[2024-10-22 15:47:31,027] multiqc [DEBUG ] This is MultiQC v1.11 [2024-10-22 15:47:31,027] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-10-22 15:47:31,027] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-10-22 15:47:31,028] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-22 15:47:31,030] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-10-22 15:47:31,030] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-10-22 15:47:31,031] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2024-10-22 15:47:31,031] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/06_CollectMetrics/ [2024-10-22 15:47:31,746] multiqc [WARNING] MultiQC Version v1.25.1 now available! [2024-10-22 15:47:31,747] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/06_CollectMetrics/ [2024-10-22 15:47:31,747] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G237_Andrea_RNAseq/Scripts/99_final_summary/G237_Andrea_RNAseq_multiqc_report [2024-10-22 15:47:31,747] multiqc [DEBUG ] Template : default [2024-10-22 15:47:31,747] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-10-22 15:47:31,748] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-10-22 15:47:31,748] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpqdoq11zs [2024-10-22 15:47:31,815] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES [2024-10-22 15:47:31,815] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC [2024-10-22 15:47:31,815] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/06_CollectMetrics [2024-10-22 15:47:31,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:31,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:32,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,044] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,044] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,049] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,049] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:32,050] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M02_SJ.out.tab [2024-10-22 15:47:34,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:34,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,009] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,009] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,010] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,010] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M02_featureCounts.out [2024-10-22 15:47:35,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:35,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:36,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,057] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:36,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M02a_SJ.out.tab [2024-10-22 15:47:38,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,036] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,036] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,042] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,064] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,966] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,969] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:38,995] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M02a_featureCounts.out [2024-10-22 15:47:39,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:39,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:39,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,993] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,993] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:39,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M03_SJ.out.tab [2024-10-22 15:47:42,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,259] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,264] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:42,285] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,231] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,231] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,232] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:43,254] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M03_featureCounts.out [2024-10-22 15:47:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:44,204] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,212] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,212] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,212] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,213] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,213] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:44,213] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M03a_SJ.out.tab [2024-10-22 15:47:46,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,477] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,477] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,477] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,482] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,482] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,482] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,483] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,483] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,483] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,483] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:46,505] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,413] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,417] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,423] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,423] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,423] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,423] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:47,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M03a_featureCounts.out [2024-10-22 15:47:48,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:48,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:48,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,371] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,376] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,376] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,376] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,376] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,376] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,377] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,377] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,377] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,377] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01_primary_unique.bam.bai1 [2024-10-22 15:47:48,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,423] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,423] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,423] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,424] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,424] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,424] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,424] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,424] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:48,424] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01_SJ.out.tab [2024-10-22 15:47:50,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:50,689] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:51,618] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01_featureCounts.out [2024-10-22 15:47:52,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:52,504] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:52,615] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,624] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:52,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M04_SJ.out.tab [2024-10-22 15:47:54,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:54,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:55,698] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M04_featureCounts.out [2024-10-22 15:47:56,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:47:56,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:47:56,683] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,686] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:56,691] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01a_SJ.out.tab [2024-10-22 15:47:58,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,872] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:58,894] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,799] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,804] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:47:59,826] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M01a_featureCounts.out [2024-10-22 15:48:00,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2.fq.gz [2024-10-22 15:48:00,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1.fq.gz [2024-10-22 15:48:00,801] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,809] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:00,810] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M04a_SJ.out.tab [2024-10-22 15:48:02,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,951] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,956] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:02,977] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,890] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,890] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,890] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:03,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G237_M04a_featureCounts.out [2024-10-22 15:48:04,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:04,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:04,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:04,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-22 15:48:04,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-22 15:48:04,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-22 15:48:04,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-10-22 15:48:04,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-10-22 15:48:04,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-10-22 15:48:04,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-10-22 15:48:04,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-10-22 15:48:04,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-10-22 15:48:04,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-10-22 15:48:04,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-10-22 15:48:04,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-10-22 15:48:04,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01.o758118 [2024-10-22 15:48:04,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01.o758118 [2024-10-22 15:48:04,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01.o758118 [2024-10-22 15:48:04,889] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01.o758118 [2024-10-22 15:48:04,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01.o758118 [2024-10-22 15:48:04,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01a.o758119 [2024-10-22 15:48:04,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01a.o758119 [2024-10-22 15:48:04,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01a.o758119 [2024-10-22 15:48:04,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01a.o758119 [2024-10-22 15:48:04,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M01a.o758119 [2024-10-22 15:48:04,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02.o758120 [2024-10-22 15:48:04,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02.o758120 [2024-10-22 15:48:04,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02.o758120 [2024-10-22 15:48:04,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02.o758120 [2024-10-22 15:48:04,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02.o758120 [2024-10-22 15:48:05,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04.o758125 [2024-10-22 15:48:05,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04.o758125 [2024-10-22 15:48:05,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04.o758125 [2024-10-22 15:48:05,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04.o758125 [2024-10-22 15:48:05,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04.o758125 [2024-10-22 15:48:05,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02a.o758121 [2024-10-22 15:48:05,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02a.o758121 [2024-10-22 15:48:05,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02a.o758121 [2024-10-22 15:48:05,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02a.o758121 [2024-10-22 15:48:05,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M02a.o758121 [2024-10-22 15:48:05,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04a.o758126 [2024-10-22 15:48:05,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04a.o758126 [2024-10-22 15:48:05,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04a.o758126 [2024-10-22 15:48:05,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04a.o758126 [2024-10-22 15:48:05,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M04a.o758126 [2024-10-22 15:48:05,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03.o758122 [2024-10-22 15:48:05,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03.o758122 [2024-10-22 15:48:05,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03.o758122 [2024-10-22 15:48:05,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03.o758122 [2024-10-22 15:48:05,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03.o758122 [2024-10-22 15:48:05,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03a.o758123 [2024-10-22 15:48:05,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03a.o758123 [2024-10-22 15:48:05,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03a.o758123 [2024-10-22 15:48:05,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03a.o758123 [2024-10-22 15:48:05,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G237_Andrea_RNAseq_G237_M03a.o758123 [2024-10-22 15:48:05,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-10-22 15:48:05,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2024-10-22 