Module	Section	Sample Name	Source
RSeQC	infer_experiment	G237_M02_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/Read_Strandness/G237_M02_Read_Strandness.txt
RSeQC	infer_experiment	G237_M02a_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/Read_Strandness/G237_M02a_Read_Strandness.txt
RSeQC	infer_experiment	G237_M03_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/Read_Strandness/G237_M03_Read_Strandness.txt
RSeQC	infer_experiment	G237_M03a_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/Read_Strandness/G237_M03a_Read_Strandness.txt
RSeQC	infer_experiment	G237_M01_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/Read_Strandness/G237_M01_Read_Strandness.txt
RSeQC	infer_experiment	G237_M04_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/Read_Strandness/G237_M04_Read_Strandness.txt
RSeQC	infer_experiment	G237_M01a_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/Read_Strandness/G237_M01a_Read_Strandness.txt
RSeQC	infer_experiment	G237_M04a_Read_Strandness	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/Read_Strandness/G237_M04a_Read_Strandness.txt
featureCounts	all_sections	G237_M02_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M02_featureCounts.out.summary
featureCounts	all_sections	G237_M02a_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M02a_featureCounts.out.summary
featureCounts	all_sections	G237_M03_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M03_featureCounts.out.summary
featureCounts	all_sections	G237_M03a_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M03a_featureCounts.out.summary
featureCounts	all_sections	G237_M01_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M01_featureCounts.out.summary
featureCounts	all_sections	G237_M04_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M04_featureCounts.out.summary
featureCounts	all_sections	G237_M01a_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M01a_featureCounts.out.summary
featureCounts	all_sections	G237_M04a_sorted	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G237_M04a_featureCounts.out.summary
Samtools	flagstat	G237_M02_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/aligner/G237_M02_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M02_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/aligner/G237_M02_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M02_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/aligner/G237_M02_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M02a_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/aligner/G237_M02a_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M02a_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/aligner/G237_M02a_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M02a_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/aligner/G237_M02a_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M03_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/aligner/G237_M03_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M03_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/aligner/G237_M03_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M03_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/aligner/G237_M03_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M03a_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/aligner/G237_M03a_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M03a_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/aligner/G237_M03a_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M03a_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/aligner/G237_M03a_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M01_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/aligner/G237_M01_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M01_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/aligner/G237_M01_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M01_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/aligner/G237_M01_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M04_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/aligner/G237_M04_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M04_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/aligner/G237_M04_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M04_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/aligner/G237_M04_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M01a_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/aligner/G237_M01a_statistics_for_primary_unique_reads.txt
Samtools	flagstat	G237_M01a_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/aligner/G237_M01a_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M01a_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/aligner/G237_M01a_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M04a_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/aligner/G237_M04a_statistics_for_all_accepted_reads.txt
Samtools	flagstat	G237_M04a_statistics_for_primary_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/aligner/G237_M04a_statistics_for_primary_reads.txt
Samtools	flagstat	G237_M04a_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/aligner/G237_M04a_statistics_for_primary_unique_reads.txt
STAR	SummaryLog	G237_M02_G237_M02	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/aligner/G237_M02_G237_M02_Log.final.out
STAR	SummaryLog	G237_M02a_G237_M02a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/aligner/G237_M02a_G237_M02a_Log.final.out
STAR	SummaryLog	G237_M03_G237_M03	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/aligner/G237_M03_G237_M03_Log.final.out
STAR	SummaryLog	G237_M03a_G237_M03a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/aligner/G237_M03a_G237_M03a_Log.final.out
STAR	SummaryLog	G237_M01_G237_M01	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/aligner/G237_M01_G237_M01_Log.final.out
STAR	SummaryLog	G237_M04_G237_M04	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/aligner/G237_M04_G237_M04_Log.final.out
STAR	SummaryLog	G237_M01a_G237_M01a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/aligner/G237_M01a_G237_M01a_Log.final.out
STAR	SummaryLog	G237_M04a_G237_M04a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/aligner/G237_M04a_G237_M04a_Log.final.out
STAR	ReadsPerGene	G237_M02	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02/aligner/G237_M02_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M02a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M02a/aligner/G237_M02a_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M03	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03/aligner/G237_M03_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M03a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M03a/aligner/G237_M03a_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M01	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01/aligner/G237_M01_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M04	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04/aligner/G237_M04_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M01a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M01a/aligner/G237_M01a_ReadsPerGene.out.tab
STAR	ReadsPerGene	G237_M04a	/projectnb/wax-dk/max/G237_Andrea_RNAseq/SAMPLES/G237_M04a/aligner/G237_M04a_ReadsPerGene.out.tab
fastp	all_sections	G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M01_FASTP/fastp.json
fastp	all_sections	G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M04a_FASTP/fastp.json
fastp	all_sections	G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M03a_FASTP/fastp.json
fastp	all_sections	G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M02_FASTP/fastp.json
FastQC	all_sections	G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M04_FASTQC/G237_M04_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip
FastQC	all_sections	G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M04_FASTQC/G237_M04_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip
FastQC	all_sections	G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M02_FASTQC/G237_M02_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip
FastQC	all_sections	G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M02_FASTQC/G237_M02_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip
FastQC	all_sections	G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M03_FASTQC/G237_M03_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip
FastQC	all_sections	G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M03_FASTQC/G237_M03_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip
FastQC	all_sections	G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M01a_FASTQC/G237_M01_CKDL240034113-1A_22VLHGLT3_L7_2_fastqc.zip
FastQC	all_sections	G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1	/projectnb2/wax-dk/max/G237_Andrea_RNAseq/Scripts/03_FASTQC/Job_Summary/G237_M01a_FASTQC/G237_M01_CKDL240034113-1A_22VLHGLT3_L7_1_fastqc.zip