,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:15,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,936] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:15,965] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:16,905] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-19 10:06:17,826] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:17,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:17,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-19 10:06:17,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:17,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:17,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,930] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:17,933] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-19 10:06:20,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_primary_unique.bam.bai [2024-11-19 10:06:20,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_primary_unique.bam [2024-11-19 10:06:20,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-19 10:06:20,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-19 10:06:20,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-19 10:06:20,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-19 10:06:20,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-19 10:06:20,132] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:20,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:20,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:20,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:20,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:20,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_hist.pdf [2024-11-19 10:06:20,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:20,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,157] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:21,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-19 10:06:22,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:22,058] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:22,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-19 10:06:22,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:22,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:22,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_primary_unique.bam.bai [2024-11-19 10:06:22,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_primary_unique.bam [2024-11-19 10:06:22,160] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,162] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:22,165] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-19 10:06:23,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-19 10:06:23,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-19 10:06:23,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-19 10:06:23,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-19 10:06:23,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-19 10:06:23,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_hist.pdf [2024-11-19 10:06:23,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:23,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:23,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:23,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:23,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:24,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,029] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,046] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:24,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-19 10:06:25,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:25,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:25,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-19 10:06:25,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:25,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:25,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_primary_unique.bam.bai [2024-11-19 10:06:25,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_primary_unique.bam [2024-11-19 10:06:26,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,015] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,015] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,015] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,015] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,016] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:26,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-19 10:06:27,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-19 10:06:27,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-19 10:06:27,928] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-19 10:06:27,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-19 10:06:27,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-19 10:06:27,947] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_hist.pdf [2024-11-19 10:06:27,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:27,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:27,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:27,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:27,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:28,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,028] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,034] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,057] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:28,991] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-19 10:06:29,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:29,889] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:29,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-19 10:06:29,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:29,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:29,947] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_primary_unique.bam [2024-11-19 10:06:30,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,022] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,022] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:30,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-19 10:06:31,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_primary_unique.bam.bai [2024-11-19 10:06:31,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-19 10:06:31,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-19 10:06:31,820] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-19 10:06:31,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-19 10:06:31,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-19 10:06:31,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_hist.pdf [2024-11-19 10:06:31,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:31,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:31,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:31,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:31,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:31,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,915] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:31,932] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:32,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-19 