[2024-11-15 10:27:25,625] multiqc [DEBUG ] This is MultiQC v1.11 [2024-11-15 10:27:25,626] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-11-15 10:27:25,626] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-11-15 10:27:25,626] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-11-15 10:27:25,629] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-11-15 10:27:25,629] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-11-15 10:27:25,629] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2024-11-15 10:27:25,629] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G238_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/06_CollectMetrics/ [2024-11-15 10:27:26,319] multiqc [WARNING] MultiQC Version v1.25.1 now available! [2024-11-15 10:27:26,320] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G238_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/06_CollectMetrics/ [2024-11-15 10:27:26,320] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G238_RNASEQ/Scripts/99_final_summary/G238_RNASEQ_multiqc_report [2024-11-15 10:27:26,320] multiqc [DEBUG ] Template : default [2024-11-15 10:27:26,320] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-11-15 10:27:26,321] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-11-15 10:27:26,321] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpuf1t2lzl [2024-11-15 10:27:26,759] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G238_RNASEQ/SAMPLES [2024-11-15 10:27:26,759] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/03_FASTQC [2024-11-15 10:27:26,759] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G238_RNASEQ/Scripts/06_CollectMetrics [2024-11-15 10:27:26,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M07_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:26,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M07_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:27,037] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,048] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,048] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:27,049] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M07_SJ.out.tab [2024-11-15 10:27:29,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M07_primary_unique.bam.bai [2024-11-15 10:27:29,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M07_primary_unique.bam [2024-11-15 10:27:29,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M07_marked_dup_metrics.txt [2024-11-15 10:27:29,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M07_marked_dup_metrics.txt [2024-11-15 10:27:29,365] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M07_marked_dup_metrics.txt [2024-11-15 10:27:29,365] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M07_marked_dup_metrics.txt [2024-11-15 10:27:29,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M07_marked_dup_metrics.txt [2024-11-15 10:27:29,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:29,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:29,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:29,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:29,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:29,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M07_hist.pdf [2024-11-15 10:27:29,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,467] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,473] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:29,497] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,385] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:30,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M07_featureCounts.out [2024-11-15 10:27:31,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:31,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:31,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M07_metrics [2024-11-15 10:27:31,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:31,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:31,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_primary_unique.bam.bai [2024-11-15 10:27:31,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:31,422] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M03_SJ.out.tab [2024-11-15 10:27:33,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_primary_unique.bam [2024-11-15 10:27:33,724] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_marked_dup_metrics.txt [2024-11-15 10:27:33,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_marked_dup_metrics.txt [2024-11-15 10:27:33,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_marked_dup_metrics.txt [2024-11-15 10:27:33,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:33,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:33,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:33,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:33,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:33,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M03_hist.pdf [2024-11-15 10:27:33,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,827] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,827] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,828] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,828] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:33,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:34,763] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M03_featureCounts.out [2024-11-15 10:27:35,645] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:35,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:35,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M03_metrics [2024-11-15 10:27:35,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M06_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:35,698] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M06_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:35,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M06_primary_unique.bam [2024-11-15 10:27:35,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:35,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M06_SJ.out.tab [2024-11-15 10:27:38,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M06_primary_unique.bam.bai [2024-11-15 10:27:38,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M06_marked_dup_metrics.txt [2024-11-15 10:27:38,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M06_marked_dup_metrics.txt [2024-11-15 10:27:38,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M06_marked_dup_metrics.txt [2024-11-15 10:27:38,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M06_marked_dup_metrics.txt [2024-11-15 10:27:38,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M06_marked_dup_metrics.txt [2024-11-15 10:27:38,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:38,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:38,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:38,237] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:38,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:38,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M06_hist.pdf [2024-11-15 10:27:38,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,296] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,296] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,296] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,296] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:38,317] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,189] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,190] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:39,210] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M06_featureCounts.out [2024-11-15 10:27:40,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:40,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:40,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M06_metrics [2024-11-15 10:27:40,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M09_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:40,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M09_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:40,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,176] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,176] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,176] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,176] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,177] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,177] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,177] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,177] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:40,177] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M09_SJ.out.tab [2024-11-15 10:27:42,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M09_primary_unique.bam.bai [2024-11-15 10:27:42,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M09_primary_unique.bam [2024-11-15 10:27:42,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M09_marked_dup_metrics.txt [2024-11-15 10:27:42,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M09_marked_dup_metrics.txt [2024-11-15 10:27:42,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M09_marked_dup_metrics.txt [2024-11-15 10:27:42,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:42,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:42,574] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:42,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:42,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:42,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M09_hist.pdf [2024-11-15 10:27:42,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,647] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,647] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:42,667] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:43,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M09_featureCounts.out [2024-11-15 10:27:44,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:44,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:44,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M09_metrics [2024-11-15 10:27:44,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:44,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:44,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:44,509] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M02_SJ.out.tab [2024-11-15 10:27:46,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_primary_unique.bam.bai [2024-11-15 10:27:46,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_primary_unique.bam [2024-11-15 10:27:46,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-11-15 10:27:46,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-11-15 10:27:46,899] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-11-15 10:27:46,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-11-15 10:27:46,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_marked_dup_metrics.txt [2024-11-15 10:27:46,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:46,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:46,930] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:46,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:46,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:46,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M02_hist.pdf [2024-11-15 10:27:46,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:46,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,899] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,904] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,904] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,905] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,905] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,905] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,905] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,905] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:47,927] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M02_featureCounts.out [2024-11-15 10:27:48,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:48,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:48,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M02_metrics [2024-11-15 10:27:48,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:48,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:48,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_primary_unique.bam.bai [2024-11-15 10:27:48,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_primary_unique.bam [2024-11-15 10:27:48,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,970] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,970] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:48,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M05_SJ.out.tab [2024-11-15 10:27:51,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_marked_dup_metrics.txt [2024-11-15 10:27:51,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_marked_dup_metrics.txt [2024-11-15 10:27:51,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_marked_dup_metrics.txt [2024-11-15 10:27:51,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M05_hist.pdf [2024-11-15 10:27:51,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:51,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:51,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:51,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:51,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:51,482] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,485] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:51,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,413] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,421] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:52,442] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M05_featureCounts.out [2024-11-15 10:27:53,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:53,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:53,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M05_metrics [2024-11-15 10:27:53,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M08_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:53,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M08_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:53,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:53,440] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M08_SJ.out.tab [2024-11-15 10:27:55,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M08_primary_unique.bam.bai [2024-11-15 10:27:55,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M08_primary_unique.bam [2024-11-15 10:27:55,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M08_marked_dup_metrics.txt [2024-11-15 10:27:55,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M08_marked_dup_metrics.txt [2024-11-15 10:27:55,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M08_marked_dup_metrics.txt [2024-11-15 10:27:55,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M08_marked_dup_metrics.txt [2024-11-15 10:27:55,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M08_marked_dup_metrics.txt [2024-11-15 10:27:55,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M08_hist.pdf [2024-11-15 10:27:55,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:55,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:55,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:55,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:55,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:55,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,977] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:55,998] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,884] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:56,908] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M08_featureCounts.out [2024-11-15 10:27:57,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:57,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:57,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M08_metrics [2024-11-15 10:27:57,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:27:57,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:27:57,857] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:27:57,866] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M01_SJ.out.tab [2024-11-15 10:28:00,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_primary_unique.bam [2024-11-15 10:28:00,311] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_primary_unique.bam.bai [2024-11-15 10:28:00,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-11-15 10:28:00,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-11-15 10:28:00,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-11-15 10:28:00,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-11-15 10:28:00,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_marked_dup_metrics.txt [2024-11-15 10:28:00,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:00,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:00,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:00,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:00,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:00,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M01_hist.pdf [2024-11-15 10:28:00,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,431] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:00,451] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,326] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:01,358] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M01_featureCounts.out [2024-11-15 10:28:02,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:02,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:02,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M01_metrics [2024-11-15 10:28:02,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:28:02,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:28:02,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_primary_unique.bam.bai [2024-11-15 10:28:02,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,298] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:02,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M04_SJ.out.tab [2024-11-15 10:28:04,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_primary_unique.bam [2024-11-15 10:28:04,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_marked_dup_metrics.txt [2024-11-15 10:28:04,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_marked_dup_metrics.txt [2024-11-15 10:28:04,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_marked_dup_metrics.txt [2024-11-15 10:28:04,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M04_hist.pdf [2024-11-15 10:28:04,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:04,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:04,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:04,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:04,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:04,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,791] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:04,813] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,713] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,713] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:05,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M04_featureCounts.out [2024-11-15 10:28:06,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:06,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:06,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M04_metrics [2024-11-15 10:28:06,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M11_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:28:06,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M11_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:28:06,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M11_primary_unique.bam.bai [2024-11-15 10:28:06,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:06,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M11_SJ.out.tab [2024-11-15 10:28:09,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M11_primary_unique.bam [2024-11-15 10:28:09,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M11_marked_dup_metrics.txt [2024-11-15 10:28:09,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M11_marked_dup_metrics.txt [2024-11-15 10:28:09,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M11_marked_dup_metrics.txt [2024-11-15 10:28:09,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:09,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:09,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:09,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:09,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:09,134] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M11_hist.pdf [2024-11-15 10:28:09,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,158] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,163] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:09,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,083] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,083] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,083] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,084] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,084] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,084] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,084] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,110] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G238_M11_featureCounts.out [2024-11-15 10:28:10,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:10,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:10,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M11_metrics [2024-11-15 10:28:11,030] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M10_CKDL240037416-1A_22TFMNLT3_L7_2.fq.gz [2024-11-15 10:28:11,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G238_M10_CKDL240037416-1A_22TFMNLT3_L7_1.fq.gz [2024-11-15 10:28:11,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,109] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,110] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,110] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,110] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,110] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G238_M10_SJ.out.tab [2024-11-15 10:28:11,110] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern 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Step_06_G238_RNASEQ_G238_M11.o1105193 [2024-11-15 10:28:20,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M11.o1105193 [2024-11-15 10:28:20,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M10.o1105192 [2024-11-15 10:28:20,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M10.o1105192 [2024-11-15 10:28:20,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M10.o1105192 [2024-11-15 10:28:20,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M10.o1105192 [2024-11-15 10:28:20,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M10.o1105192 [2024-11-15 10:28:20,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M03.o1105185 [2024-11-15 10:28:20,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M03.o1105185 [2024-11-15 10:28:20,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M03.o1105185 [2024-11-15 10:28:20,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M03.o1105185 [2024-11-15 10:28:20,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M03.o1105185 [2024-11-15 10:28:20,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M05.o1105187 [2024-11-15 10:28:20,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M05.o1105187 [2024-11-15 10:28:20,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M05.o1105187 [2024-11-15 10:28:20,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M05.o1105187 [2024-11-15 10:28:20,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M05.o1105187 [2024-11-15 10:28:20,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M07.o1105189 [2024-11-15 10:28:20,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M07.o1105189 [2024-11-15 10:28:20,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M07.o1105189 [2024-11-15 10:28:20,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M07.o1105189 [2024-11-15 10:28:20,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G238_RNASEQ_G238_M07.o1105189 [2024-11-15 10:28:20,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-15 10:28:20,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-15 10:28:20,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-15 10:28:20,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-15 10:28:20,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-11-15 10:28:20,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:20,272] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-11-15 10:28:21,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-15 10:28:21,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-15 10:28:21,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-15 10:28:21,045] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-15 10:28:21,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-15 10:28:21,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-15 10:28:21,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-15 10:28:21,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-15 10:28:21,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-15 10:28:21,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-15 10:28:25,052] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-11-15 10:28:25,073] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-11-15 10:28:25,076] multiqc [DEBUG ] No samples found: custom_content [2024-11-15 10:28:25,086] multiqc [DEBUG ] No samples found: ccs [2024-11-15 10:28:25,128] multiqc [DEBUG ] No samples found: ngsderive [2024-11-15 10:28:25,139] multiqc [DEBUG ] No samples found: purple [2024-11-15 10:28:25,146] multiqc [DEBUG ] No samples found: conpair [2024-11-15 10:28:25,189] multiqc [DEBUG ] No samples found: lima [2024-11-15 10:28:25,225] multiqc [DEBUG ] No samples found: peddy [2024-11-15 10:28:25,260] multiqc [DEBUG ] No samples found: somalier [2024-11-15 10:28:25,314] multiqc [DEBUG ] No samples found: methylQA [2024-11-15 10:28:25,360] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-11-15 10:28:25,360] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-11-15 10:28:25,360] multiqc [DEBUG ] No samples found: mosdepth [2024-11-15 10:28:25,369] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-11-15 10:28:25,392] multiqc [DEBUG ] No samples found: qualimap [2024-11-15 10:28:25,434] multiqc [DEBUG ] No samples found: preseq [2024-11-15 10:28:25,452] multiqc [DEBUG ] No samples found: quast [2024-11-15 10:28:25,487] multiqc [DEBUG ] No samples found: qorts [2024-11-15 10:28:25,517] multiqc [DEBUG ] No samples found: rna_seqc [2024-11-15 10:28:25,544] multiqc [DEBUG ] No samples found: rockhopper [2024-11-15 10:28:25,573] multiqc [DEBUG ] No samples found: rsem [2024-11-15 10:28:25,617] multiqc.modules.rseqc.rseqc [INFO ] Found 11 infer_experiment reports [2024-11-15 10:28:25,630] multiqc [DEBUG ] No samples found: busco [2024-11-15 10:28:25,639] multiqc [DEBUG ] No samples found: bustools [2024-11-15 10:28:25,677] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-11-15 10:28:25,711] multiqc [DEBUG ] No samples found: gffcompare [2024-11-15 10:28:25,721] multiqc [DEBUG ] No samples found: disambiguate [2024-11-15 10:28:25,755] multiqc [DEBUG ] No samples found: supernova [2024-11-15 10:28:25,819] multiqc [DEBUG ] No samples found: deeptools [2024-11-15 10:28:25,849] multiqc [DEBUG ] No samples found: sargasso [2024-11-15 10:28:25,875] multiqc [DEBUG ] No samples found: verifybamid [2024-11-15 10:28:25,943] multiqc [DEBUG ] No samples found: mirtrace [2024-11-15 10:28:26,006] multiqc [DEBUG ] No samples found: happy [2024-11-15 10:28:26,045] multiqc [DEBUG ] No samples found: mirtop [2024-11-15 10:28:26,076] multiqc [DEBUG ] No samples found: sambamba [2024-11-15 10:28:26,098] multiqc [DEBUG ] No samples found: homer [2024-11-15 10:28:26,117] multiqc [DEBUG ] No samples found: hops [2024-11-15 10:28:26,138] multiqc [DEBUG ] No samples found: macs2 [2024-11-15 10:28:26,146] multiqc [DEBUG ] No samples found: theta2 [2024-11-15 10:28:26,177] multiqc [DEBUG ] No samples found: snpeff [2024-11-15 10:28:26,207] multiqc [DEBUG ] No samples found: gatk [2024-11-15 10:28:26,216] multiqc [DEBUG ] No samples found: htseq [2024-11-15 10:28:26,225] multiqc [DEBUG ] No samples found: bcftools [2024-11-15 10:28:26,245] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M07_sorted [2024-11-15 10:28:26,246] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M03_sorted [2024-11-15 10:28:26,247] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M06_sorted [2024-11-15 10:28:26,247] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M09_sorted [2024-11-15 10:28:26,248] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M02_sorted [2024-11-15 10:28:26,249] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M05_sorted [2024-11-15 10:28:26,250] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M08_sorted [2024-11-15 10:28:26,251] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M01_sorted [2024-11-15 10:28:26,252] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M04_sorted [2024-11-15 10:28:26,253] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M11_sorted [2024-11-15 10:28:26,253] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G238_M10_sorted [2024-11-15 10:28:26,254] multiqc.modules.featureCounts.feature_counts [INFO ] Found 11 reports [2024-11-15 10:28:26,321] multiqc [DEBUG ] No samples found: fgbio [2024-11-15 10:28:26,426] multiqc [DEBUG ] No samples found: dragen [2024-11-15 10:28:26,448] multiqc [DEBUG ] No samples found: dedup [2024-11-15 10:28:26,475] multiqc [DEBUG ] No samples found: damageprofiler [2024-11-15 10:28:26,762] multiqc [DEBUG ] No samples found: biobambam2 [2024-11-15 10:28:26,780] multiqc [DEBUG ] No samples found: jcvi [2024-11-15 10:28:26,787] multiqc [DEBUG ] No samples found: mtnucratio [2024-11-15 10:28:26,905] multiqc.modules.picard.picard [INFO ] Found 11 InsertSizeMetrics reports [2024-11-15 10:28:26,910] multiqc.modules.picard.picard [INFO ] Found 11 MarkDuplicates reports [2024-11-15 10:28:26,921] multiqc.modules.picard.picard [INFO ] Found 11 RnaSeqMetrics reports [2024-11-15 10:28:26,950] multiqc [DEBUG ] No samples found: vep [2024-11-15 10:28:26,985] multiqc [DEBUG ] No samples found: sentieon [2024-11-15 10:28:27,032] multiqc [DEBUG ] No samples found: prokka [2024-11-15 10:28:27,067] multiqc [DEBUG ] No samples found: qc3C [2024-11-15 10:28:27,101] multiqc [DEBUG ] No samples found: nanostat [2024-11-15 10:28:27,110] multiqc [DEBUG ] No samples found: samblaster [2024-11-15 10:28:27,212] multiqc.modules.samtools.samtools [INFO ] Found 33 flagstat reports [2024-11-15 10:28:27,242] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-11-15 10:28:27,249] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-11-15 10:28:27,258] multiqc [DEBUG ] No samples found: bamtools [2024-11-15 10:28:27,264] multiqc [DEBUG ] No samples found: jellyfish [2024-11-15 10:28:27,273] multiqc [DEBUG ] No samples found: vcftools [2024-11-15 10:28:27,280] multiqc [DEBUG ] No samples found: longranger [2024-11-15 10:28:27,313] multiqc [DEBUG ] No samples found: stacks [2024-11-15 10:28:27,326] multiqc [DEBUG ] No samples found: varscan2 [2024-11-15 10:28:27,366] multiqc [DEBUG ] No samples found: snippy [2024-11-15 10:28:27,447] multiqc [DEBUG ] No samples found: bbmap [2024-11-15 10:28:27,467] multiqc [DEBUG ] No samples found: bismark [2024-11-15 10:28:27,502] multiqc [DEBUG ] No samples found: biscuit [2024-11-15 10:28:27,526] multiqc [DEBUG ] No samples found: hicexplorer [2024-11-15 10:28:27,556] multiqc [DEBUG ] No samples found: hicup [2024-11-15 10:28:27,574] multiqc [DEBUG ] No samples found: hicpro [2024-11-15 10:28:27,583] multiqc [DEBUG ] No samples found: salmon [2024-11-15 10:28:27,610] multiqc [DEBUG ] No samples found: kallisto [2024-11-15 10:28:27,671] multiqc [DEBUG ] No samples found: slamdunk [2024-11-15 10:28:28,868] multiqc.modules.star.star [INFO ] Found 11 reports and 11 gene count files [2024-11-15 10:28:28,879] multiqc [DEBUG ] No samples found: hisat2 [2024-11-15 10:28:28,915] multiqc [DEBUG ] No samples found: tophat [2024-11-15 10:28:28,939] multiqc [DEBUG ] No samples found: bowtie2 [2024-11-15 10:28:28,949] multiqc [DEBUG ] No samples found: bowtie1 [2024-11-15 10:28:28,977] multiqc [DEBUG ] No samples found: snpsplit [2024-11-15 10:28:29,017] multiqc [DEBUG ] No samples found: odgi [2024-11-15 10:28:29,063] multiqc [DEBUG ] No samples found: pangolin [2024-11-15 10:28:29,072] multiqc [DEBUG ] No samples found: kat [2024-11-15 10:28:29,082] multiqc [DEBUG ] No samples found: leehom [2024-11-15 10:28:29,123] multiqc [DEBUG ] No samples found: adapterRemoval [2024-11-15 10:28:29,132] multiqc [DEBUG ] No samples found: clipandmerge [2024-11-15 10:28:29,156] multiqc [DEBUG ] No samples found: cutadapt [2024-11-15 10:28:29,165] multiqc [DEBUG ] No samples found: flexbar [2024-11-15 10:28:29,173] multiqc [DEBUG ] No samples found: kaiju [2024-11-15 10:28:29,197] multiqc [DEBUG ] No samples found: kraken [2024-11-15 10:28:29,221] multiqc [DEBUG ] No samples found: malt [2024-11-15 10:28:29,256] multiqc [DEBUG ] No samples found: trimmomatic [2024-11-15 10:28:29,265] multiqc [DEBUG ] No samples found: sickle [2024-11-15 10:28:29,300] multiqc [DEBUG ] No samples found: skewer [2024-11-15 10:28:29,309] multiqc [DEBUG ] No samples found: sortmerna [2024-11-15 10:28:29,318] multiqc [DEBUG ] No samples found: biobloomtools [2024-11-15 10:28:29,339] multiqc [DEBUG ] No samples found: fastq_screen [2024-11-15 10:28:29,374] multiqc [DEBUG ] No samples found: afterqc [2024-11-15 10:28:29,436] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,464] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,488] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,511] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,535] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,553] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,569] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,586] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,601] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,615] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,644] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-15 10:28:29,645] multiqc.modules.fastp.fastp [INFO ] Found 11 reports [2024-11-15 10:28:31,415] multiqc.modules.fastqc.fastqc [INFO ] Found 22 reports [2024-11-15 10:28:31,417] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2024-11-15 10:28:31,761] multiqc [DEBUG ] No samples found: pychopper [2024-11-15 10:28:31,779] multiqc [DEBUG ] No samples found: pycoqc [2024-11-15 10:28:31,803] multiqc [DEBUG ] No samples found: minionqc [2024-11-15 10:28:31,823] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-11-15 10:28:31,856] multiqc [DEBUG ] No samples found: clusterflow [2024-11-15 10:28:31,890] multiqc [DEBUG ] No samples found: bcl2fastq [2024-11-15 10:28:31,913] multiqc [DEBUG ] No samples found: bclconvert [2024-11-15 10:28:31,930] multiqc [DEBUG ] No samples found: interop [2024-11-15 10:28:31,957] multiqc [DEBUG ] No samples found: ivar [2024-11-15 10:28:31,991] multiqc [DEBUG ] No samples found: flash [2024-11-15 10:28:32,045] multiqc [DEBUG ] No samples found: seqyclean [2024-11-15 10:28:32,055] multiqc [DEBUG ] No samples found: optitype [2024-11-15 10:28:32,130] multiqc [INFO ] Compressing plot data [2024-11-15 10:28:33,481] multiqc [INFO ] Report : multiqc_report.html [2024-11-15 10:28:33,481] multiqc [INFO ] Data : multiqc_data [2024-11-15 10:28:33,481] multiqc [DEBUG ] Moving data file from '/scratch/tmpuf1t2lzl/multiqc_data' to '/projectnb/wax-dk/max/G238_RNASEQ/Scripts/99_final_summary/G238_RNASEQ_multiqc_report/multiqc_data' [2024-11-15 10:28:34,191] multiqc [INFO ] MultiQC complete