[2024-08-23 10:22:08,559] multiqc [DEBUG ] This is MultiQC v1.11 [2024-08-23 10:22:08,559] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-08-23 10:22:08,559] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-08-23 10:22:08,560] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-08-23 10:22:08,561] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G230/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-08-23 10:22:08,561] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-08-23 10:22:08,562] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G230/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G230/SAMPLES /projectnb2/wax-dk/max/G230/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G230/Scripts/06_CollectMetrics/ [2024-08-23 10:22:09,141] multiqc [WARNING] MultiQC Version v1.24.1 now available! [2024-08-23 10:22:09,141] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G230/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G230/SAMPLES /projectnb2/wax-dk/max/G230/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G230/Scripts/06_CollectMetrics/ [2024-08-23 10:22:09,141] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G230/Scripts/14_final_summary/G230_multiqc_report [2024-08-23 10:22:09,141] multiqc [DEBUG ] Template : default [2024-08-23 10:22:09,141] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-08-23 10:22:09,142] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-08-23 10:22:09,143] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpj_c9og_x [2024-08-23 10:22:09,550] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G230/SAMPLES [2024-08-23 10:22:09,550] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G230/Scripts/03_FASTQC [2024-08-23 10:22:09,550] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G230/Scripts/06_CollectMetrics [2024-08-23 10:22:09,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_1.fq.gz [2024-08-23 10:22:09,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_2.fq.gz [2024-08-23 10:22:09,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M03_primary_unique.bam [2024-08-23 10:22:09,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M03_primary_unique.bam.bai [2024-08-23 10:22:09,740] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:09,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:09,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:09,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:09,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:09,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M03_hist.pdf [2024-08-23 10:22:09,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,822] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,822] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,826] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,826] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,826] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:09,847] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,747] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,747] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:10,766] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G230_M03_featureCounts.out [2024-08-23 10:22:11,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:11,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:11,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M03_metrics [2024-08-23 10:22:11,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M02_CKDL240026854-1A_HKM53DSXC_L1_2.fq.gz [2024-08-23 10:22:11,704] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M02_CKDL240026854-1A_HKM53DSXC_L1_1.fq.gz [2024-08-23 10:22:11,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M02_primary_unique.bam.bai [2024-08-23 10:22:11,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M02_primary_unique.bam [2024-08-23 10:22:11,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:11,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:11,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:11,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:11,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:11,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M02_hist.pdf [2024-08-23 10:22:11,906] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,909] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,915] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,915] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,916] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,916] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,916] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,916] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:11,936] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,843] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,844] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:12,865] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G230_M02_featureCounts.out [2024-08-23 10:22:13,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:13,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:13,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M02_metrics [2024-08-23 10:22:13,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1.fq.gz [2024-08-23 10:22:13,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2.fq.gz [2024-08-23 10:22:13,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M01_primary_unique.bam.bai [2024-08-23 10:22:13,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M01_primary_unique.bam [2024-08-23 10:22:13,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M01_hist.pdf [2024-08-23 