10:06:33,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:33,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:33,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-19 10:06:33,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:33,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:33,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_primary_unique.bam [2024-11-19 10:06:33,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,966] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:33,997] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-19 10:06:35,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_primary_unique.bam.bai [2024-11-19 10:06:35,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-19 10:06:35,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-19 10:06:35,595] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-19 10:06:35,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-19 10:06:35,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-19 10:06:35,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_hist.pdf [2024-11-19 10:06:35,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:35,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:35,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:35,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:35,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:35,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,709] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,712] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:35,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,653] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,658] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:36,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-19 10:06:37,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:37,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:37,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-19 10:06:37,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:37,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:37,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_primary_unique.bam [2024-11-19 10:06:37,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_primary_unique.bam.bai [2024-11-19 10:06:37,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,705] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:37,708] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-19 10:06:39,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-19 10:06:39,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-19 10:06:39,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-19 10:06:39,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-19 10:06:39,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-19 10:06:39,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_hist.pdf [2024-11-19 10:06:39,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:39,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:39,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:39,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:39,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:39,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,630] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:39,647] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,580] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,580] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,580] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:40,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-19 10:06:41,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:41,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:41,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-19 10:06:41,536] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:41,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:41,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:41,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-19 10:06:43,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_primary_unique.bam [2024-11-19 10:06:43,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_primary_unique.bam.bai [2024-11-19 10:06:43,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-19 10:06:43,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-19 10:06:43,394] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-19 10:06:43,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-19 10:06:43,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-19 10:06:43,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:43,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:43,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:43,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:43,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:43,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_hist.pdf [2024-11-19 10:06:43,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,477] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,477] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,480] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:43,497] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,408] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,409] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:44,426] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-19 10:06:45,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:45,337] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:45,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-19 10:06:45,395] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:45,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:45,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_primary_unique.bam.bai [2024-11-19 10:06:45,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,480] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,480] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:45,481] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-19 10:06:47,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_primary_unique.bam [2024-11-19 10:06:47,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-19 10:06:47,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-19 10:06:47,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-19 10:06:47,451] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-19 10:06:47,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-19 10:06:47,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_hist.pdf [2024-11-19 