[2024-10-09 11:10:49,668] multiqc [DEBUG ] This is MultiQC v1.11 [2024-10-09 11:10:49,669] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-10-09 11:10:49,669] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-10-09 11:10:49,671] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-09 11:10:49,673] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G232_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-10-09 11:10:49,673] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-10-09 11:10:49,673] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G232_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G232_RNAseq/SAMPLES /projectnb/wax-dk/max/G232_RNAseq/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G232_RNAseq/Scripts/06_CollectMetrics/ [2024-10-09 11:10:50,390] multiqc [WARNING] MultiQC Version v1.25.1 now available! [2024-10-09 11:10:50,390] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G232_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G232_RNAseq/SAMPLES /projectnb/wax-dk/max/G232_RNAseq/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G232_RNAseq/Scripts/06_CollectMetrics/ [2024-10-09 11:10:50,390] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G232_RNAseq/Scripts/99_final_summary/G232_RNAseq_multiqc_report [2024-10-09 11:10:50,390] multiqc [DEBUG ] Template : default [2024-10-09 11:10:50,390] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-10-09 11:10:50,391] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-10-09 11:10:50,391] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpxbeuq8oa [2024-10-09 11:10:50,977] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G232_RNAseq/SAMPLES [2024-10-09 11:10:50,977] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G232_RNAseq/Scripts/03_FASTQC [2024-10-09 11:10:50,977] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G232_RNAseq/Scripts/06_CollectMetrics [2024-10-09 11:10:51,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M07_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:10:51,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M07_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:10:51,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,316] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,320] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,321] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:51,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M07_SJ.out.tab [2024-10-09 11:10:53,291] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:53,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:53,294] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:53,294] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:53,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:53,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M07_hist.pdf [2024-10-09 11:10:53,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,401] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,401] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,402] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,402] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,402] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,402] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,402] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:53,421] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,385] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,389] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,394] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:54,414] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M07_featureCounts.out [2024-10-09 11:10:55,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:55,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:55,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M07_metrics [2024-10-09 11:10:55,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M10_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:10:55,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M10_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:10:55,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,423] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:55,423] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M10_SJ.out.tab [2024-10-09 11:10:57,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M10_hist.pdf [2024-10-09 11:10:57,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:57,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:57,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:57,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:57,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:57,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,603] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,609] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:57,630] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,576] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,577] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:58,596] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2024-10-09 11:10:59,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:59,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:59,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_metrics [2024-10-09 11:10:59,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M14_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:10:59,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M14_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:10:59,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,635] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,635] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:10:59,635] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M14_SJ.out.tab [2024-10-09 11:11:01,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M14_hist.pdf [2024-10-09 11:11:01,514] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:01,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:01,517] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:01,517] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:01,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:01,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,612] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,612] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,612] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,613] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,613] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:01,633] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,583] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,584] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:02,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2024-10-09 11:11:03,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:03,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:03,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_metrics [2024-10-09 11:11:03,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M11_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:03,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M11_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:03,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,641] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:03,677] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M11_SJ.out.tab [2024-10-09 11:11:05,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:05,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:05,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:05,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:05,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:05,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M11_hist.pdf [2024-10-09 11:11:05,489] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:05,518] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,461] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,461] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,462] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,462] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,462] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,462] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,462] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:06,485] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2024-10-09 11:11:07,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:07,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:07,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_metrics [2024-10-09 11:11:07,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M03_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:07,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M03_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:07,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,561] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:07,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M03_SJ.out.tab [2024-10-09 11:11:09,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M03_hist.pdf [2024-10-09 11:11:09,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:09,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:09,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:09,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:09,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:09,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,745] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,745] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,745] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,750] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,750] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,751] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,751] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,751] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,751] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,751] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:09,772] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,720] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,727] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:10,749] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2024-10-09 11:11:11,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:11,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:11,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_metrics [2024-10-09 11:11:11,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M15_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:11,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M15_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:11,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,774] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,775] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,775] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:11,775] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M15_SJ.out.tab [2024-10-09 11:11:13,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M15_hist.pdf [2024-10-09 11:11:13,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:13,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:13,855] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:13,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:13,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:13,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,951] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,956] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:13,979] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:14,931] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2024-10-09 11:11:15,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:15,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:15,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_metrics [2024-10-09 11:11:15,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M12_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:15,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M12_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:15,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,970] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,970] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,970] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,970] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:15,970] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M12_SJ.out.tab [2024-10-09 11:11:18,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:18,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:18,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:18,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:18,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:18,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M12_hist.pdf [2024-10-09 11:11:18,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,160] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,161] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:18,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:19,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2024-10-09 11:11:20,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:20,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:20,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_metrics [2024-10-09 11:11:20,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M04_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:20,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M04_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:20,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,142] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:20,143] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M04_SJ.out.tab [2024-10-09 11:11:22,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M04_hist.pdf [2024-10-09 11:11:22,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:22,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:22,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:22,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:22,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:22,417] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,425] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,425] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,425] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,425] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:22,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,389] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:23,414] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2024-10-09 11:11:24,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:24,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:24,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_metrics [2024-10-09 11:11:24,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M16_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:24,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M16_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:24,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:24,452] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M16_SJ.out.tab [2024-10-09 11:11:26,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M16_hist.pdf [2024-10-09 11:11:26,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:26,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:26,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:26,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:26,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:26,677] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,680] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:26,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,604] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,604] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:27,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2024-10-09 