[2024-11-20 09:08:24,862] multiqc [DEBUG ] This is MultiQC v1.11 [2024-11-20 09:08:24,862] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2024-11-20 09:08:24,862] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2024-11-20 09:08:24,863] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-11-20 09:08:24,864] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G239/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2024-11-20 09:08:24,864] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-11-20 09:08:24,865] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2024-11-20 09:08:24,865] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G239/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G239/SAMPLES /projectnb/wax-dk/max/G239/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G239/Scripts/06_CollectMetrics/ [2024-11-20 09:08:25,415] multiqc [WARNING] MultiQC Version v1.25.1 now available! [2024-11-20 09:08:25,415] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G239/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G239/SAMPLES /projectnb/wax-dk/max/G239/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G239/Scripts/06_CollectMetrics/ [2024-11-20 09:08:25,415] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G239/Scripts/99_final_summary/G239_multiqc_report [2024-11-20 09:08:25,415] multiqc [DEBUG ] Template : default [2024-11-20 09:08:25,415] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2024-11-20 09:08:25,416] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2024-11-20 09:08:25,417] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp346f5iri [2024-11-20 09:08:25,792] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G239/SAMPLES [2024-11-20 09:08:25,792] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G239/Scripts/03_FASTQC [2024-11-20 09:08:25,792] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G239/Scripts/06_CollectMetrics [2024-11-20 09:08:25,949] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /projectnb/wax-dk/max/G239/SAMPLES/G239_M01/tmp/multiqc_data [2024-11-20 09:08:26,217] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /projectnb/wax-dk/max/G239/Scripts/03_FASTQC/Job_Summary/multiqc_data [2024-11-20 09:08:26,356] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: /projectnb/wax-dk/max/G239/Scripts/03_FASTQC/Job_Summary.falco/G239_M01_FASTQC/multiqc_data [2024-11-20 09:08:26,515] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:26,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:26,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:26,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M37_SJ.out.tab [2024-11-20 09:08:28,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_primary_unique.bam.bai [2024-11-20 09:08:28,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_primary_unique.bam [2024-11-20 09:08:28,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-20 09:08:28,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-20 09:08:28,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-20 09:08:28,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-20 09:08:28,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_marked_dup_metrics.txt [2024-11-20 09:08:28,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M37_hist.pdf [2024-11-20 09:08:28,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:28,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:28,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:28,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:28,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:28,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,752] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,755] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,755] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,756] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:28,774] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,699] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,700] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:29,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M37_featureCounts.out [2024-11-20 09:08:30,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:30,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:30,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M37_metrics [2024-11-20 09:08:30,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:30,685] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:30,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_primary_unique.bam [2024-11-20 09:08:30,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_primary_unique.bam.bai [2024-11-20 09:08:30,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,797] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,802] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,802] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:30,803] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M39_SJ.out.tab [2024-11-20 09:08:32,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-20 09:08:32,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-20 09:08:32,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-20 09:08:32,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-20 09:08:32,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_marked_dup_metrics.txt [2024-11-20 09:08:32,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:32,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:32,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:32,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:32,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:32,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M39_hist.pdf [2024-11-20 09:08:32,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,847] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:32,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,835] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,835] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,835] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,835] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:33,857] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M39_featureCounts.out [2024-11-20 09:08:34,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:34,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:34,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M39_metrics [2024-11-20 09:08:34,832] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:34,832] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:34,892] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:34,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M28_SJ.out.tab [2024-11-20 09:08:37,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_primary_unique.bam.bai [2024-11-20 09:08:37,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_primary_unique.bam [2024-11-20 09:08:37,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-20 09:08:37,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-20 09:08:37,161] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-20 09:08:37,162] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-20 09:08:37,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_marked_dup_metrics.txt [2024-11-20 09:08:37,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:37,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:37,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:37,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:37,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:37,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M28_hist.pdf [2024-11-20 09:08:37,277] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:37,325] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:38,328] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M28_featureCounts.out [2024-11-20 09:08:39,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:39,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:39,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M28_metrics [2024-11-20 09:08:39,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:39,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:39,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_primary_unique.bam.bai [2024-11-20 09:08:39,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,404] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,405] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:39,405] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M17_SJ.out.tab [2024-11-20 09:08:41,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_primary_unique.bam [2024-11-20 09:08:41,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-20 09:08:41,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-20 09:08:41,274] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-20 09:08:41,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-20 09:08:41,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_marked_dup_metrics.txt [2024-11-20 09:08:41,326] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:41,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:41,330] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:41,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:41,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:41,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M17_hist.pdf [2024-11-20 09:08:41,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,437] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:41,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:42,472] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M17_featureCounts.out [2024-11-20 09:08:43,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:43,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:43,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M17_metrics [2024-11-20 09:08:43,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:43,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:43,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_primary_unique.bam.bai [2024-11-20 09:08:43,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:43,544] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M34_SJ.out.tab [2024-11-20 09:08:45,779] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_primary_unique.bam [2024-11-20 09:08:45,791] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-20 09:08:45,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-20 09:08:45,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-20 09:08:45,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-20 09:08:45,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_marked_dup_metrics.txt [2024-11-20 09:08:45,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:45,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:45,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:45,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:45,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:45,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M34_hist.pdf [2024-11-20 09:08:45,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,970] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:45,995] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,977] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:46,997] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M34_featureCounts.out [2024-11-20 09:08:47,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:47,986] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:47,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M34_metrics [2024-11-20 09:08:48,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:48,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:48,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,117] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:48,123] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M19_SJ.out.tab [2024-11-20 09:08:50,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_primary_unique.bam [2024-11-20 09:08:50,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_primary_unique.bam.bai [2024-11-20 09:08:50,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-20 09:08:50,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-20 09:08:50,141] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-20 09:08:50,141] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-20 09:08:50,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_marked_dup_metrics.txt [2024-11-20 09:08:50,162] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M19_hist.pdf [2024-11-20 09:08:50,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:50,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:50,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:50,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:50,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:50,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,267] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:50,288] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,219] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:51,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M19_featureCounts.out [2024-11-20 09:08:52,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:52,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:52,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M19_metrics [2024-11-20 09:08:52,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:52,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:52,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_primary_unique.bam [2024-11-20 09:08:52,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:52,283] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M36_SJ.out.tab [2024-11-20 09:08:54,412] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_primary_unique.bam.bai [2024-11-20 09:08:54,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-20 09:08:54,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-20 09:08:54,497] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-20 09:08:54,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-20 09:08:54,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_marked_dup_metrics.txt [2024-11-20 09:08:54,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M36_hist.pdf [2024-11-20 09:08:54,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:54,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:54,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:54,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:54,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:54,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,649] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,654] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:54,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,618] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:55,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M36_featureCounts.out [2024-11-20 09:08:56,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:56,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:56,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M36_metrics [2024-11-20 09:08:56,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:08:56,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:08:56,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_primary_unique.bam [2024-11-20 09:08:56,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,652] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,657] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:56,658] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M06_SJ.out.tab [2024-11-20 09:08:58,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_primary_unique.bam.bai [2024-11-20 09:08:58,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-20 09:08:58,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-20 09:08:58,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-20 09:08:58,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-20 09:08:58,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_marked_dup_metrics.txt [2024-11-20 09:08:58,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M06_hist.pdf [2024-11-20 