10:06:47,488] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:47,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:47,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:47,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:47,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:47,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:47,575] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,498] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:48,515] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-19 10:06:49,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:49,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:49,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-19 10:06:49,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-19 10:06:49,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-19 10:06:49,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,485] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,488] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:49,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-19 10:06:51,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_primary_unique.bam [2024-11-19 10:06:51,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_primary_unique.bam.bai [2024-11-19 10:06:51,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-19 10:06:51,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-19 10:06:51,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-19 10:06:51,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-19 10:06:51,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-19 10:06:51,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:51,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:51,686] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:51,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:51,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:51,739] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_hist.pdf [2024-11-19 10:06:51,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:51,780] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,718] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:52,738] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-19 10:06:53,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:53,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:53,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-19 10:06:53,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-11-19 10:06:53,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-11-19 10:06:53,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-11-19 10:06:53,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-11-19 10:06:53,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-11-19 10:06:53,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-11-19 10:06:53,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-11-19 10:06:53,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-11-19 10:06:53,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-19 10:06:53,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-19 10:06:53,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-19 10:06:53,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-19 10:06:53,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-19 10:06:53,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-11-19 10:06:53,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-11-19 10:06:53,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M27.o1103429 [2024-11-19 10:06:53,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G239_G239_M27.o1103429 [2024-11-19 10:06:53,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G239_G239_M27.o1103429 [2024-11-19 10:06:53,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M27.o1103429 [2024-11-19 10:06:53,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M27.o1103429 [2024-11-19 10:06:53,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-11-19 10:06:53,875] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-11-19 10:06:53,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-11-19 10:06:53,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-11-19 10:06:53,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-11-19 10:06:53,903] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-11-19 10:06:53,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-11-19 10:06:53,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-11-19 10:06:53,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-11-19 10:06:53,917] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-11-19 10:06:53,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-11-19 10:06:54,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-19 10:06:54,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-19 10:06:54,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M07.o1125190 [2024-11-19 10:07:09,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M07.o1125190 [2024-11-19 10:07:09,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M07.o1125190 [2024-11-19 10:07:09,939] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M16.o1125199 [2024-11-19 10:07:09,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M16.o1125199 [2024-11-19 10:07:09,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M16.o1125199 [2024-11-19 10:07:09,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M16.o1125199 [2024-11-19 10:07:09,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M16.o1125199 [2024-11-19 10:07:09,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M37.o1125221 [2024-11-19 10:07:09,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M37.o1125221 [2024-11-19 10:07:09,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M37.o1125221 [2024-11-19 10:07:09,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M37.o1125221 [2024-11-19 10:07:09,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M37.o1125221 [2024-11-19 10:07:09,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M18.o1125201 [2024-11-19 10:07:09,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M18.o1125201 [2024-11-19 10:07:09,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M18.o1125201 [2024-11-19 10:07:09,987] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M18.o1125201 [2024-11-19 10:07:09,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M18.o1125201 [2024-11-19 10:07:10,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M34.o1125218 [2024-11-19 10:07:10,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M34.o1125218 [2024-11-19 10:07:10,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M34.o1125218 [2024-11-19 10:07:10,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M34.o1125218 [2024-11-19 10:07:10,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M34.o1125218 [2024-11-19 10:07:10,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M01.o1125181 [2024-11-19 10:07:10,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M01.o1125181 [2024-11-19 10:07:10,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M01.o1125181 [2024-11-19 10:07:10,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M01.o1125181 [2024-11-19 