10:22:13,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:13,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:13,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:13,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:13,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:13,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,951] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,956] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:13,977] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:14,909] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G230_M01_featureCounts.out [2024-08-23 10:22:15,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:15,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:15,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M01_metrics [2024-08-23 10:22:15,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M04_CKDL240026854-1A_HKM53DSXC_L1_2.fq.gz [2024-08-23 10:22:15,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M04_CKDL240026854-1A_HKM53DSXC_L1_1.fq.gz [2024-08-23 10:22:15,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M04_primary_unique.bam.bai [2024-08-23 10:22:15,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M04_primary_unique.bam [2024-08-23 10:22:15,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M04_metrics [2024-08-23 10:22:15,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G230_M04_metrics [2024-08-23 10:22:15,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M04_metrics [2024-08-23 10:22:15,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M04_metrics [2024-08-23 10:22:15,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M04_metrics [2024-08-23 10:22:15,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G230_M04_hist.pdf [2024-08-23 10:22:15,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M04_featureCounts.out [2024-08-23 10:22:15,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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10:22:18,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:18,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:18,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:18,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:18,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G230_M03_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:18,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search 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G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:19,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:19,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:19,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:19,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:19,016] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2_fastqc.html [2024-08-23 10:22:19,016] multiqc [DEBUG ] File ignored by 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G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:19,085] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:19,085] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:19,088] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:19,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:19,088] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G230_M01_CKDL240026854-1A_HKM53DSXC_L1_1_fastqc.html [2024-08-23 10:22:19,088] multiqc [DEBUG ] File ignored by 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nanostat because it exceeded search pattern filesize limit: fastp.html [2024-08-23 10:22:19,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-08-23 10:22:19,193] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-08-23 10:22:19,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-08-23 10:22:19,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-23 10:22:19,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-23 10:22:19,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-23 10:22:19,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-23 10:22:19,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-08-23 10:22:19,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-08-23 10:22:19,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-08-23 10:22:19,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-08-23 10:22:19,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-08-23 10:22:19,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-08-23 10:22:19,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-08-23 10:22:19,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-08-23 10:22:19,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-08-23 10:22:19,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-08-23 10:22:19,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-08-23 10:22:19,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G230_G230_M04.o9515517 [2024-08-23 10:22:19,375] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G230_G230_M04.o9515517 [2024-08-23 10:22:19,376] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G230_G230_M04.o9515517 [2024-08-23 10:22:19,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G230_G230_M04.o9515517 [2024-08-23 10:22:19,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G230_G230_M04.o9515517 [2024-08-23 10:22:19,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G230_G230_M03.o9515516 [2024-08-23 10:22:19,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G230_G230_M03.o9515516 [2024-08-23 10:22:19,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G230_G230_M03.o9515516 [2024-08-23 10:22:19,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G230_G230_M03.o9515516 [2024-08-23 10:22:19,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G230_G230_M03.o9515516 [2024-08-23 10:22:19,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G230_G230_M02.o9515515 [2024-08-23 10:22:19,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G230_G230_M02.o9515515 [2024-08-23 10:22:19,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G230_G230_M02.o9515515 [2024-08-23 10:22:19,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G230_G230_M02.o9515515 [2024-08-23 10:22:19,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G230_G230_M02.o9515515 [2024-08-23 10:22:19,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G230_G230_M01.o9515514 [2024-08-23 10:22:19,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G230_G230_M01.o9515514 [2024-08-23 10:22:19,429] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G230_G230_M01.o9515514 [2024-08-23 10:22:19,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G230_G230_M01.o9515514 [2024-08-23 10:22:19,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G230_G230_M01.o9515514 [2024-08-23 10:22:19,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-08-23 10:22:19,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,504] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,504] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,504] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,504] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,504] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,505] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,505] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,505] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:19,505] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-08-23 10:22:20,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-23 10:22:20,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-23 10:22:20,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-23 10:22:20,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-23 10:22:20,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-08-23 10:22:20,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-23 10:22:20,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-23 10:22:20,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-23 10:22:20,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-23 10:22:20,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-08-23 10:22:23,816] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-08-23 10:22:23,843] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-08-23 10:22:23,847] multiqc [DEBUG ] No samples found: custom_content [2024-08-23 10:22:23,858] multiqc [DEBUG ] No samples found: ccs [2024-08-23 10:22:23,885] multiqc [DEBUG ] No samples found: ngsderive [2024-08-23 10:22:23,896] multiqc [DEBUG ] No samples found: purple [2024-08-23 10:22:23,903] multiqc [DEBUG ] No samples found: conpair [2024-08-23 10:22:23,931] multiqc [DEBUG ] No samples found: lima [2024-08-23 10:22:23,962] multiqc [DEBUG ] No samples found: peddy [2024-08-23 10:22:23,976] multiqc [DEBUG ] No samples found: somalier [2024-08-23 10:22:24,009] multiqc [DEBUG ] No samples found: methylQA [2024-08-23 10:22:24,052] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-08-23 10:22:24,052] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-08-23 10:22:24,052] multiqc [DEBUG ] No samples found: mosdepth [2024-08-23 10:22:24,061] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-08-23 10:22:24,093] multiqc [DEBUG ] No samples found: qualimap [2024-08-23 10:22:24,127] multiqc [DEBUG ] No samples found: preseq [2024-08-23 10:22:24,146] multiqc [DEBUG ] No samples found: quast [2024-08-23 10:22:24,167] multiqc [DEBUG ] No samples found: qorts [2024-08-23 10:22:24,199] multiqc [DEBUG ] No samples found: rna_seqc [2024-08-23 10:22:24,238] multiqc [DEBUG ] No samples found: rockhopper [2024-08-23 10:22:24,271] multiqc [DEBUG ] No samples found: rsem [2024-08-23 10:22:24,341] multiqc.modules.rseqc.rseqc [INFO ] Found 4 infer_experiment reports [2024-08-23 10:22:24,371] multiqc [DEBUG ] No samples found: busco [2024-08-23 10:22:24,379] multiqc [DEBUG ] No samples found: bustools [2024-08-23 10:22:24,412] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-08-23 10:22:24,437] multiqc [DEBUG ] No samples found: gffcompare [2024-08-23 10:22:24,447] multiqc [DEBUG ] No samples found: disambiguate [2024-08-23 10:22:24,477] multiqc [DEBUG ] No samples found: supernova [2024-08-23 10:22:24,557] multiqc [DEBUG ] No samples found: deeptools [2024-08-23 10:22:24,596] multiqc [DEBUG ] No samples found: sargasso [2024-08-23 10:22:24,628] multiqc [DEBUG ] No samples found: verifybamid [2024-08-23 10:22:24,657] multiqc [DEBUG ] No samples found: mirtrace [2024-08-23 10:22:24,667] multiqc [DEBUG ] No samples found: happy [2024-08-23 10:22:24,676] multiqc [DEBUG ] No samples found: mirtop [2024-08-23 10:22:24,707] multiqc [DEBUG ] No samples found: sambamba [2024-08-23 10:22:24,722] multiqc [DEBUG ] No samples found: homer [2024-08-23 10:22:24,750] multiqc [DEBUG ] No samples found: hops [2024-08-23 10:22:24,763] multiqc [DEBUG ] No samples found: macs2 [2024-08-23 10:22:24,772] multiqc [DEBUG ] No samples found: theta2 [2024-08-23 10:22:24,794] multiqc [DEBUG ] No samples found: snpeff [2024-08-23 10:22:24,834] multiqc [DEBUG ] No samples found: gatk [2024-08-23 10:22:24,843] multiqc [DEBUG ] No samples found: htseq [2024-08-23 10:22:24,862] multiqc [DEBUG ] No samples found: bcftools [2024-08-23 10:22:24,904] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G230_M03_sorted [2024-08-23 10:22:24,906] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G230_M02_sorted [2024-08-23 10:22:24,907] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G230_M01_sorted [2024-08-23 10:22:24,909] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G230_M04_sorted [2024-08-23 10:22:24,909] multiqc.modules.featureCounts.feature_counts [INFO ] Found 4 reports [2024-08-23 10:22:24,983] multiqc [DEBUG ] No samples found: fgbio [2024-08-23 