09:08:58,734] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:08:58,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:08:58,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:08:58,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:08:58,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:08:58,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,823] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,823] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,827] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:58,848] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,762] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:08:59,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M06_featureCounts.out [2024-11-20 09:09:00,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:09:00,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:09:00,652] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M06_metrics [2024-11-20 09:09:00,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:00,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:00,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_primary_unique.bam [2024-11-20 09:09:00,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_primary_unique.bam.bai [2024-11-20 09:09:00,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,779] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,785] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,786] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:00,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M23_SJ.out.tab [2024-11-20 09:09:02,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-20 09:09:02,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-20 09:09:02,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-20 09:09:02,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-20 09:09:02,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_marked_dup_metrics.txt [2024-11-20 09:09:02,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M23_hist.pdf [2024-11-20 09:09:02,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:02,837] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:02,837] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:02,837] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:02,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:02,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,918] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:02,937] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,865] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,870] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:03,891] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M23_featureCounts.out [2024-11-20 09:09:04,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:04,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:04,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M23_metrics [2024-11-20 09:09:04,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:04,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:04,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_primary_unique.bam [2024-11-20 09:09:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_primary_unique.bam.bai [2024-11-20 09:09:04,927] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,930] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:04,935] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M40_SJ.out.tab [2024-11-20 09:09:06,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-20 09:09:06,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-20 09:09:06,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-20 09:09:06,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-20 09:09:06,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_marked_dup_metrics.txt [2024-11-20 09:09:06,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:06,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:06,772] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:06,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:06,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:06,832] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M40_hist.pdf [2024-11-20 09:09:06,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:06,927] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,835] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:07,859] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M40_featureCounts.out [2024-11-20 09:09:08,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:08,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:08,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M40_metrics [2024-11-20 09:09:08,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:08,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:08,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_primary_unique.bam [2024-11-20 09:09:08,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_primary_unique.bam.bai [2024-11-20 09:09:08,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,899] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,902] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:08,903] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M08_SJ.out.tab [2024-11-20 09:09:10,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-20 09:09:10,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-20 09:09:10,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-20 09:09:10,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-20 09:09:10,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_marked_dup_metrics.txt [2024-11-20 09:09:10,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:10,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:10,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:10,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:10,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:11,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M08_hist.pdf [2024-11-20 09:09:11,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,099] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,099] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,102] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,102] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,102] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:11,133] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,082] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,082] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,085] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,105] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M08_featureCounts.out [2024-11-20 09:09:12,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:12,999] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:13,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M08_metrics [2024-11-20 09:09:13,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:13,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:13,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,154] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,154] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:13,155] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M25_SJ.out.tab [2024-11-20 09:09:15,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_primary_unique.bam [2024-11-20 09:09:15,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_primary_unique.bam.bai [2024-11-20 09:09:15,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-20 09:09:15,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-20 09:09:15,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-20 09:09:15,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-20 09:09:15,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_marked_dup_metrics.txt [2024-11-20 09:09:15,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M25_hist.pdf [2024-11-20 09:09:15,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:15,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:15,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:15,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:15,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:15,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:15,265] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,264] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:16,288] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M25_featureCounts.out [2024-11-20 09:09:17,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:17,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:17,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M25_metrics [2024-11-20 09:09:17,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:17,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:17,288] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:17,294] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M12_SJ.out.tab [2024-11-20 09:09:18,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_primary_unique.bam.bai [2024-11-20 09:09:18,995] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_primary_unique.bam [2024-11-20 09:09:19,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-20 09:09:19,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-20 09:09:19,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-20 09:09:19,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-20 09:09:19,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_marked_dup_metrics.txt [2024-11-20 09:09:19,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:19,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:19,047] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:19,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:19,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:19,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M12_hist.pdf [2024-11-20 09:09:19,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,135] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:19,224] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,140] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,140] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,140] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,140] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,141] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,141] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,141] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:20,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M12_featureCounts.out [2024-11-20 09:09:21,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:21,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:21,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M12_metrics [2024-11-20 09:09:21,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:21,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:21,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,141] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,146] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,146] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:21,147] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M14_SJ.out.tab [2024-11-20 09:09:23,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_primary_unique.bam [2024-11-20 09:09:23,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_primary_unique.bam.bai [2024-11-20 09:09:23,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-20 09:09:23,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-20 09:09:23,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-20 09:09:23,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-20 09:09:23,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_marked_dup_metrics.txt [2024-11-20 09:09:23,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:23,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:23,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:23,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:23,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:23,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M14_hist.pdf [2024-11-20 09:09:23,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,267] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,273] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,274] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:23,307] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,211] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,213] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,217] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:24,271] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M14_featureCounts.out [2024-11-20 09:09:25,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:25,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:25,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_metrics [2024-11-20 09:09:25,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:25,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:25,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:25,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M31_SJ.out.tab [2024-11-20 09:09:27,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_primary_unique.bam [2024-11-20 09:09:27,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_primary_unique.bam.bai [2024-11-20 09:09:27,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-20 09:09:27,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-20 09:09:27,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-20 09:09:27,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-20 09:09:27,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_marked_dup_metrics.txt [2024-11-20 09:09:27,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M31_hist.pdf [2024-11-20 09:09:27,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:27,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:27,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:27,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:27,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:27,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,367] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,368] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:27,388] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,314] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:28,340] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M31_featureCounts.out [2024-11-20 09:09:29,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:29,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:29,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M31_metrics [2024-11-20 09:09:29,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:29,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:29,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,315] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,327] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:09:29,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,512] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:09:29,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_primary_unique.bam.bai [2024-11-20 09:09:29,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,618] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,622] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,622] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,622] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,622] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,623] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:29,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M01_SJ.out.tab [2024-11-20 09:09:31,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_primary_unique.bam [2024-11-20 09:09:31,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-20 09:09:31,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-20 09:09:31,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-20 09:09:31,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-20 09:09:31,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_marked_dup_metrics.txt [2024-11-20 09:09:31,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M01_hist.pdf [2024-11-20 