10:07:10,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M01.o1125181 [2024-11-19 10:07:10,053] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M13.o1125196 [2024-11-19 10:07:10,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M13.o1125196 [2024-11-19 10:07:10,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M13.o1125196 [2024-11-19 10:07:10,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M13.o1125196 [2024-11-19 10:07:10,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M13.o1125196 [2024-11-19 10:07:10,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M03.o1125183 [2024-11-19 10:07:10,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M03.o1125183 [2024-11-19 10:07:10,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M03.o1125183 [2024-11-19 10:07:10,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M03.o1125183 [2024-11-19 10:07:10,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M03.o1125183 [2024-11-19 10:07:10,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M40.o1125224 [2024-11-19 10:07:10,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M40.o1125224 [2024-11-19 10:07:10,106] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M40.o1125224 [2024-11-19 10:07:10,106] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M40.o1125224 [2024-11-19 10:07:10,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M40.o1125224 [2024-11-19 10:07:10,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M35.o1125219 [2024-11-19 10:07:10,127] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M35.o1125219 [2024-11-19 10:07:10,128] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M35.o1125219 [2024-11-19 10:07:10,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M35.o1125219 [2024-11-19 10:07:10,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M35.o1125219 [2024-11-19 10:07:10,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M33.o1125217 [2024-11-19 10:07:10,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M33.o1125217 [2024-11-19 10:07:10,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M33.o1125217 [2024-11-19 10:07:10,156] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M33.o1125217 [2024-11-19 10:07:10,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M33.o1125217 [2024-11-19 10:07:10,187] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-19 10:07:10,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-19 10:07:10,189] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-19 10:07:10,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-19 10:07:10,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-19 10:07:10,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-19 10:07:10,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-19 10:07:10,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-19 10:07:10,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-19 10:07:10,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-19 10:07:10,228] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-19 10:07:10,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-19 10:07:10,230] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-19 10:07:10,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-19 10:07:10,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-19 10:07:10,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-19 10:07:10,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-19 10:07:10,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-19 10:07:10,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-19 10:07:10,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-19 10:07:10,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-19 10:07:10,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-19 10:07:10,268] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-19 10:07:10,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-19 10:07:10,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-19 10:07:10,285] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-19 10:07:10,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-19 10:07:10,287] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-19 10:07:10,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-19 10:07:10,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-19 10:07:10,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-19 10:07:10,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-19 10:07:10,317] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-19 10:07:10,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-19 10:07:10,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-19 10:07:10,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-19 10:07:10,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-19 10:07:10,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-19 10:07:10,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-19 10:07:10,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-19 10:07:10,358] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-19 10:07:10,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-19 10:07:10,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-19 10:07:10,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-19 10:07:10,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-19 10:07:10,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-19 10:07:10,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-19 10:07:10,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-19 10:07:10,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-19 10:07:10,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-19 10:07:10,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-19 10:07:10,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-19 10:07:10,424] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-19 10:07:10,424] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-19 10:07:10,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-19 10:07:10,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-19 10:07:10,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-19 10:07:10,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-19 10:07:10,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-19 10:07:10,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-19 10:07:10,465] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-19 10:07:10,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-19 10:07:10,467] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-19 10:07:10,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-19 10:07:10,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-19 10:07:10,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-19 10:07:10,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-19 10:07:10,489] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-19 10:07:10,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-19 10:07:10,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-19 10:07:10,508] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-19 10:07:10,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-19 10:07:10,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-19 10:07:10,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-19 10:07:10,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-19 10:07:10,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-19 10:07:10,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-19 10:07:10,539] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-19 10:07:10,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-19 10:07:10,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-19 10:07:10,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-19 10:07:10,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-19 10:07:10,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-19 10:07:10,571] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-19 10:07:10,571] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-19 10:07:10,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-19 10:07:10,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-19 10:07:10,590] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-19 10:07:10,590] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-19 10:07:10,590] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-19 10:07:10,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-19 10:07:10,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-19 10:07:10,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-19 10:07:10,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-19 10:07:10,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-19 10:07:10,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-19 10:07:10,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-19 10:07:10,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-19 10:07:10,641] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-19 10:07:10,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-19 10:07:10,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-19 10:07:10,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-19 10:07:10,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-19 10:07:10,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-19 10:07:10,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-19 10:07:10,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-19 10:07:10,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-19 10:07:10,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-19 10:07:10,688] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-19 10:07:10,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-19 10:07:10,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-19 10:07:10,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-19 10:07:10,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-19 10:07:10,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-19 10:07:10,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-19 10:07:10,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-19 10:07:10,735] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-19 10:07:10,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-19 10:07:10,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-19 10:07:10,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-19 10:07:10,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-19 10:07:10,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-19 10:07:10,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-19 10:07:10,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-19 10:07:10,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-19 10:07:10,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-19 10:07:10,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-19 10:07:10,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-19 10:07:10,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-19 10:07:10,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-19 10:07:10,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-19 10:07:10,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-19 10:07:10,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-19 10:07:10,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-19 10:07:10,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-19 10:07:10,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-19 10:07:10,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-19 10:07:10,834] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-19 10:07:10,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-19 10:07:10,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-19 10:07:10,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-19 10:07:10,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-19 10:07:10,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-11-19 10:07:10,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,883] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,886] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,887] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:10,887] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-11-19 10:07:11,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-19 10:07:11,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-19 10:07:11,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-19 10:07:11,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-19 10:07:11,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-19 10:07:11,735] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-19 10:07:11,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-19 10:07:11,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-19 10:07:11,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-19 10:07:11,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-19 10:07:12,158] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-11-19 10:07:12,159] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-11-19 10:07:12,161] multiqc [DEBUG ] No samples found: custom_content [2024-11-19 10:07:12,165] multiqc [DEBUG ] No samples found: ccs [2024-11-19 10:07:12,170] multiqc [DEBUG ] No samples found: ngsderive [2024-11-19 10:07:12,174] multiqc [DEBUG ] No samples found: purple [2024-11-19 10:07:12,178] multiqc [DEBUG ] No samples found: conpair [2024-11-19 10:07:12,183] multiqc [DEBUG ] No samples found: lima [2024-11-19 10:07:12,188] multiqc [DEBUG ] No samples found: peddy [2024-11-19 10:07:12,196] multiqc [DEBUG ] No samples found: somalier [2024-11-19 10:07:12,201] multiqc [DEBUG ] No samples found: methylQA [2024-11-19 10:07:12,209] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-11-19 10:07:12,209] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-11-19 10:07:12,209] multiqc [DEBUG ] No samples found: mosdepth [2024-11-19 10:07:12,214] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-11-19 10:07:12,217] multiqc [DEBUG ] No samples found: qualimap [2024-11-19 10:07:12,221] multiqc [DEBUG ] No samples found: preseq [2024-11-19 10:07:12,226] multiqc [DEBUG ] No samples found: quast [2024-11-19 10:07:12,230] multiqc [DEBUG ] No samples found: qorts [2024-11-19 10:07:12,234] multiqc [DEBUG ] No samples found: rna_seqc [2024-11-19 10:07:12,239] multiqc [DEBUG ] No samples found: rockhopper [2024-11-19 10:07:12,243] multiqc [DEBUG ] No samples found: rsem [2024-11-19 10:07:12,308] multiqc.modules.rseqc.rseqc [INFO ] Found 40 infer_experiment reports [2024-11-19 10:07:12,317] multiqc [DEBUG ] No samples found: busco [2024-11-19 10:07:12,321] multiqc [DEBUG ] No samples found: bustools [2024-11-19 10:07:12,325] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-11-19 10:07:12,329] multiqc [DEBUG ] No samples found: gffcompare [2024-11-19 10:07:12,334] multiqc [DEBUG ] No samples found: disambiguate [2024-11-19 10:07:12,338] multiqc [DEBUG ] No samples found: supernova [2024-11-19 10:07:12,349] multiqc [DEBUG ] No samples found: deeptools [2024-11-19 10:07:12,353] multiqc [DEBUG ] No samples found: sargasso [2024-11-19 10:07:12,357] multiqc [DEBUG ] No samples found: verifybamid [2024-11-19 10:07:12,361] multiqc [DEBUG ] No samples found: mirtrace [2024-11-19 10:07:12,365] multiqc [DEBUG ] No samples found: happy [2024-11-19 10:07:12,369] multiqc [DEBUG ] No samples found: mirtop [2024-11-19 10:07:12,374] multiqc [DEBUG ] No samples found: sambamba [2024-11-19 10:07:12,380] multiqc [DEBUG ] No samples found: homer [2024-11-19 10:07:12,384] multiqc [DEBUG ] No samples found: hops [2024-11-19 10:07:12,388] multiqc [DEBUG ] No samples found: macs2 [2024-11-19 10:07:12,393] multiqc [DEBUG ] No samples found: theta2 [2024-11-19 10:07:12,401] multiqc [DEBUG ] No samples found: snpeff [2024-11-19 10:07:12,410] multiqc [DEBUG ] No samples found: gatk [2024-11-19 10:07:12,415] multiqc [DEBUG ] No samples found: htseq [2024-11-19 10:07:12,421] multiqc [DEBUG ] No samples found: bcftools [2024-11-19 10:07:12,427] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M37_sorted [2024-11-19 10:07:12,429] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M39_sorted [2024-11-19 10:07:12,431] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M28_sorted [2024-11-19 10:07:12,433] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M17_sorted [2024-11-19 10:07:12,435] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M34_sorted [2024-11-19 10:07:12,438] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M19_sorted [2024-11-19 10:07:12,440] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M36_sorted [2024-11-19 10:07:12,442] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M06_sorted [2024-11-19 10:07:12,444] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M23_sorted [2024-11-19 10:07:12,447] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M40_sorted [2024-11-19 10:07:12,449] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M08_sorted [2024-11-19 10:07:12,452] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M25_sorted [2024-11-19 10:07:12,454] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M12_sorted [2024-11-19 10:07:12,457] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M14_sorted [2024-11-19 10:07:12,459] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M31_sorted [2024-11-19 10:07:12,462] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M01_sorted [2024-11-19 10:07:12,464] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M03_sorted [2024-11-19 10:07:12,467] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M20_sorted [2024-11-19 10:07:12,470] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M05_sorted [2024-11-19 10:07:12,473] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M11_sorted [2024-11-19 10:07:12,476] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M38_sorted [2024-11-19 10:07:12,479] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M27_sorted [2024-11-19 10:07:12,481] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M29_sorted [2024-11-19 10:07:12,484] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M16_sorted [2024-11-19 10:07:12,487] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M33_sorted [2024-11-19 10:07:12,489] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M18_sorted [2024-11-19 10:07:12,492] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M35_sorted [2024-11-19 10:07:12,495] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M22_sorted [2024-11-19 10:07:12,497] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M07_sorted [2024-11-19 10:07:12,500] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M24_sorted [2024-11-19 10:07:12,501] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M09_sorted [2024-11-19 10:07:12,503] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M26_sorted [2024-11-19 10:07:12,504] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M13_sorted [2024-11-19 10:07:12,505] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M30_sorted [2024-11-19 10:07:12,507] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M15_sorted [2024-11-19 10:07:12,508] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M32_sorted [2024-11-19 10:07:12,509] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M02_sorted [2024-11-19 10:07:12,510] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M04_sorted [2024-11-19 10:07:12,511] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M21_sorted [2024-11-19 10:07:12,512] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M10_sorted [2024-11-19 10:07:12,512] multiqc.modules.featureCounts.feature_counts [INFO ] Found 40 reports [2024-11-19 10:07:12,525] multiqc [DEBUG ] No samples found: fgbio [2024-11-19 10:07:12,536] multiqc [DEBUG ] No samples found: dragen [2024-11-19 10:07:12,541] multiqc [DEBUG ] No samples found: dedup [2024-11-19 10:07:12,546] multiqc [DEBUG ] No samples found: damageprofiler [2024-11-19 10:07:12,568] multiqc [DEBUG ] No samples found: biobambam2 [2024-11-19 10:07:12,573] multiqc [DEBUG ] No samples found: jcvi [2024-11-19 10:07:12,578] multiqc [DEBUG ] No samples found: mtnucratio [2024-11-19 10:07:14,304] multiqc.modules.picard.picard [INFO ] Found 40 InsertSizeMetrics reports [2024-11-19 10:07:14,342] multiqc.modules.picard.picard [INFO ] Found 40 MarkDuplicates reports [2024-11-19 10:07:14,416] multiqc.modules.picard.picard [INFO ] Found 40 RnaSeqMetrics reports [2024-11-19 10:07:14,421] multiqc [DEBUG ] No samples found: vep [2024-11-19 10:07:14,428] multiqc [DEBUG ] No samples found: sentieon [2024-11-19 10:07:14,432] multiqc [DEBUG ] No samples found: prokka [2024-11-19 10:07:14,437] multiqc [DEBUG ] No samples found: qc3C [2024-11-19 10:07:14,441] multiqc [DEBUG ] No samples found: nanostat [2024-11-19 10:07:14,446] multiqc [DEBUG ] No samples found: samblaster [2024-11-19 10:07:14,546] multiqc.modules.samtools.samtools [INFO ] Found 120 flagstat reports [2024-11-19 10:07:14,551] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-11-19 10:07:14,555] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-11-19 10:07:14,560] multiqc [DEBUG ] No samples found: bamtools [2024-11-19 10:07:14,564] multiqc [DEBUG ] No samples found: jellyfish [2024-11-19 10:07:14,572] multiqc [DEBUG ] No samples found: vcftools [2024-11-19 10:07:14,576] multiqc [DEBUG ] No samples found: longranger [2024-11-19 10:07:14,581] multiqc [DEBUG ] No samples found: stacks [2024-11-19 10:07:14,586] multiqc [DEBUG ] No samples found: varscan2 [2024-11-19 10:07:14,590] multiqc [DEBUG ] No samples found: snippy [2024-11-19 10:07:14,602] multiqc [DEBUG ] No samples found: bbmap [2024-11-19 10:07:14,667] multiqc [DEBUG ] No samples found: bismark [2024-11-19 10:07:14,672] multiqc [DEBUG ] No samples found: biscuit [2024-11-19 10:07:14,676] multiqc [DEBUG ] No samples found: hicexplorer [2024-11-19 10:07:14,681] multiqc [DEBUG ] No samples found: hicup [2024-11-19 10:07:14,685] multiqc [DEBUG ] No samples found: hicpro [2024-11-19 10:07:14,689] multiqc [DEBUG ] No samples found: salmon [2024-11-19 10:07:14,693] multiqc [DEBUG ] No samples found: kallisto [2024-11-19 10:07:14,699] multiqc [DEBUG ] No samples found: slamdunk [2024-11-19 10:07:17,557] multiqc.modules.star.star [INFO ] Found 40 reports and 40 gene count files [2024-11-19 10:07:17,565] multiqc [DEBUG ] No samples found: hisat2 [2024-11-19 10:07:17,569] multiqc [DEBUG ] No samples found: tophat [2024-11-19 10:07:17,574] multiqc [DEBUG ] No samples found: bowtie2 [2024-11-19 10:07:17,582] multiqc [DEBUG ] No samples found: bowtie1 [2024-11-19 10:07:17,589] multiqc [DEBUG ] No samples found: snpsplit [2024-11-19 10:07:17,594] multiqc [DEBUG ] No samples found: odgi [2024-11-19 10:07:17,598] multiqc [DEBUG ] No samples found: pangolin [2024-11-19 10:07:17,602] multiqc [DEBUG ] No samples found: kat [2024-11-19 10:07:17,606] multiqc [DEBUG ] No samples found: leehom [2024-11-19 10:07:17,611] multiqc [DEBUG ] No samples found: adapterRemoval [2024-11-19 10:07:17,615] multiqc [DEBUG ] No samples found: clipandmerge [2024-11-19 10:07:17,619] multiqc [DEBUG ] No samples found: cutadapt [2024-11-19 10:07:17,625] multiqc [DEBUG ] No samples found: flexbar [2024-11-19 10:07:17,630] multiqc [DEBUG ] No samples found: kaiju [2024-11-19 10:07:17,635] multiqc [DEBUG ] No samples found: kraken [2024-11-19 10:07:17,639] multiqc [DEBUG ] No samples found: malt [2024-11-19 10:07:17,643] multiqc [DEBUG ] No samples found: trimmomatic [2024-11-19 10:07:17,647] multiqc [DEBUG ] No samples found: sickle [2024-11-19 10:07:17,652] multiqc [DEBUG ] No samples found: skewer [2024-11-19 10:07:17,656] multiqc [DEBUG ] No samples found: sortmerna [2024-11-19 10:07:17,660] multiqc [DEBUG ] No samples found: biobloomtools [2024-11-19 10:07:17,666] multiqc [DEBUG ] No samples found: fastq_screen [2024-11-19 10:07:17,671] multiqc [DEBUG ] No samples found: afterqc [2024-11-19 10:07:17,678] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,681] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,684] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,687] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,690] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,693] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,695] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,698] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,702] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,704] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,707] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,710] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,713] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,716] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,719] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,722] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,725] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,728] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,731] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,733] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,736] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,739] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,745] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,748] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,751] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,753] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,756] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,759] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,762] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,765] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,768] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,771] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,774] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,777] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,780] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,783] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,786] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,789] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,792] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,795] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,798] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-19 10:07:17,798] multiqc.modules.fastp.fastp [INFO ] Found 40 reports [2024-11-19 10:07:18,966] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-19 10:07:20,765] multiqc.modules.fastqc.fastqc [INFO ] Found 80 reports [2024-11-19 10:07:20,768] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2024-11-19 10:07:21,958] multiqc [DEBUG ] No samples found: pychopper [2024-11-19 10:07:21,963] multiqc [DEBUG ] No samples found: pycoqc [2024-11-19 10:07:21,968] multiqc [DEBUG ] No samples found: minionqc [2024-11-19 10:07:21,972] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-11-19 10:07:21,976] multiqc [DEBUG ] No samples found: clusterflow [2024-11-19 10:07:21,981] multiqc [DEBUG ] No samples found: bcl2fastq [2024-11-19 10:07:21,985] multiqc [DEBUG ] No samples found: bclconvert [2024-11-19 10:07:21,989] multiqc [DEBUG ] No samples found: interop [2024-11-19 10:07:21,993] multiqc [DEBUG ] No samples found: ivar [2024-11-19 10:07:21,998] multiqc [DEBUG ] No samples found: flash [2024-11-19 10:07:22,002] multiqc [DEBUG ] No samples found: seqyclean [2024-11-19 10:07:22,006] multiqc [DEBUG ] No samples found: optitype [2024-11-19 10:07:22,209] multiqc [INFO ] Compressing plot data [2024-11-19 10:07:27,078] multiqc [INFO ] Report : multiqc_report.html [2024-11-19 10:07:27,079] multiqc [INFO ] Data : multiqc_data [2024-11-19 10:07:27,079] multiqc [DEBUG ] Moving data file from '/scratch/tmpb54jq22c/multiqc_data' to '/projectnb/wax-dk/max/G239/Scripts/99_final_summary/G239_multiqc_report/multiqc_data' [2024-11-19 10:07:27,257] multiqc [INFO ] MultiQC complete