10:22:25,099] multiqc [DEBUG ] No samples found: dragen [2024-08-23 10:22:25,128] multiqc [DEBUG ] No samples found: dedup [2024-08-23 10:22:25,162] multiqc [DEBUG ] No samples found: damageprofiler [2024-08-23 10:22:25,408] multiqc [DEBUG ] No samples found: biobambam2 [2024-08-23 10:22:25,428] multiqc [DEBUG ] No samples found: jcvi [2024-08-23 10:22:25,437] multiqc [DEBUG ] No samples found: mtnucratio [2024-08-23 10:22:25,632] multiqc.modules.picard.picard [INFO ] Found 4 InsertSizeMetrics reports [2024-08-23 10:22:25,640] multiqc.modules.picard.picard [INFO ] Found 4 RnaSeqMetrics reports [2024-08-23 10:22:25,674] multiqc [DEBUG ] No samples found: vep [2024-08-23 10:22:25,723] multiqc [DEBUG ] No samples found: sentieon [2024-08-23 10:22:25,747] multiqc [DEBUG ] No samples found: prokka [2024-08-23 10:22:25,774] multiqc [DEBUG ] No samples found: qc3C [2024-08-23 10:22:25,814] multiqc [DEBUG ] No samples found: nanostat [2024-08-23 10:22:25,824] multiqc [DEBUG ] No samples found: samblaster [2024-08-23 10:22:25,909] multiqc.modules.samtools.samtools [INFO ] Found 12 flagstat reports [2024-08-23 10:22:25,940] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-08-23 10:22:25,949] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-08-23 10:22:25,960] multiqc [DEBUG ] No samples found: bamtools [2024-08-23 10:22:25,966] multiqc [DEBUG ] No samples found: jellyfish [2024-08-23 10:22:25,990] multiqc [DEBUG ] No samples found: vcftools [2024-08-23 10:22:26,002] multiqc [DEBUG ] No samples found: longranger [2024-08-23 10:22:26,036] multiqc [DEBUG ] No samples found: stacks [2024-08-23 10:22:26,049] multiqc [DEBUG ] No samples found: varscan2 [2024-08-23 10:22:26,085] multiqc [DEBUG ] No samples found: snippy [2024-08-23 10:22:26,163] multiqc [DEBUG ] No samples found: bbmap [2024-08-23 10:22:26,198] multiqc [DEBUG ] No samples found: bismark [2024-08-23 10:22:26,230] multiqc [DEBUG ] No samples found: biscuit [2024-08-23 10:22:26,249] multiqc [DEBUG ] No samples found: hicexplorer [2024-08-23 10:22:26,281] multiqc [DEBUG ] No samples found: hicup [2024-08-23 10:22:26,303] multiqc [DEBUG ] No samples found: hicpro [2024-08-23 10:22:26,311] multiqc [DEBUG ] No samples found: salmon [2024-08-23 10:22:26,319] multiqc [DEBUG ] No samples found: kallisto [2024-08-23 10:22:26,338] multiqc [DEBUG ] No samples found: slamdunk [2024-08-23 10:22:26,381] multiqc.modules.star.star [INFO ] Found 4 reports [2024-08-23 10:22:26,391] multiqc [DEBUG ] No samples found: hisat2 [2024-08-23 10:22:26,418] multiqc [DEBUG ] No samples found: tophat [2024-08-23 10:22:26,456] multiqc [DEBUG ] No samples found: bowtie2 [2024-08-23 10:22:26,466] multiqc [DEBUG ] No samples found: bowtie1 [2024-08-23 10:22:26,497] multiqc [DEBUG ] No samples found: snpsplit [2024-08-23 10:22:26,536] multiqc [DEBUG ] No samples found: odgi [2024-08-23 10:22:26,546] multiqc [DEBUG ] No samples found: pangolin [2024-08-23 10:22:26,554] multiqc [DEBUG ] No samples found: kat [2024-08-23 10:22:26,561] multiqc [DEBUG ] No samples found: leehom [2024-08-23 10:22:26,594] multiqc [DEBUG ] No samples found: adapterRemoval [2024-08-23 10:22:26,604] multiqc [DEBUG ] No samples found: clipandmerge [2024-08-23 10:22:26,639] multiqc [DEBUG ] No samples found: cutadapt [2024-08-23 10:22:26,649] multiqc [DEBUG ] No samples found: flexbar [2024-08-23 10:22:26,659] multiqc [DEBUG ] No samples found: kaiju [2024-08-23 10:22:26,666] multiqc [DEBUG ] No samples found: kraken [2024-08-23 10:22:26,676] multiqc [DEBUG ] No samples found: malt [2024-08-23 10:22:26,712] multiqc [DEBUG ] No samples found: trimmomatic [2024-08-23 10:22:26,721] multiqc [DEBUG ] No samples found: sickle [2024-08-23 10:22:26,760] multiqc [DEBUG ] No samples found: skewer [2024-08-23 10:22:26,769] multiqc [DEBUG ] No samples found: sortmerna [2024-08-23 10:22:26,778] multiqc [DEBUG ] No samples found: biobloomtools [2024-08-23 10:22:26,800] multiqc [DEBUG ] No samples found: fastq_screen [2024-08-23 10:22:26,837] multiqc [DEBUG ] No samples found: afterqc [2024-08-23 10:22:26,900] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-23 10:22:26,929] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-23 10:22:26,959] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-23 10:22:26,988] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-08-23 10:22:26,990] multiqc.modules.fastp.fastp [INFO ] Found 4 reports [2024-08-23 10:22:28,073] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2024-08-23 10:22:28,207] multiqc [DEBUG ] No samples found: pychopper [2024-08-23 10:22:28,227] multiqc [DEBUG ] No samples found: pycoqc [2024-08-23 10:22:28,238] multiqc [DEBUG ] No samples found: minionqc [2024-08-23 10:22:28,283] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-08-23 10:22:28,314] multiqc [DEBUG ] No samples found: clusterflow [2024-08-23 10:22:28,352] multiqc [DEBUG ] No samples found: bcl2fastq [2024-08-23 10:22:28,364] multiqc [DEBUG ] No samples found: bclconvert [2024-08-23 10:22:28,382] multiqc [DEBUG ] No samples found: interop [2024-08-23 10:22:28,420] multiqc [DEBUG ] No samples found: ivar [2024-08-23 10:22:28,453] multiqc [DEBUG ] No samples found: flash [2024-08-23 10:22:28,463] multiqc [DEBUG ] No samples found: seqyclean [2024-08-23 10:22:28,471] multiqc [DEBUG ] No samples found: optitype [2024-08-23 10:22:28,494] multiqc [INFO ] Compressing plot data [2024-08-23 10:22:28,941] multiqc [INFO ] Report : multiqc_report.html [2024-08-23 10:22:28,957] multiqc [INFO ] Data : multiqc_data [2024-08-23 10:22:28,957] multiqc [DEBUG ] Moving data file from '/scratch/tmpj_c9og_x/multiqc_data' to '/projectnb/wax-dk/max/G230/Scripts/14_final_summary/G230_multiqc_report/multiqc_data' [2024-08-23 10:22:29,657] multiqc [INFO ] MultiQC complete