09:09:31,762] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:31,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:31,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:31,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:31,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:31,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,838] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:31,883] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,806] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:32,826] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M01_featureCounts.out [2024-11-20 09:09:33,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:33,740] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:33,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M01_metrics [2024-11-20 09:09:33,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:33,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:33,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,823] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,823] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,828] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,828] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:33,829] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M03_SJ.out.tab [2024-11-20 09:09:35,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_primary_unique.bam [2024-11-20 09:09:35,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_primary_unique.bam.bai [2024-11-20 09:09:35,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-20 09:09:35,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-20 09:09:35,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-20 09:09:35,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-20 09:09:35,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_marked_dup_metrics.txt [2024-11-20 09:09:35,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M03_hist.pdf [2024-11-20 09:09:35,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:35,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:35,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:35,703] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:35,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:35,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,819] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:35,846] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,754] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,758] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,758] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,758] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:36,779] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M03_featureCounts.out [2024-11-20 09:09:37,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:37,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:37,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M03_metrics [2024-11-20 09:09:37,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:37,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:37,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_primary_unique.bam [2024-11-20 09:09:37,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,766] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,766] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,766] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,767] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:37,767] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M20_SJ.out.tab [2024-11-20 09:09:39,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_primary_unique.bam.bai [2024-11-20 09:09:39,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-20 09:09:39,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-20 09:09:39,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-20 09:09:39,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-20 09:09:39,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_marked_dup_metrics.txt [2024-11-20 09:09:39,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M20_hist.pdf [2024-11-20 09:09:39,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:39,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:39,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:39,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:39,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:39,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,858] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,858] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,859] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,859] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,859] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,859] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,859] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:39,878] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,797] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:40,819] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M20_featureCounts.out [2024-11-20 09:09:41,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:41,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:41,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M20_metrics [2024-11-20 09:09:41,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:41,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:41,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_primary_unique.bam [2024-11-20 09:09:41,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:41,837] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M05_SJ.out.tab [2024-11-20 09:09:43,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_primary_unique.bam.bai [2024-11-20 09:09:43,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-20 09:09:43,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-20 09:09:43,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-20 09:09:43,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-20 09:09:43,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_marked_dup_metrics.txt [2024-11-20 09:09:43,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:43,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:43,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:43,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:43,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:43,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M05_hist.pdf [2024-11-20 09:09:43,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:43,846] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,763] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,767] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:44,789] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M05_featureCounts.out [2024-11-20 09:09:45,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:45,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:45,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M05_metrics [2024-11-20 09:09:45,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:45,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:45,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_primary_unique.bam.bai [2024-11-20 09:09:45,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_primary_unique.bam [2024-11-20 09:09:45,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,821] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:45,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M11_SJ.out.tab [2024-11-20 09:09:47,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-20 09:09:47,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-20 09:09:47,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-20 09:09:47,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-20 09:09:47,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_marked_dup_metrics.txt [2024-11-20 09:09:48,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:48,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:48,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:48,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:48,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:48,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M11_hist.pdf [2024-11-20 09:09:48,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,134] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,135] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:48,157] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:49,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M11_featureCounts.out [2024-11-20 09:09:50,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:50,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:50,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M11_metrics [2024-11-20 09:09:50,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:50,053] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:50,068] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_primary_unique.bam.bai [2024-11-20 09:09:50,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_primary_unique.bam [2024-11-20 09:09:50,153] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,156] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,161] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,161] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,161] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,161] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,162] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:50,162] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M38_SJ.out.tab [2024-11-20 09:09:52,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-20 09:09:52,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-20 09:09:52,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-20 09:09:52,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-20 09:09:52,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_marked_dup_metrics.txt [2024-11-20 09:09:52,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:52,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:52,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:52,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:52,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:52,154] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M38_hist.pdf [2024-11-20 09:09:52,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,203] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,204] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:52,226] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,145] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,148] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,152] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,153] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:53,174] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M38_featureCounts.out [2024-11-20 09:09:54,052] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:54,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:54,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M38_metrics [2024-11-20 09:09:54,090] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:54,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:54,120] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_primary_unique.bam [2024-11-20 09:09:54,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_primary_unique.bam.bai [2024-11-20 09:09:54,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:54,199] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M27_SJ.out.tab [2024-11-20 09:09:56,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-20 09:09:56,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-20 09:09:56,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-20 09:09:56,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-20 09:09:56,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_marked_dup_metrics.txt [2024-11-20 09:09:56,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:56,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:56,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:56,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:56,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:56,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M27_hist.pdf [2024-11-20 09:09:56,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,199] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:56,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:57,203] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M27_featureCounts.out [2024-11-20 09:09:58,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:58,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:58,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M27_metrics [2024-11-20 09:09:58,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:09:58,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:09:58,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_primary_unique.bam.bai [2024-11-20 09:09:58,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_primary_unique.bam [2024-11-20 09:09:58,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,246] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,251] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:09:58,252] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M29_SJ.out.tab [2024-11-20 09:10:00,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-20 09:10:00,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-20 09:10:00,308] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-20 09:10:00,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-20 09:10:00,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_marked_dup_metrics.txt [2024-11-20 09:10:00,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M29_hist.pdf [2024-11-20 09:10:00,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:00,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:00,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:00,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:00,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:00,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,466] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:00,487] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,450] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,458] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:01,479] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M29_featureCounts.out [2024-11-20 09:10:02,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:02,357] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:02,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M29_metrics [2024-11-20 09:10:02,395] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:02,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:02,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:02,455] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M16_SJ.out.tab [2024-11-20 09:10:04,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_primary_unique.bam.bai [2024-11-20 09:10:04,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_primary_unique.bam [2024-11-20 09:10:04,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-20 09:10:04,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-20 09:10:04,562] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-20 09:10:04,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-20 09:10:04,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_marked_dup_metrics.txt [2024-11-20 09:10:04,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:04,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:04,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:04,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:04,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:04,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M16_hist.pdf [2024-11-20 09:10:04,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:04,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,615] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:05,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M16_featureCounts.out [2024-11-20 09:10:06,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:06,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:06,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M16_metrics [2024-11-20 09:10:06,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:06,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:06,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:06,691] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M33_SJ.out.tab [2024-11-20 09:10:08,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_primary_unique.bam.bai [2024-11-20 09:10:08,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_primary_unique.bam [2024-11-20 09:10:08,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-20 09:10:08,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-20 09:10:08,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-20 09:10:08,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-20 09:10:08,997] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_marked_dup_metrics.txt [2024-11-20 09:10:09,020] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M33_hist.pdf [2024-11-20 09:10:09,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:09,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:09,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:09,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:09,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:09,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:09,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,119] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M33_featureCounts.out [2024-11-20 09:10:10,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:10,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:10,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M33_metrics [2024-11-20 09:10:11,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:11,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:11,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_primary_unique.bam [2024-11-20 09:10:11,139] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,141] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,145] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,146] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:11,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M18_SJ.out.tab [2024-11-20 09:10:12,757] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_primary_unique.bam.bai [2024-11-20 09:10:12,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-20 09:10:12,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-20 09:10:12,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-20 09:10:12,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-20 09:10:12,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_marked_dup_metrics.txt [2024-11-20 09:10:12,810] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:12,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:12,812] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:12,812] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:12,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:12,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M18_hist.pdf [2024-11-20 09:10:12,899] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,905] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,905] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,905] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,905] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,905] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,906] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,906] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:12,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:13,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M18_featureCounts.out [2024-11-20 09:10:14,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:14,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:14,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M18_metrics [2024-11-20 09:10:14,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:14,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:14,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_primary_unique.bam.bai [2024-11-20 09:10:14,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_primary_unique.bam [2024-11-20 09:10:14,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,887] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:14,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M35_SJ.out.tab [2024-11-20 09:10:17,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-20 09:10:17,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-20 09:10:17,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-20 09:10:17,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-20 09:10:17,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_marked_dup_metrics.txt [2024-11-20 09:10:17,053] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:17,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:17,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:17,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:17,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:17,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M35_hist.pdf [2024-11-20 09:10:17,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,145] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,145] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,145] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,145] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,145] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:17,168] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,096] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:18,148] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M35_featureCounts.out [2024-11-20 09:10:19,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:19,062] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:19,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M35_metrics [2024-11-20 09:10:19,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:19,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:19,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,169] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:19,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M22_SJ.out.tab [2024-11-20 09:10:21,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_primary_unique.bam.bai [2024-11-20 09:10:21,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_primary_unique.bam [2024-11-20 09:10:21,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-20 09:10:21,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-20 09:10:21,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-20 09:10:21,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-20 09:10:21,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_marked_dup_metrics.txt [2024-11-20 09:10:21,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M22_hist.pdf [2024-11-20 09:10:21,291] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:21,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:21,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:21,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:21,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:21,370] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,389] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:21,414] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:22,366] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M22_featureCounts.out [2024-11-20 09:10:23,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:23,261] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:23,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M22_metrics [2024-11-20 09:10:23,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:23,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:23,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_primary_unique.bam [2024-11-20 09:10:23,406] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,410] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,415] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,415] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:23,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M07_SJ.out.tab [2024-11-20 09:10:25,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_primary_unique.bam.bai [2024-11-20 09:10:25,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-20 09:10:25,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-20 09:10:25,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-20 09:10:25,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-20 09:10:25,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_marked_dup_metrics.txt [2024-11-20 09:10:25,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:25,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:25,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:25,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:25,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:25,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M07_hist.pdf [2024-11-20 09:10:25,426] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,429] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,432] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,432] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,433] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,433] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,433] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:25,462] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,401] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,406] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,406] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,406] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,406] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,406] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,407] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,407] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:26,431] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M07_featureCounts.out [2024-11-20 09:10:27,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:27,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:27,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M07_metrics [2024-11-20 09:10:27,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:27,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:27,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_primary_unique.bam.bai [2024-11-20 09:10:27,461] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,463] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,467] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,467] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:27,468] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M24_SJ.out.tab [2024-11-20 09:10:29,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_primary_unique.bam [2024-11-20 09:10:29,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-20 09:10:29,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-20 09:10:29,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-20 09:10:29,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-20 09:10:29,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_marked_dup_metrics.txt [2024-11-20 09:10:29,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:29,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:29,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:29,495] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:29,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:29,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M24_hist.pdf [2024-11-20 09:10:29,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,599] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,600] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:29,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,559] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,559] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,560] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,560] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,560] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,560] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:30,582] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M24_featureCounts.out [2024-11-20 09:10:31,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:31,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:31,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M24_metrics [2024-11-20 09:10:31,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:31,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:31,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_primary_unique.bam.bai [2024-11-20 09:10:31,619] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,622] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,622] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:31,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M09_SJ.out.tab [2024-11-20 09:10:33,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_primary_unique.bam [2024-11-20 09:10:33,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-20 09:10:33,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-20 09:10:33,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-20 09:10:33,614] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-20 09:10:33,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_marked_dup_metrics.txt [2024-11-20 09:10:33,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M09_hist.pdf [2024-11-20 09:10:33,686] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:33,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:33,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:33,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:33,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:33,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,761] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:33,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,771] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,775] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:34,796] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M09_featureCounts.out [2024-11-20 09:10:35,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:35,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:35,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M09_metrics [2024-11-20 09:10:35,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:35,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:35,810] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,816] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,816] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:35,817] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M26_SJ.out.tab [2024-11-20 09:10:37,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_primary_unique.bam.bai [2024-11-20 09:10:37,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_primary_unique.bam [2024-11-20 09:10:37,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-20 09:10:37,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-20 09:10:37,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-20 09:10:37,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-20 09:10:37,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_marked_dup_metrics.txt [2024-11-20 09:10:38,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:38,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:38,048] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:38,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:38,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:38,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M26_hist.pdf [2024-11-20 09:10:38,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,155] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,159] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,159] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,159] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,159] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,159] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,160] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:38,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:39,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M26_featureCounts.out [2024-11-20 09:10:40,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:40,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:40,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M26_metrics [2024-11-20 09:10:40,059] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:40,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:40,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_primary_unique.bam.bai [2024-11-20 09:10:40,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_primary_unique.bam [2024-11-20 09:10:40,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,172] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,172] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,172] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,173] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:40,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M13_SJ.out.tab [2024-11-20 09:10:42,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-20 09:10:42,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-20 09:10:42,017] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-20 09:10:42,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-20 09:10:42,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_marked_dup_metrics.txt [2024-11-20 09:10:42,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M13_hist.pdf [2024-11-20 09:10:42,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:42,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:42,049] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:42,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:42,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:42,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:42,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,094] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,098] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:43,125] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M13_featureCounts.out [2024-11-20 09:10:44,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:44,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:44,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M13_metrics [2024-11-20 09:10:44,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:44,069] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:44,125] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_primary_unique.bam.bai [2024-11-20 09:10:44,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_primary_unique.bam [2024-11-20 09:10:44,179] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,187] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:44,188] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M30_SJ.out.tab [2024-11-20 09:10:46,096] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-20 09:10:46,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-20 09:10:46,099] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-20 09:10:46,099] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-20 09:10:46,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_marked_dup_metrics.txt [2024-11-20 09:10:46,128] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M30_hist.pdf [2024-11-20 09:10:46,141] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:46,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:46,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:46,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:46,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:46,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,240] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:46,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,169] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,172] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:47,191] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M30_featureCounts.out [2024-11-20 09:10:48,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:48,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:48,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M30_metrics [2024-11-20 09:10:48,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:48,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:48,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_primary_unique.bam [2024-11-20 09:10:48,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:48,218] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M15_SJ.out.tab [2024-11-20 09:10:49,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_primary_unique.bam.bai [2024-11-20 09:10:49,944] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-20 09:10:49,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-20 09:10:49,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-20 09:10:49,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-20 09:10:49,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_marked_dup_metrics.txt [2024-11-20 09:10:49,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M15_hist.pdf [2024-11-20 09:10:49,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:49,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:49,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:49,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:49,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:50,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,088] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:50,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M15_featureCounts.out [2024-11-20 09:10:51,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:51,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:51,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M15_metrics [2024-11-20 09:10:51,997] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:51,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:52,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_primary_unique.bam [2024-11-20 09:10:52,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,085] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,089] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:52,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M32_SJ.out.tab [2024-11-20 09:10:53,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_primary_unique.bam.bai [2024-11-20 09:10:53,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-20 09:10:53,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-20 09:10:53,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-20 09:10:53,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-20 09:10:53,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_marked_dup_metrics.txt [2024-11-20 09:10:53,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M32_hist.pdf [2024-11-20 09:10:53,734] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:53,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:53,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:53,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:53,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:53,845] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,851] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,851] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,851] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,851] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,851] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,852] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,852] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:53,871] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:54,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M32_featureCounts.out [2024-11-20 09:10:55,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:55,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:55,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M32_metrics [2024-11-20 09:10:55,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:55,797] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:55,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_primary_unique.bam [2024-11-20 09:10:55,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_primary_unique.bam.bai [2024-11-20 09:10:55,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:55,878] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M02_SJ.out.tab [2024-11-20 09:10:57,720] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-20 09:10:57,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-20 09:10:57,723] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-20 09:10:57,723] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-20 09:10:57,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_marked_dup_metrics.txt [2024-11-20 09:10:57,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M02_hist.pdf [2024-11-20 09:10:57,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:57,755] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:57,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:57,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:57,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:57,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:57,957] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:58,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M02_featureCounts.out [2024-11-20 09:10:59,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:59,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:59,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M02_metrics [2024-11-20 09:10:59,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:10:59,848] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:10:59,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,880] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:10:59,881] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M04_SJ.out.tab [2024-11-20 09:11:01,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_primary_unique.bam [2024-11-20 09:11:01,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_primary_unique.bam.bai [2024-11-20 09:11:01,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-20 09:11:01,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-20 09:11:01,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-20 09:11:01,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-20 09:11:01,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_marked_dup_metrics.txt [2024-11-20 09:11:01,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:01,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:01,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:01,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:01,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:01,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M04_hist.pdf [2024-11-20 09:11:01,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,858] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:01,880] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,822] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,822] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,826] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,826] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,827] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:02,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M04_featureCounts.out [2024-11-20 09:11:03,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:03,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:03,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M04_metrics [2024-11-20 09:11:03,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:11:03,801] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:11:03,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_primary_unique.bam.bai [2024-11-20 09:11:03,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,912] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,912] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:03,917] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M21_SJ.out.tab [2024-11-20 09:11:05,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_primary_unique.bam [2024-11-20 09:11:05,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-20 09:11:05,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-20 09:11:05,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-20 09:11:05,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-20 09:11:05,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_marked_dup_metrics.txt [2024-11-20 09:11:05,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M21_hist.pdf [2024-11-20 09:11:05,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:05,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:05,928] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:05,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:05,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:06,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,015] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,015] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,015] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,016] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,036] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,953] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:06,976] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M21_featureCounts.out [2024-11-20 09:11:07,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:07,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:07,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M21_metrics [2024-11-20 09:11:07,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_CKDL240037415-1A_22TFMNLT3_L7_2.fq.gz [2024-11-20 09:11:07,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_CKDL240037415-1A_22TFMNLT3_L7_1.fq.gz [2024-11-20 09:11:07,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,970] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,970] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:07,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M10_SJ.out.tab [2024-11-20 09:11:10,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_primary_unique.bam [2024-11-20 09:11:10,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_primary_unique.bam.bai [2024-11-20 09:11:10,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-20 09:11:10,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-20 09:11:10,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-20 09:11:10,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-20 09:11:10,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_marked_dup_metrics.txt [2024-11-20 09:11:10,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:10,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:10,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:10,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:10,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:10,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G239_M10_hist.pdf [2024-11-20 09:11:10,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:10,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,268] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,268] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,268] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,269] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,269] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,269] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:11,294] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G239_M10_featureCounts.out [2024-11-20 09:11:12,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:12,179] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:12,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M10_metrics [2024-11-20 09:11:12,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-11-20 09:11:12,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-11-20 09:11:12,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-11-20 09:11:12,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-11-20 09:11:12,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-11-20 09:11:12,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-11-20 09:11:12,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-11-20 09:11:12,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-11-20 