11:11:28,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:28,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:28,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_metrics [2024-10-09 11:11:28,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M01_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:28,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M01_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:28,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,599] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:28,600] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M01_SJ.out.tab [2024-10-09 11:11:30,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M01_hist.pdf [2024-10-09 11:11:30,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:30,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:30,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:30,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:30,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:30,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,848] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:30,873] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,781] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,781] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,781] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,782] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:31,803] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2024-10-09 11:11:32,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:32,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:32,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_metrics [2024-10-09 11:11:32,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M08_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:32,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M08_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:32,791] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,801] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:32,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M08_SJ.out.tab [2024-10-09 11:11:34,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:34,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:34,763] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:34,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:34,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:34,837] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M08_hist.pdf [2024-10-09 11:11:34,857] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,860] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,860] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,865] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:34,885] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,796] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,796] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,797] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,797] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:35,817] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M08_featureCounts.out [2024-10-09 11:11:36,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:36,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:36,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M08_metrics [2024-10-09 11:11:36,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M13_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:36,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M13_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:36,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,831] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,832] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:36,832] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M13_SJ.out.tab [2024-10-09 11:11:38,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M13_hist.pdf [2024-10-09 11:11:38,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:38,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:38,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:38,635] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:38,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:38,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,717] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:38,736] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,645] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,651] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:39,670] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2024-10-09 11:11:40,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:40,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:40,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_metrics [2024-10-09 11:11:40,590] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M05_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:40,592] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M05_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:40,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,667] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:40,668] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M05_SJ.out.tab [2024-10-09 11:11:42,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:42,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:42,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:42,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:42,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:42,775] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M05_hist.pdf [2024-10-09 11:11:42,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,811] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,811] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,816] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,817] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:42,836] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,752] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,752] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,752] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,752] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,753] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,753] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:43,773] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M05_featureCounts.out [2024-10-09 11:11:44,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:44,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:44,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M05_metrics [2024-10-09 11:11:44,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M02_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:44,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M02_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:44,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,833] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,833] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,833] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,834] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,834] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:44,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M02_SJ.out.tab [2024-10-09 11:11:46,762] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M02_hist.pdf [2024-10-09 11:11:46,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:46,822] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:46,822] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:46,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:46,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:46,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,900] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,904] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:46,923] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,824] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:47,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2024-10-09 11:11:48,735] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:48,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:48,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_metrics [2024-10-09 11:11:48,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M09_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2024-10-09 11:11:48,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M09_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2024-10-09 11:11:48,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:48,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M09_SJ.out.tab [2024-10-09 11:11:50,677] multiqc [DEBUG ] File ignored by ccs/v4 because it 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[2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:52,721] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M06_SJ.out.tab [2024-10-09 11:11:54,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M06_hist.pdf [2024-10-09 11:11:54,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:54,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:54,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:54,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:54,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:54,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:54,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:54,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:54,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:54,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: 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] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:54,910] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:55,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:55,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:55,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:55,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:55,834] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: 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] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:55,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M06_featureCounts.out [2024-10-09 11:11:56,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:56,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:56,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M06_metrics [2024-10-09 11:11:56,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-09 11:11:56,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-09 11:11:56,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-09 11:11:56,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-09 11:11:56,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-09 11:11:56,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-09 11:11:56,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-10-09 11:11:56,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-10-09 11:11:56,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-10-09 11:11:56,852] 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11:11:57,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G232_RNAseq_G232_M05.o462736 [2024-10-09 11:11:57,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G232_RNAseq_G232_M05.o462736 [2024-10-09 11:11:57,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G232_RNAseq_G232_M05.o462736 [2024-10-09 11:11:57,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G232_RNAseq_G232_M05.o462736 [2024-10-09 11:11:57,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G232_RNAseq_G232_M14.o462745 [2024-10-09 11:11:57,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G232_RNAseq_G232_M14.o462745 [2024-10-09 11:11:57,089] multiqc [DEBUG ] File ignored 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11:12:03,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-10-09 11:12:03,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-10-09 11:12:03,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-10-09 11:12:03,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-10-09 11:12:03,634] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,637] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:03,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-10-09 11:12:04,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-09 11:12:04,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-09 11:12:04,417] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-09 11:12:04,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-09 11:12:04,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-09 11:12:04,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-09 11:12:04,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-09 11:12:04,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-09 11:12:04,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-09 11:12:04,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-09 11:12:07,661] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-10-09 11:12:07,683] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-10-09 11:12:07,686] multiqc [DEBUG ] No samples found: custom_content [2024-10-09 11:12:07,699] multiqc [DEBUG ] No samples found: ccs [2024-10-09 11:12:07,720] multiqc [DEBUG ] No samples found: ngsderive [2024-10-09 11:12:07,727] multiqc [DEBUG ] No samples found: purple [2024-10-09 11:12:07,733] multiqc [DEBUG ] No samples found: conpair [2024-10-09 11:12:07,757] multiqc [DEBUG ] No samples found: lima [2024-10-09 11:12:07,799] multiqc [DEBUG ] No samples found: peddy [2024-10-09 11:12:07,812] multiqc [DEBUG ] No samples found: somalier [2024-10-09 11:12:07,843] multiqc [DEBUG ] No samples found: methylQA [2024-10-09 11:12:07,881] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-10-09 11:12:07,881] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-10-09 11:12:07,882] multiqc [DEBUG ] No samples found: mosdepth [2024-10-09 11:12:07,890] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-09 11:12:07,910] multiqc [DEBUG ] No samples found: qualimap [2024-10-09 11:12:07,934] multiqc [DEBUG ] No samples found: preseq [2024-10-09 11:12:07,956] multiqc [DEBUG ] No samples found: quast [2024-10-09 11:12:07,980] multiqc [DEBUG ] No samples found: qorts [2024-10-09 11:12:08,013] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-09 11:12:08,049] multiqc [DEBUG ] No samples found: rockhopper [2024-10-09 11:12:08,087] multiqc [DEBUG ] No samples found: rsem [2024-10-09 11:12:08,160] multiqc.modules.rseqc.rseqc [INFO ] Found 16 infer_experiment reports [2024-10-09 11:12:08,180] multiqc [DEBUG ] No samples found: busco [2024-10-09 11:12:08,188] multiqc [DEBUG ] No samples found: bustools [2024-10-09 11:12:08,221] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-09 11:12:08,253] multiqc [DEBUG ] No samples found: gffcompare [2024-10-09 11:12:08,261] multiqc [DEBUG ] No samples found: disambiguate [2024-10-09 11:12:08,297] multiqc [DEBUG ] No samples found: supernova [2024-10-09 11:12:08,393] multiqc [DEBUG ] No samples found: deeptools [2024-10-09 11:12:08,422] multiqc [DEBUG ] No samples found: sargasso [2024-10-09 11:12:08,446] multiqc [DEBUG ] No samples found: verifybamid [2024-10-09 11:12:08,464] multiqc [DEBUG ] No samples found: mirtrace [2024-10-09 11:12:08,472] multiqc [DEBUG ] No samples found: happy [2024-10-09 11:12:08,483] multiqc [DEBUG ] No samples found: mirtop [2024-10-09 11:12:08,523] multiqc [DEBUG ] No samples found: sambamba [2024-10-09 11:12:08,535] multiqc [DEBUG ] No samples found: homer [2024-10-09 11:12:08,573] multiqc [DEBUG ] No samples found: hops [2024-10-09 11:12:08,584] multiqc [DEBUG ] No samples found: macs2 [2024-10-09 11:12:08,590] multiqc [DEBUG ] No samples found: theta2 [2024-10-09 11:12:08,624] multiqc [DEBUG ] No samples found: snpeff [2024-10-09 11:12:08,647] multiqc [DEBUG ] No samples found: gatk [2024-10-09 11:12:08,655] multiqc [DEBUG ] No samples found: htseq [2024-10-09 11:12:08,665] multiqc [DEBUG ] No samples found: bcftools [2024-10-09 11:12:08,688] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M07_sorted [2024-10-09 11:12:08,690] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M10_sorted [2024-10-09 11:12:08,693] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M14_sorted [2024-10-09 11:12:08,696] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M11_sorted [2024-10-09 11:12:08,698] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M03_sorted [2024-10-09 11:12:08,701] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M15_sorted [2024-10-09 11:12:08,703] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M12_sorted [2024-10-09 11:12:08,705] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M04_sorted [2024-10-09 11:12:08,708] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M16_sorted [2024-10-09 11:12:08,710] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M01_sorted [2024-10-09 11:12:08,713] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M08_sorted [2024-10-09 11:12:08,715] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M13_sorted [2024-10-09 11:12:08,717] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M05_sorted [2024-10-09 11:12:08,719] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M02_sorted [2024-10-09 11:12:08,720] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M09_sorted [2024-10-09 11:12:08,721] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M06_sorted [2024-10-09 11:12:08,721] multiqc.modules.featureCounts.feature_counts [INFO ] Found 16 reports [2024-10-09 11:12:08,782] multiqc [DEBUG ] No samples found: fgbio [2024-10-09 11:12:08,876] multiqc [DEBUG ] No samples found: dragen [2024-10-09 11:12:08,918] multiqc [DEBUG ] No samples found: dedup [2024-10-09 11:12:08,955] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-09 11:12:09,151] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-09 11:12:09,172] multiqc [DEBUG ] No samples found: jcvi [2024-10-09 11:12:09,182] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-09 11:12:09,830] multiqc.modules.picard.picard [INFO ] Found 16 InsertSizeMetrics reports [2024-10-09 11:12:09,857] multiqc.modules.picard.picard [INFO ] Found 16 RnaSeqMetrics reports [2024-10-09 11:12:09,873] multiqc [DEBUG ] No samples found: vep [2024-10-09 11:12:09,890] multiqc [DEBUG ] No samples found: sentieon [2024-10-09 11:12:09,897] multiqc [DEBUG ] No samples found: prokka [2024-10-09 11:12:09,928] multiqc [DEBUG ] No samples found: qc3C [2024-10-09 11:12:09,978] multiqc [DEBUG ] No samples found: nanostat [2024-10-09 11:12:09,987] multiqc [DEBUG ] No samples found: samblaster [2024-10-09 11:12:10,073] multiqc.modules.samtools.samtools [INFO ] Found 48 flagstat reports [2024-10-09 11:12:10,103] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-09 11:12:10,112] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-10-09 11:12:10,120] multiqc [DEBUG ] No samples found: bamtools [2024-10-09 11:12:10,125] multiqc [DEBUG ] No samples found: jellyfish [2024-10-09 11:12:10,135] multiqc [DEBUG ] No samples found: vcftools [2024-10-09 11:12:10,142] multiqc [DEBUG ] No samples found: longranger [2024-10-09 11:12:10,164] multiqc [DEBUG ] No samples found: stacks [2024-10-09 11:12:10,178] multiqc [DEBUG ] No samples found: varscan2 [2024-10-09 11:12:10,193] multiqc [DEBUG ] No samples found: snippy [2024-10-09 11:12:10,264] multiqc [DEBUG ] No samples found: bbmap [2024-10-09 11:12:10,286] multiqc [DEBUG ] No samples found: bismark [2024-10-09 11:12:10,307] multiqc [DEBUG ] No samples found: biscuit [2024-10-09 11:12:10,316] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-09 11:12:10,336] multiqc [DEBUG ] No samples found: hicup [2024-10-09 11:12:10,358] multiqc [DEBUG ] No samples found: hicpro [2024-10-09 11:12:10,364] multiqc [DEBUG ] No samples found: salmon [2024-10-09 11:12:10,370] multiqc [DEBUG ] No samples found: kallisto [2024-10-09 11:12:10,395] multiqc [DEBUG ] No samples found: slamdunk [2024-10-09 11:12:12,149] multiqc.modules.star.star [INFO ] Found 16 reports and 16 gene count files [2024-10-09 11:12:12,158] multiqc [DEBUG ] No samples found: hisat2 [2024-10-09 11:12:12,185] multiqc [DEBUG ] No samples found: tophat [2024-10-09 11:12:12,223] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-09 11:12:12,233] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-09 11:12:12,263] multiqc [DEBUG ] No samples found: snpsplit [2024-10-09 11:12:12,301] multiqc [DEBUG ] No samples found: odgi [2024-10-09 11:12:12,315] multiqc [DEBUG ] No samples found: pangolin [2024-10-09 11:12:12,322] multiqc [DEBUG ] No samples found: kat [2024-10-09 11:12:12,328] multiqc [DEBUG ] No samples found: leehom [2024-10-09 11:12:12,356] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-09 11:12:12,365] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-09 11:12:12,388] multiqc [DEBUG ] No samples found: cutadapt [2024-10-09 11:12:12,395] multiqc [DEBUG ] No samples found: flexbar [2024-10-09 11:12:12,401] multiqc [DEBUG ] No samples found: kaiju [2024-10-09 11:12:12,409] multiqc [DEBUG ] No samples found: kraken [2024-10-09 11:12:12,414] multiqc [DEBUG ] No samples found: malt [2024-10-09 11:12:12,437] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-09 11:12:12,443] multiqc [DEBUG ] No samples found: sickle [2024-10-09 11:12:12,473] multiqc [DEBUG ] No samples found: skewer [2024-10-09 11:12:12,481] multiqc [DEBUG ] No samples found: sortmerna [2024-10-09 11:12:12,488] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-09 11:12:12,520] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-09 11:12:12,550] multiqc [DEBUG ] No samples found: afterqc [2024-10-09 11:12:12,612] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,628] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,641] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,661] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,678] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,699] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,723] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,746] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,766] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,802] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,827] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,857] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,875] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,896] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,919] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,940] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-09 11:12:12,941] multiqc.modules.fastp.fastp [INFO ] Found 16 reports [2024-10-09 11:12:15,900] multiqc.modules.fastqc.fastqc [INFO ] Found 32 reports [2024-10-09 11:12:16,375] multiqc [DEBUG ] No samples found: pychopper [2024-10-09 11:12:16,405] multiqc [DEBUG ] No samples found: pycoqc [2024-10-09 11:12:16,415] multiqc [DEBUG ] No samples found: minionqc [2024-10-09 11:12:16,446] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-09 11:12:16,484] multiqc [DEBUG ] No samples found: clusterflow [2024-10-09 11:12:16,507] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-09 11:12:16,516] multiqc [DEBUG ] No samples found: bclconvert [2024-10-09 11:12:16,544] multiqc [DEBUG ] No samples found: interop [2024-10-09 11:12:16,567] multiqc [DEBUG ] No samples found: ivar [2024-10-09 11:12:16,595] multiqc [DEBUG ] No samples found: flash [2024-10-09 11:12:16,604] multiqc [DEBUG ] No samples found: seqyclean [2024-10-09 11:12:16,613] multiqc [DEBUG ] No samples found: optitype [2024-10-09 11:12:16,695] multiqc [INFO ] Compressing plot data [2024-10-09 11:12:18,504] multiqc [INFO ] Report : multiqc_report.html [2024-10-09 11:12:18,504] multiqc [INFO ] Data : multiqc_data [2024-10-09 11:12:18,504] multiqc [DEBUG ] Moving data file from '/scratch/tmpxbeuq8oa/multiqc_data' to '/projectnb/wax-dk/max/G232_RNAseq/Scripts/99_final_summary/G232_RNAseq_multiqc_report/multiqc_data' [2024-10-09 11:12:19,152] multiqc [INFO ] MultiQC complete