15:48:05,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,372] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,377] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,511] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,516] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,516] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,612] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,617] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:05,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,830] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,831] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:05,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,929] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,929] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:05,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,062] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,068] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,256] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,259] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,402] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,521] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,526] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:06,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,616] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,720] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,724] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,856] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:06,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:06,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,199] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,326] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,327] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,327] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,327] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,327] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,327] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,419] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,424] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,528] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2024-10-22 15:48:07,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,784] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,788] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,882] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,882] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,882] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,882] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,882] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,883] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.html [2024-10-22 15:48:07,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,982] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:07,988] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.html [2024-10-22 15:48:08,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:08,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:08,102] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:08,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:08,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-10-22 15:48:08,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-10-22 15:48:08,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-10-22 15:48:08,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2024-10-22 15:48:08,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-22 15:48:08,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-22 15:48:08,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-10-22 15:48:08,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-10-22 15:48:08,159] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-10-22 15:48:08,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,208] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,213] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-10-22 15:48:08,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-22 15:48:08,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-22 15:48:08,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-22 15:48:08,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-22 15:48:08,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-10-22 15:48:09,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-22 15:48:09,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-22 15:48:09,035] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-22 15:48:09,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-22 15:48:09,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-10-22 15:48:12,551] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-10-22 15:48:12,578] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-10-22 15:48:12,582] multiqc [DEBUG ] No samples found: custom_content [2024-10-22 15:48:12,612] multiqc [DEBUG ] No samples found: ccs [2024-10-22 15:48:12,646] multiqc [DEBUG ] No samples found: ngsderive [2024-10-22 15:48:12,659] multiqc [DEBUG ] No samples found: purple [2024-10-22 15:48:12,668] multiqc [DEBUG ] No samples found: conpair [2024-10-22 15:48:12,706] multiqc [DEBUG ] No samples found: lima [2024-10-22 15:48:12,752] multiqc [DEBUG ] No samples found: peddy [2024-10-22 15:48:12,761] multiqc [DEBUG ] No samples found: somalier [2024-10-22 15:48:12,795] multiqc [DEBUG ] No samples found: methylQA [2024-10-22 15:48:12,833] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-10-22 15:48:12,833] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-10-22 15:48:12,833] multiqc [DEBUG ] No samples found: mosdepth [2024-10-22 15:48:12,841] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-22 15:48:12,867] multiqc [DEBUG ] No samples found: qualimap [2024-10-22 15:48:12,902] multiqc [DEBUG ] No samples found: preseq [2024-10-22 15:48:12,921] multiqc [DEBUG ] No samples found: quast [2024-10-22 15:48:12,961] multiqc [DEBUG ] No samples found: qorts [2024-10-22 15:48:12,992] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-22 15:48:13,025] multiqc [DEBUG ] No samples found: rockhopper [2024-10-22 15:48:13,055] multiqc [DEBUG ] No samples found: rsem [2024-10-22 15:48:13,112] multiqc.modules.rseqc.rseqc [INFO ] Found 8 infer_experiment reports [2024-10-22 15:48:13,143] multiqc [DEBUG ] No samples found: busco [2024-10-22 15:48:13,173] multiqc [DEBUG ] No samples found: bustools [2024-10-22 15:48:13,198] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-22 15:48:13,232] multiqc [DEBUG ] No samples found: gffcompare [2024-10-22 15:48:13,241] multiqc [DEBUG ] No samples found: disambiguate [2024-10-22 15:48:13,284] multiqc [DEBUG ] No samples found: supernova [2024-10-22 15:48:13,389] multiqc [DEBUG ] No samples found: deeptools [2024-10-22 15:48:13,411] multiqc [DEBUG ] No samples found: sargasso [2024-10-22 15:48:13,435] multiqc [DEBUG ] No samples found: verifybamid [2024-10-22 15:48:13,468] multiqc [DEBUG ] No samples found: mirtrace [2024-10-22 15:48:13,476] multiqc [DEBUG ] No samples found: happy [2024-10-22 15:48:13,484] multiqc [DEBUG ] No samples found: mirtop [2024-10-22 15:48:13,511] multiqc [DEBUG ] No samples found: sambamba [2024-10-22 15:48:13,523] multiqc [DEBUG ] No samples found: homer [2024-10-22 15:48:13,529] multiqc [DEBUG ] No samples found: hops [2024-10-22 15:48:13,535] multiqc [DEBUG ] No samples found: macs2 [2024-10-22 15:48:13,540] multiqc [DEBUG ] No samples found: theta2 [2024-10-22 15:48:13,573] multiqc [DEBUG ] No samples found: snpeff [2024-10-22 15:48:13,607] multiqc [DEBUG ] No samples found: gatk [2024-10-22 15:48:13,616] multiqc [DEBUG ] No samples found: htseq [2024-10-22 15:48:13,629] multiqc [DEBUG ] No samples found: bcftools [2024-10-22 15:48:13,636] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M02_sorted [2024-10-22 15:48:13,638] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M02a_sorted [2024-10-22 15:48:13,640] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M03_sorted [2024-10-22 15:48:13,641] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M03a_sorted [2024-10-22 15:48:13,642] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M01_sorted [2024-10-22 15:48:13,643] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M04_sorted [2024-10-22 15:48:13,644] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M01a_sorted [2024-10-22 15:48:13,645] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G237_M04a_sorted [2024-10-22 15:48:13,645] multiqc.modules.featureCounts.feature_counts [INFO ] Found 8 reports [2024-10-22 15:48:13,701] multiqc [DEBUG ] No samples found: fgbio [2024-10-22 15:48:13,765] multiqc [DEBUG ] No samples found: dragen [2024-10-22 15:48:13,794] multiqc [DEBUG ] No samples found: dedup [2024-10-22 15:48:13,803] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-22 15:48:13,982] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-22 15:48:14,006] multiqc [DEBUG ] No samples found: jcvi [2024-10-22 15:48:14,015] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-22 15:48:14,020] multiqc [DEBUG ] No samples found: picard [2024-10-22 15:48:14,043] multiqc [DEBUG ] No samples found: vep [2024-10-22 15:48:14,079] multiqc [DEBUG ] No samples found: sentieon [2024-10-22 15:48:14,088] multiqc [DEBUG ] No samples found: prokka [2024-10-22 15:48:14,129] multiqc [DEBUG ] No samples found: qc3C [2024-10-22 15:48:14,138] multiqc [DEBUG ] No samples found: nanostat [2024-10-22 15:48:14,145] multiqc [DEBUG ] No samples found: samblaster [2024-10-22 15:48:14,206] multiqc.modules.samtools.samtools [INFO ] Found 24 flagstat reports [2024-10-22 15:48:14,235] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-22 15:48:14,243] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-10-22 15:48:14,252] multiqc [DEBUG ] No samples found: bamtools [2024-10-22 15:48:14,258] multiqc [DEBUG ] No samples found: jellyfish [2024-10-22 15:48:14,268] multiqc [DEBUG ] No samples found: vcftools [2024-10-22 15:48:14,274] multiqc [DEBUG ] No samples found: longranger [2024-10-22 15:48:14,297] multiqc [DEBUG ] No samples found: stacks [2024-10-22 15:48:14,306] multiqc [DEBUG ] No samples found: varscan2 [2024-10-22 15:48:14,313] multiqc [DEBUG ] No samples found: snippy [2024-10-22 15:48:14,371] multiqc [DEBUG ] No samples found: bbmap [2024-10-22 15:48:14,403] multiqc [DEBUG ] No samples found: bismark [2024-10-22 15:48:14,441] multiqc [DEBUG ] No samples found: biscuit [2024-10-22 15:48:14,451] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-22 15:48:14,477] multiqc [DEBUG ] No samples found: hicup [2024-10-22 15:48:14,486] multiqc [DEBUG ] No samples found: hicpro [2024-10-22 15:48:14,494] multiqc [DEBUG ] No samples found: salmon [2024-10-22 15:48:14,500] multiqc [DEBUG ] No samples found: kallisto [2024-10-22 15:48:14,507] multiqc [DEBUG ] No samples found: slamdunk [2024-10-22 15:48:15,374] multiqc.modules.star.star [INFO ] Found 8 reports and 8 gene count files [2024-10-22 15:48:15,379] multiqc [DEBUG ] No samples found: hisat2 [2024-10-22 15:48:15,384] multiqc [DEBUG ] No samples found: tophat [2024-10-22 15:48:15,420] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-22 15:48:15,430] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-22 15:48:15,460] multiqc [DEBUG ] No samples found: snpsplit [2024-10-22 15:48:15,495] multiqc [DEBUG ] No samples found: odgi [2024-10-22 15:48:15,504] multiqc [DEBUG ] No samples found: pangolin [2024-10-22 15:48:15,512] multiqc [DEBUG ] No samples found: kat [2024-10-22 15:48:15,518] multiqc [DEBUG ] No samples found: leehom [2024-10-22 15:48:15,548] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-22 15:48:15,556] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-22 15:48:15,594] multiqc [DEBUG ] No samples found: cutadapt [2024-10-22 15:48:15,603] multiqc [DEBUG ] No samples found: flexbar [2024-10-22 15:48:15,610] multiqc [DEBUG ] No samples found: kaiju [2024-10-22 15:48:15,621] multiqc [DEBUG ] No samples found: kraken [2024-10-22 15:48:15,631] multiqc [DEBUG ] No samples found: malt [2024-10-22 15:48:15,665] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-22 15:48:15,676] multiqc [DEBUG ] No samples found: sickle [2024-10-22 15:48:15,711] multiqc [DEBUG ] No samples found: skewer [2024-10-22 15:48:15,719] multiqc [DEBUG ] No samples found: sortmerna [2024-10-22 15:48:15,727] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-22 15:48:15,733] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-22 15:48:15,768] multiqc [DEBUG ] No samples found: afterqc [2024-10-22 15:48:15,851] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:15,876] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:15,901] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:15,922] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:15,950] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:15,976] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:15,993] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:16,013] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-10-22 15:48:16,014] multiqc.modules.fastp.fastp [INFO ] Found 4 reports [2024-10-22 15:48:16,632] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip' as already parsed 'G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1' [2024-10-22 15:48:16,683] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip' as already parsed 'G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2' [2024-10-22 15:48:16,684] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip' as already parsed 'G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2' [2024-10-22 15:48:16,684] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip' as already parsed 'G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1' [2024-10-22 15:48:16,833] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip' as already parsed 'G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1' [2024-10-22 15:48:16,833] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip' as already parsed 'G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2' [2024-10-22 15:48:16,833] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip' as already parsed 'G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2' [2024-10-22 15:48:16,833] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip' as already parsed 'G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1' [2024-10-22 15:48:16,833] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2024-10-22 15:48:16,834] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2024-10-22 15:48:16,962] multiqc [DEBUG ] No samples found: pychopper [2024-10-22 15:48:16,989] multiqc [DEBUG ] No samples found: pycoqc [2024-10-22 15:48:16,998] multiqc [DEBUG ] No samples found: minionqc [2024-10-22 15:48:17,029] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-22 15:48:17,079] multiqc [DEBUG ] No samples found: clusterflow [2024-10-22 15:48:17,110] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-22 15:48:17,121] multiqc [DEBUG ] No samples found: bclconvert [2024-10-22 15:48:17,152] multiqc [DEBUG ] No samples found: interop [2024-10-22 15:48:17,194] multiqc [DEBUG ] No samples found: ivar [2024-10-22 15:48:17,224] multiqc [DEBUG ] No samples found: flash [2024-10-22 15:48:17,232] multiqc [DEBUG ] No samples found: seqyclean [2024-10-22 15:48:17,241] multiqc [DEBUG ] No samples found: optitype [2024-10-22 15:48:17,268] multiqc [INFO ] Compressing plot data [2024-10-22 15:48:17,607] multiqc [INFO ] Report : multiqc_report.html [2024-10-22 15:48:17,607] multiqc [INFO ] Data : multiqc_data [2024-10-22 15:48:17,607] multiqc [DEBUG ] Moving data file from '/scratch/tmpqdoq11zs/multiqc_data' to '/projectnb/wax-dk/max/G237_Andrea_RNAseq/Scripts/99_final_summary/G237_Andrea_RNAseq_multiqc_report/multiqc_data' [2024-10-22 15:48:18,278] multiqc [INFO ] MultiQC complete