09:11:12,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-20 09:11:12,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-20 09:11:12,268] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-20 09:11:12,268] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-20 09:11:12,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-11-20 09:11:12,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-11-20 09:11:12,285] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-11-20 09:11:12,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M12.o1181992 [2024-11-20 09:11:12,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M12.o1181992 [2024-11-20 09:11:12,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M12.o1181992 [2024-11-20 09:11:12,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M36.o1182016 [2024-11-20 09:11:12,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M36.o1182016 [2024-11-20 09:11:12,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M36.o1182016 [2024-11-20 09:11:12,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M29.o1182009 [2024-11-20 09:11:12,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M29.o1182009 [2024-11-20 09:11:12,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M29.o1182009 [2024-11-20 09:11:12,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M20.o1182000 [2024-11-20 09:11:12,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M20.o1182000 [2024-11-20 09:11:12,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M20.o1182000 [2024-11-20 09:11:12,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M35.o1182015 [2024-11-20 09:11:12,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M35.o1182015 [2024-11-20 09:11:12,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M35.o1182015 [2024-11-20 09:11:12,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M07.o1181987 [2024-11-20 09:11:12,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M07.o1181987 [2024-11-20 09:11:12,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M07.o1181987 [2024-11-20 09:11:12,402] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G239_G239_M26.o1182006 [2024-11-20 09:11:12,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G239_G239_M26.o1182006 [2024-11-20 09:11:12,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G239_G239_M26.o1182006 [2024-11-20 09:11:12,416] multiqc [DEBUG ] File ignored by ccs/v4 because it 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because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:12,991] multiqc 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[2024-11-20 09:11:28,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:28,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:28,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:28,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:28,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: multiqc_report.html [2024-11-20 09:11:29,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:29,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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09:11:30,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:30,559] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:30,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:30,559] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:30,559] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:30,559] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2024-11-20 09:11:30,559] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 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09:11:35,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-20 09:11:35,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-20 09:11:35,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-20 09:11:35,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-20 09:11:35,437] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.html [2024-11-20 09:11:35,437] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 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limit: Step_06_G239_G239_M24.o1125208 [2024-11-20 09:11:50,382] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-20 09:11:50,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M24.o1125208 [2024-11-20 09:11:50,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-20 09:11:50,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-20 09:11:50,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-20 09:11:50,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-20 09:11:50,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M32.o1125216 [2024-11-20 09:11:50,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-20 09:11:50,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-20 09:11:50,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-20 09:11:50,474] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-20 09:11:50,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M14.o1125197 [2024-11-20 09:11:50,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-20 09:11:50,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-20 09:11:50,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-20 09:11:50,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-20 09:11:50,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M15.o1125198 [2024-11-20 09:11:50,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-20 09:11:50,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-20 09:11:50,543] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-20 09:11:50,543] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-20 09:11:50,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M39.o1125223 [2024-11-20 09:11:50,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-20 09:11:50,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-20 09:11:50,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-20 09:11:50,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-20 09:11:50,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M21.o1125205 [2024-11-20 09:11:50,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-20 09:11:50,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-20 09:11:50,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-20 09:11:50,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-20 09:11:50,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M23.o1125207 [2024-11-20 09:11:50,643] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-20 09:11:50,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-20 09:11:50,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-20 09:11:50,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-20 09:11:50,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M08.o1125191 [2024-11-20 09:11:50,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-20 09:11:50,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-20 09:11:50,683] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-20 09:11:50,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-20 09:11:50,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M11.o1125194 [2024-11-20 09:11:50,716] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-20 09:11:50,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-20 09:11:50,718] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-20 09:11:50,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-20 09:11:50,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M19.o1125202 [2024-11-20 09:11:50,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-20 09:11:50,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-20 09:11:50,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-20 09:11:50,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-20 09:11:50,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M10.o1125193 [2024-11-20 09:11:50,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-20 09:11:50,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-20 09:11:50,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-20 09:11:50,787] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-20 09:11:50,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M02.o1125182 [2024-11-20 09:11:50,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-20 09:11:50,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-20 09:11:50,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-20 09:11:50,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-20 09:11:50,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M27.o1125211 [2024-11-20 09:11:50,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-20 09:11:50,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-20 09:11:50,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-20 09:11:50,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-20 09:11:50,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M04.o1125185 [2024-11-20 09:11:50,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-20 09:11:50,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-20 09:11:50,915] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-20 09:11:50,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-20 09:11:50,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M30.o1125214 [2024-11-20 09:11:50,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-20 09:11:50,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-20 09:11:50,961] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-20 09:11:50,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-20 09:11:50,964] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-20 09:11:50,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M26.o1125210 [2024-11-20 09:11:51,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-20 09:11:51,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-20 09:11:51,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-20 09:11:51,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-20 09:11:51,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M17.o1125200 [2024-11-20 09:11:51,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-20 09:11:51,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-20 09:11:51,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-20 09:11:51,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-20 09:11:51,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M20.o1125204 [2024-11-20 09:11:51,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-20 09:11:51,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-20 09:11:51,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-20 09:11:51,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-20 09:11:51,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M31.o1125215 [2024-11-20 09:11:51,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-20 09:11:51,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-20 09:11:51,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-20 09:11:51,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-20 09:11:51,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M12.o1125195 [2024-11-20 09:11:51,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-20 09:11:51,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-20 09:11:51,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-20 09:11:51,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-20 09:11:51,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M09.o1125192 [2024-11-20 09:11:51,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-20 09:11:51,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-20 09:11:51,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-20 09:11:51,173] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-20 09:11:51,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M06.o1125189 [2024-11-20 09:11:51,204] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-20 09:11:51,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-20 09:11:51,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-20 09:11:51,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-20 09:11:51,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M25.o1125209 [2024-11-20 09:11:51,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-20 09:11:51,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-20 09:11:51,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-20 09:11:51,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-20 09:11:51,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M29.o1125213 [2024-11-20 09:11:51,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-20 09:11:51,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-20 09:11:51,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-20 09:11:51,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-20 09:11:51,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M05.o1125187 [2024-11-20 09:11:51,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-20 09:11:51,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-20 09:11:51,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-20 09:11:51,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-20 09:11:51,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M38.o1125222 [2024-11-20 09:11:51,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-20 09:11:51,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-20 09:11:51,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-20 09:11:51,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-20 09:11:51,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G239_G239_M28.o1125212 [2024-11-20 09:11:51,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-20 09:11:51,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-20 09:11:51,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2024-11-20 09:11:51,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-20 09:11:51,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-20 09:11:51,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2024-11-20 09:11:51,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-11-20 09:11:51,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,439] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,440] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,440] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:51,440] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-11-20 09:11:52,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-20 09:11:52,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-20 09:11:52,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-20 09:11:52,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-20 09:11:52,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-11-20 09:11:52,268] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-20 09:11:52,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-20 09:11:52,270] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-20 09:11:52,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-20 09:11:52,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-11-20 09:11:55,463] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2024-11-20 09:11:55,477] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2024-11-20 09:11:55,481] multiqc [DEBUG ] No samples found: custom_content [2024-11-20 09:11:55,490] multiqc [DEBUG ] No samples found: ccs [2024-11-20 09:11:55,520] multiqc [DEBUG ] No samples found: ngsderive [2024-11-20 09:11:55,528] multiqc [DEBUG ] No samples found: purple [2024-11-20 09:11:55,534] multiqc [DEBUG ] No samples found: conpair [2024-11-20 09:11:55,568] multiqc [DEBUG ] No samples found: lima [2024-11-20 09:11:55,599] multiqc [DEBUG ] No samples found: peddy [2024-11-20 09:11:55,610] multiqc [DEBUG ] No samples found: somalier [2024-11-20 09:11:55,645] multiqc [DEBUG ] No samples found: methylQA [2024-11-20 09:11:55,672] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2024-11-20 09:11:55,672] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2024-11-20 09:11:55,672] multiqc [DEBUG ] No samples found: mosdepth [2024-11-20 09:11:55,680] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-11-20 09:11:55,710] multiqc [DEBUG ] No samples found: qualimap [2024-11-20 09:11:55,738] multiqc [DEBUG ] No samples found: preseq [2024-11-20 09:11:55,757] multiqc [DEBUG ] No samples found: quast [2024-11-20 09:11:55,779] multiqc [DEBUG ] No samples found: qorts [2024-11-20 09:11:55,820] multiqc [DEBUG ] No samples found: rna_seqc [2024-11-20 09:11:55,857] multiqc [DEBUG ] No samples found: rockhopper [2024-11-20 09:11:55,887] multiqc [DEBUG ] No samples found: rsem [2024-11-20 09:11:55,985] multiqc.modules.rseqc.rseqc [INFO ] Found 40 infer_experiment reports [2024-11-20 09:11:56,024] multiqc [DEBUG ] No samples found: busco [2024-11-20 09:11:56,030] multiqc [DEBUG ] No samples found: bustools [2024-11-20 09:11:56,069] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-11-20 09:11:56,101] multiqc [DEBUG ] No samples found: gffcompare [2024-11-20 09:11:56,110] multiqc [DEBUG ] No samples found: disambiguate [2024-11-20 09:11:56,140] multiqc [DEBUG ] No samples found: supernova [2024-11-20 09:11:56,220] multiqc [DEBUG ] No samples found: deeptools [2024-11-20 09:11:56,239] multiqc [DEBUG ] No samples found: sargasso [2024-11-20 09:11:56,268] multiqc [DEBUG ] No samples found: verifybamid [2024-11-20 09:11:56,301] multiqc [DEBUG ] No samples found: mirtrace [2024-11-20 09:11:56,313] multiqc [DEBUG ] No samples found: happy [2024-11-20 09:11:56,321] multiqc [DEBUG ] No samples found: mirtop [2024-11-20 09:11:56,346] multiqc [DEBUG ] No samples found: sambamba [2024-11-20 09:11:56,359] multiqc [DEBUG ] No samples found: homer [2024-11-20 09:11:56,384] multiqc [DEBUG ] No samples found: hops [2024-11-20 09:11:56,394] multiqc [DEBUG ] No samples found: macs2 [2024-11-20 09:11:56,402] multiqc [DEBUG ] No samples found: theta2 [2024-11-20 09:11:56,428] multiqc [DEBUG ] No samples found: snpeff [2024-11-20 09:11:56,457] multiqc [DEBUG ] No samples found: gatk [2024-11-20 09:11:56,466] multiqc [DEBUG ] No samples found: htseq [2024-11-20 09:11:56,475] multiqc [DEBUG ] No samples found: bcftools [2024-11-20 09:11:56,490] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M37_sorted [2024-11-20 09:11:56,492] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M39_sorted [2024-11-20 09:11:56,495] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M28_sorted [2024-11-20 09:11:56,498] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M17_sorted [2024-11-20 09:11:56,500] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M34_sorted [2024-11-20 09:11:56,502] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M19_sorted [2024-11-20 09:11:56,505] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M36_sorted [2024-11-20 09:11:56,507] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M06_sorted [2024-11-20 09:11:56,509] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M23_sorted [2024-11-20 09:11:56,511] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M40_sorted [2024-11-20 09:11:56,513] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M08_sorted [2024-11-20 09:11:56,515] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M25_sorted [2024-11-20 09:11:56,518] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M12_sorted [2024-11-20 09:11:56,520] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M14_sorted [2024-11-20 09:11:56,522] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M31_sorted [2024-11-20 09:11:56,525] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M01_sorted [2024-11-20 09:11:56,527] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M03_sorted [2024-11-20 09:11:56,529] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M20_sorted [2024-11-20 09:11:56,531] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M05_sorted [2024-11-20 09:11:56,533] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M11_sorted [2024-11-20 09:11:56,535] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M38_sorted [2024-11-20 09:11:56,537] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M27_sorted [2024-11-20 09:11:56,538] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M29_sorted [2024-11-20 09:11:56,540] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M16_sorted [2024-11-20 09:11:56,541] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M33_sorted [2024-11-20 09:11:56,543] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M18_sorted [2024-11-20 09:11:56,545] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M35_sorted [2024-11-20 09:11:56,547] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M22_sorted [2024-11-20 09:11:56,549] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M07_sorted [2024-11-20 09:11:56,551] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M24_sorted [2024-11-20 09:11:56,553] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M09_sorted [2024-11-20 09:11:56,555] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M26_sorted [2024-11-20 09:11:56,557] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M13_sorted [2024-11-20 09:11:56,559] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M30_sorted [2024-11-20 09:11:56,560] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M15_sorted [2024-11-20 09:11:56,561] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M32_sorted [2024-11-20 09:11:56,562] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M02_sorted [2024-11-20 09:11:56,563] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M04_sorted [2024-11-20 09:11:56,564] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M21_sorted [2024-11-20 09:11:56,564] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G239_M10_sorted [2024-11-20 09:11:56,565] multiqc.modules.featureCounts.feature_counts [INFO ] Found 40 reports [2024-11-20 09:11:56,614] multiqc [DEBUG ] No samples found: fgbio [2024-11-20 09:11:56,715] multiqc [DEBUG ] No samples found: dragen [2024-11-20 09:11:56,748] multiqc [DEBUG ] No samples found: dedup [2024-11-20 09:11:56,769] multiqc [DEBUG ] No samples found: damageprofiler [2024-11-20 09:11:56,908] multiqc [DEBUG ] No samples found: biobambam2 [2024-11-20 09:11:56,916] multiqc [DEBUG ] No samples found: jcvi [2024-11-20 09:11:56,922] multiqc [DEBUG ] No samples found: mtnucratio [2024-11-20 09:11:58,539] multiqc.modules.picard.picard [INFO ] Found 40 InsertSizeMetrics reports [2024-11-20 09:11:58,568] multiqc.modules.picard.picard [INFO ] Found 40 MarkDuplicates reports [2024-11-20 09:11:58,635] multiqc.modules.picard.picard [INFO ] Found 40 RnaSeqMetrics reports [2024-11-20 09:11:58,640] multiqc [DEBUG ] No samples found: vep [2024-11-20 09:11:58,647] multiqc [DEBUG ] No samples found: sentieon [2024-11-20 09:11:58,651] multiqc [DEBUG ] No samples found: prokka [2024-11-20 09:11:58,655] multiqc [DEBUG ] No samples found: qc3C [2024-11-20 09:11:58,659] multiqc [DEBUG ] No samples found: nanostat [2024-11-20 09:11:58,663] multiqc [DEBUG ] No samples found: samblaster [2024-11-20 09:11:58,735] multiqc.modules.samtools.samtools [INFO ] Found 120 flagstat reports [2024-11-20 09:11:58,739] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-11-20 09:11:58,743] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2024-11-20 09:11:58,749] multiqc [DEBUG ] No samples found: bamtools [2024-11-20 09:11:58,753] multiqc [DEBUG ] No samples found: jellyfish [2024-11-20 09:11:58,760] multiqc [DEBUG ] No samples found: vcftools [2024-11-20 09:11:58,764] multiqc [DEBUG ] No samples found: longranger [2024-11-20 09:11:58,769] multiqc [DEBUG ] No samples found: stacks [2024-11-20 09:11:58,773] multiqc [DEBUG ] No samples found: varscan2 [2024-11-20 09:11:58,777] multiqc [DEBUG ] No samples found: snippy [2024-11-20 09:11:58,791] multiqc [DEBUG ] No samples found: bbmap [2024-11-20 09:11:58,834] multiqc [DEBUG ] No samples found: bismark [2024-11-20 09:11:58,839] multiqc [DEBUG ] No samples found: biscuit [2024-11-20 09:11:58,843] multiqc [DEBUG ] No samples found: hicexplorer [2024-11-20 09:11:58,848] multiqc [DEBUG ] No samples found: hicup [2024-11-20 09:11:58,852] multiqc [DEBUG ] No samples found: hicpro [2024-11-20 09:11:58,856] multiqc [DEBUG ] No samples found: salmon [2024-11-20 09:11:58,860] multiqc [DEBUG ] No samples found: kallisto [2024-11-20 09:11:58,864] multiqc [DEBUG ] No samples found: slamdunk [2024-11-20 09:12:01,824] multiqc.modules.star.star [INFO ] Found 40 reports and 40 gene count files [2024-11-20 09:12:01,831] multiqc [DEBUG ] No samples found: hisat2 [2024-11-20 09:12:01,836] multiqc [DEBUG ] No samples found: tophat [2024-11-20 09:12:01,842] multiqc [DEBUG ] No samples found: bowtie2 [2024-11-20 09:12:01,846] multiqc [DEBUG ] No samples found: bowtie1 [2024-11-20 09:12:01,851] multiqc [DEBUG ] No samples found: snpsplit [2024-11-20 09:12:01,855] multiqc [DEBUG ] No samples found: odgi [2024-11-20 09:12:01,859] multiqc [DEBUG ] No samples found: pangolin [2024-11-20 09:12:01,868] multiqc [DEBUG ] No samples found: kat [2024-11-20 09:12:01,875] multiqc [DEBUG ] No samples found: leehom [2024-11-20 09:12:01,880] multiqc [DEBUG ] No samples found: adapterRemoval [2024-11-20 09:12:01,885] multiqc [DEBUG ] No samples found: clipandmerge [2024-11-20 09:12:01,889] multiqc [DEBUG ] No samples found: cutadapt [2024-11-20 09:12:01,893] multiqc [DEBUG ] No samples found: flexbar [2024-11-20 09:12:01,912] multiqc [DEBUG ] No samples found: kaiju [2024-11-20 09:12:01,918] multiqc [DEBUG ] No samples found: kraken [2024-11-20 09:12:01,923] multiqc [DEBUG ] No samples found: malt [2024-11-20 09:12:01,927] multiqc [DEBUG ] No samples found: trimmomatic [2024-11-20 09:12:01,931] multiqc [DEBUG ] No samples found: sickle [2024-11-20 09:12:01,935] multiqc [DEBUG ] No samples found: skewer [2024-11-20 09:12:01,939] multiqc [DEBUG ] No samples found: sortmerna [2024-11-20 09:12:01,944] multiqc [DEBUG ] No samples found: biobloomtools [2024-11-20 09:12:01,948] multiqc [DEBUG ] No samples found: fastq_screen [2024-11-20 09:12:01,953] multiqc [DEBUG ] No samples found: afterqc [2024-11-20 09:12:01,973] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:01,993] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,012] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,033] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,060] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,078] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,095] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,114] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,133] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,151] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,171] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,194] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,212] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,237] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,253] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,279] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,292] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,313] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,372] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,390] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,408] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,440] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,462] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,472] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,482] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,499] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,527] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,546] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,567] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,587] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,602] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,614] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,632] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,651] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,678] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,699] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,723] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,741] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,753] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,769] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,788] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,814] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,839] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,862] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,932] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,965] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:02,986] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,008] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,032] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,056] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,084] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,104] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,129] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,143] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,161] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,189] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,217] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,237] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,259] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,275] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,294] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,306] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,321] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,333] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,358] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,369] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,403] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,430] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,464] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,484] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,500] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,518] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,539] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,559] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,586] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,609] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,627] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,642] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,662] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,683] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,688] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,693] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,696] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,699] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,702] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,705] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,708] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,711] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,714] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,717] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,720] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,723] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,726] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,729] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,732] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,739] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,742] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,746] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,749] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,753] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,756] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,759] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,762] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,764] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,767] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,770] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,773] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,776] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,779] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,782] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,785] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,788] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,790] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,793] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,796] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,799] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,802] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,804] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,807] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,810] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-11-20 09:12:03,811] multiqc.modules.fastp.fastp [INFO ] Found 40 reports [2024-11-20 09:12:04,350] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1 [2024-11-20 09:12:13,958] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,064] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M28_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,189] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M21_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,316] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M19_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,444] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M34_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,579] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M23_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,711] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M13_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,837] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M22_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:14,964] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M12_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,095] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M31_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,227] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M36_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,353] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M30_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,458] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M01_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,589] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M08_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,717] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M40_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,841] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M06_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:15,959] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M16_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,089] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M05_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,215] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M18_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,337] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M09_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,456] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M03_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,582] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M04_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,735] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M26_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,863] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M07_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:16,985] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M39_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,144] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M17_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,273] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M15_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,400] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M35_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,534] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M32_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,666] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M02_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,790] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M33_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:17,937] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M29_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,071] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M27_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,202] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M24_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,314] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M10_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,437] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M37_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,562] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M20_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,686] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M25_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,816] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M38_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:18,978] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: G239_M11_CKDL240037415-1A_22TFMNLT3_L7_2 [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M14_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M14_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M14_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M28_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M28_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M28_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M28_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M21_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M21_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M21_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M21_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M19_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M19_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M19_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M19_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M34_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M34_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M34_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M34_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M23_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M23_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M23_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M23_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M13_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M13_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,089] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M13_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M13_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M22_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M22_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M22_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M22_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M12_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M12_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M12_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M12_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M31_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M31_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M31_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M31_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M36_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M36_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M36_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M36_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M30_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M30_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M30_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M30_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M01_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M01_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M01_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M08_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M08_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,090] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M08_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M08_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M40_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M40_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M40_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M40_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M06_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M06_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M06_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M06_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M16_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M16_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M16_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M16_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M05_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M05_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M05_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M05_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M18_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M18_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M18_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M18_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M09_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M09_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M09_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M09_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M03_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M03_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M03_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M03_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,091] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M04_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M04_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M04_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M04_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M26_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M26_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M26_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M26_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M07_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M07_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M07_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M07_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M39_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M39_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M39_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M39_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M17_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M17_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M17_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M17_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M15_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M15_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M15_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M15_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M35_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M35_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M35_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M35_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M32_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M32_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,092] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M32_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M32_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M02_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M02_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M02_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M02_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M33_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M33_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M33_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M33_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M29_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M29_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M29_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M29_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M24_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M24_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M24_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M24_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M10_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M10_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M10_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M10_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M37_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M37_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M37_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M37_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M20_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M20_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M20_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M20_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,093] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M25_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M25_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,094] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M25_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M25_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,094] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M38_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M38_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,094] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M38_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M38_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,094] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M11_CKDL240037415-1A_22TFMNLT3_L7_2_fastqc.zip' as already parsed 'G239_M11_CKDL240037415-1A_22TFMNLT3_L7_2' [2024-11-20 09:12:19,094] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'G239_M11_CKDL240037415-1A_22TFMNLT3_L7_1_fastqc.zip' as already parsed 'G239_M11_CKDL240037415-1A_22TFMNLT3_L7_1' [2024-11-20 09:12:19,094] multiqc.modules.fastqc.fastqc [INFO ] Found 80 reports [2024-11-20 09:12:19,096] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2024-11-20 09:12:25,007] multiqc [DEBUG ] No samples found: pychopper [2024-11-20 09:12:25,012] multiqc [DEBUG ] No samples found: pycoqc [2024-11-20 09:12:25,016] multiqc [DEBUG ] No samples found: minionqc [2024-11-20 09:12:25,021] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-11-20 09:12:25,025] multiqc [DEBUG ] No samples found: clusterflow [2024-11-20 09:12:25,029] multiqc [DEBUG ] No samples found: bcl2fastq [2024-11-20 09:12:25,034] multiqc [DEBUG ] No samples found: bclconvert [2024-11-20 09:12:25,038] multiqc [DEBUG ] No samples found: interop [2024-11-20 09:12:25,044] multiqc [DEBUG ] No samples found: ivar [2024-11-20 09:12:25,048] multiqc [DEBUG ] No samples found: flash [2024-11-20 09:12:25,053] multiqc [DEBUG ] No samples found: seqyclean [2024-11-20 09:12:25,062] multiqc [DEBUG ] No samples found: optitype [2024-11-20 09:12:25,274] multiqc [INFO ] Compressing plot data [2024-11-20 09:12:29,594] multiqc [INFO ] Report : multiqc_report.html [2024-11-20 09:12:29,594] multiqc [INFO ] Data : multiqc_data [2024-11-20 09:12:29,594] multiqc [DEBUG ] Moving data file from '/scratch/tmp346f5iri/multiqc_data' to '/projectnb/wax-dk/max/G239/Scripts/99_final_summary/G239_multiqc_report/multiqc_data' [2024-11-20 09:12:29,776] multiqc [INFO ] MultiQC complete [2024-11-20 09:12:29,777] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers