[2025-08-06 13:40:48,868] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-06 13:40:48,868] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-06 13:40:48,868] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-08-06 13:40:48,870] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-06 13:40:48,871] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-06 13:40:48,871] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-06 13:40:48,871] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-06 13:40:48,871] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G244_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-06 13:40:49,274] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-06 13:40:49,274] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G244_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-06 13:40:49,275] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G244_RNASEQ/Scripts/99_final_summary/G244_RNASEQ_multiqc_report [2025-08-06 13:40:49,275] multiqc [DEBUG ] Template : default [2025-08-06 13:40:49,275] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-06 13:40:49,276] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-06 13:40:49,277] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp59k2ia_k [2025-08-06 13:40:49,353] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G244_RNASEQ/SAMPLES [2025-08-06 13:40:49,353] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/03_FASTQC [2025-08-06 13:40:49,353] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G244_RNASEQ/Scripts/06_CollectMetrics [2025-08-06 13:40:49,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M11_COMB_1.fq.gz [2025-08-06 13:40:49,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M11_COMB_2.fq.gz [2025-08-06 13:40:49,764] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,768] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,774] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,774] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:49,775] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M11_SJ.out.tab [2025-08-06 13:40:51,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M11_marked_dup_metrics.txt [2025-08-06 13:40:51,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M11_marked_dup_metrics.txt [2025-08-06 13:40:51,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M11_marked_dup_metrics.txt [2025-08-06 13:40:51,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M11_marked_dup_metrics.txt [2025-08-06 13:40:51,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M11_marked_dup_metrics.txt [2025-08-06 13:40:52,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:52,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:52,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:52,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:52,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:52,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M11_hist.pdf [2025-08-06 13:40:52,135] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:52,164] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,110] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,115] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,115] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,115] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,115] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,115] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:53,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M11_featureCounts.out [2025-08-06 13:40:54,089] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:54,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:54,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M11_metrics [2025-08-06 13:40:54,150] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M15_COMB_2.fq.gz [2025-08-06 13:40:54,150] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M15_COMB_1.fq.gz [2025-08-06 13:40:54,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,233] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,233] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:54,234] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M15_SJ.out.tab [2025-08-06 13:40:56,185] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M15_marked_dup_metrics.txt [2025-08-06 13:40:56,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M15_marked_dup_metrics.txt [2025-08-06 13:40:56,188] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M15_marked_dup_metrics.txt [2025-08-06 13:40:56,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M15_marked_dup_metrics.txt [2025-08-06 13:40:56,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M15_marked_dup_metrics.txt [2025-08-06 13:40:56,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M15_hist.pdf [2025-08-06 13:40:56,211] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:56,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:56,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:56,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:56,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:56,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,298] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,303] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,304] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:56,323] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,332] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:57,353] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M15_featureCounts.out [2025-08-06 13:40:58,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:58,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:58,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M15_metrics [2025-08-06 13:40:58,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M02_COMB_2.fq.gz [2025-08-06 13:40:58,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M02_COMB_1.fq.gz [2025-08-06 13:40:58,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:40:58,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M02_SJ.out.tab [2025-08-06 13:41:00,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M02_marked_dup_metrics.txt [2025-08-06 13:41:00,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M02_marked_dup_metrics.txt [2025-08-06 13:41:00,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M02_marked_dup_metrics.txt [2025-08-06 13:41:00,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M02_marked_dup_metrics.txt [2025-08-06 13:41:00,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M02_marked_dup_metrics.txt [2025-08-06 13:41:00,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M02_hist.pdf [2025-08-06 13:41:00,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:00,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:00,620] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:00,620] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:00,626] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:00,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,726] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,726] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,727] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,727] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,727] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,727] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,727] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:00,746] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,738] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,743] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:01,764] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M02_featureCounts.out [2025-08-06 13:41:02,708] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:02,711] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:02,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M02_metrics [2025-08-06 13:41:02,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M30_COMB_1.fq.gz [2025-08-06 13:41:02,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M30_COMB_2.fq.gz [2025-08-06 13:41:02,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,809] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:02,847] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M30_SJ.out.tab [2025-08-06 13:41:04,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M30_marked_dup_metrics.txt [2025-08-06 13:41:04,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M30_marked_dup_metrics.txt [2025-08-06 13:41:04,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M30_marked_dup_metrics.txt [2025-08-06 13:41:04,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M30_marked_dup_metrics.txt [2025-08-06 13:41:04,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M30_marked_dup_metrics.txt [2025-08-06 13:41:04,527] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:04,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:04,530] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:04,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:04,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:04,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M30_hist.pdf [2025-08-06 13:41:04,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,615] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,620] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,620] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,620] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,620] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,621] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,621] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,621] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:04,639] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,606] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:05,626] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M30_featureCounts.out [2025-08-06 13:41:06,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:06,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:06,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M30_metrics [2025-08-06 13:41:06,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M19_COMB_2.fq.gz [2025-08-06 13:41:06,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M19_COMB_1.fq.gz [2025-08-06 13:41:06,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,741] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:06,741] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M19_SJ.out.tab [2025-08-06 13:41:08,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M19_marked_dup_metrics.txt [2025-08-06 13:41:08,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M19_marked_dup_metrics.txt [2025-08-06 13:41:08,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M19_marked_dup_metrics.txt [2025-08-06 13:41:08,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M19_marked_dup_metrics.txt [2025-08-06 13:41:08,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M19_marked_dup_metrics.txt [2025-08-06 13:41:08,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:08,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:08,958] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:08,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:08,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:09,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M19_hist.pdf [2025-08-06 13:41:09,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,084] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,085] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:09,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,102] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:10,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M19_featureCounts.out [2025-08-06 13:41:11,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:11,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:11,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M19_metrics [2025-08-06 13:41:11,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M03_COMB_2.fq.gz [2025-08-06 13:41:11,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M03_COMB_1.fq.gz [2025-08-06 13:41:11,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:11,256] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M03_SJ.out.tab [2025-08-06 13:41:13,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M03_marked_dup_metrics.txt [2025-08-06 13:41:13,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M03_marked_dup_metrics.txt [2025-08-06 13:41:13,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M03_marked_dup_metrics.txt [2025-08-06 13:41:13,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M03_marked_dup_metrics.txt [2025-08-06 13:41:13,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M03_marked_dup_metrics.txt [2025-08-06 13:41:13,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:13,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:13,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:13,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:13,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:13,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M03_hist.pdf [2025-08-06 13:41:13,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,722] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:13,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,724] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,724] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,724] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:14,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M03_featureCounts.out [2025-08-06 13:41:15,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:15,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:15,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M03_metrics [2025-08-06 13:41:15,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M06_COMB_1.fq.gz [2025-08-06 13:41:15,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M06_COMB_2.fq.gz [2025-08-06 13:41:15,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,884] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,884] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:15,885] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M06_SJ.out.tab [2025-08-06 13:41:17,907] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M06_marked_dup_metrics.txt [2025-08-06 13:41:17,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M06_marked_dup_metrics.txt [2025-08-06 13:41:17,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M06_marked_dup_metrics.txt [2025-08-06 13:41:17,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M06_marked_dup_metrics.txt [2025-08-06 13:41:17,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M06_marked_dup_metrics.txt [2025-08-06 13:41:17,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:17,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:17,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:17,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:17,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:18,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M06_hist.pdf [2025-08-06 13:41:18,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,042] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,048] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,048] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,049] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,049] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,049] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:18,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,077] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,078] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:19,097] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M06_featureCounts.out [2025-08-06 13:41:20,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:20,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:20,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M06_metrics [2025-08-06 13:41:20,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M31_COMB_2.fq.gz [2025-08-06 13:41:20,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M31_COMB_1.fq.gz [2025-08-06 13:41:20,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,236] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:20,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M31_SJ.out.tab [2025-08-06 13:41:21,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M31_marked_dup_metrics.txt [2025-08-06 13:41:21,430] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M31_marked_dup_metrics.txt [2025-08-06 13:41:21,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M31_marked_dup_metrics.txt [2025-08-06 13:41:21,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M31_marked_dup_metrics.txt [2025-08-06 13:41:21,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M31_marked_dup_metrics.txt [2025-08-06 13:41:21,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:21,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:21,457] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:21,457] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:21,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:21,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M31_hist.pdf [2025-08-06 13:41:21,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,543] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:21,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:25,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:25,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:25,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:25,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:26,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M31_featureCounts.out [2025-08-06 13:41:27,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:27,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:27,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M31_metrics [2025-08-06 13:41:27,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M34_COMB_2.fq.gz [2025-08-06 13:41:27,059] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M34_COMB_1.fq.gz [2025-08-06 13:41:27,132] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,135] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,140] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:27,141] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M34_SJ.out.tab [2025-08-06 13:41:29,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M34_marked_dup_metrics.txt [2025-08-06 13:41:29,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M34_marked_dup_metrics.txt [2025-08-06 13:41:29,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M34_marked_dup_metrics.txt [2025-08-06 13:41:29,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M34_marked_dup_metrics.txt [2025-08-06 13:41:29,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M34_marked_dup_metrics.txt [2025-08-06 13:41:29,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:29,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:29,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:29,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:29,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:29,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M34_hist.pdf [2025-08-06 13:41:29,469] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,472] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,472] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,477] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,478] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:29,497] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,480] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,480] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,480] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,480] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,481] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,481] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,481] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:30,500] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M34_featureCounts.out [2025-08-06 13:41:31,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:31,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:31,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M34_metrics [2025-08-06 13:41:31,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M35_COMB_2.fq.gz [2025-08-06 13:41:31,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M35_COMB_1.fq.gz [2025-08-06 13:41:31,644] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:31,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M35_SJ.out.tab [2025-08-06 13:41:37,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M35_marked_dup_metrics.txt [2025-08-06 13:41:38,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M35_marked_dup_metrics.txt [2025-08-06 13:41:38,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M35_marked_dup_metrics.txt [2025-08-06 13:41:38,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M35_marked_dup_metrics.txt [2025-08-06 13:41:40,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M35_marked_dup_metrics.txt [2025-08-06 13:41:40,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:40,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:40,282] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:40,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:40,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:40,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M35_hist.pdf [2025-08-06 13:41:40,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:40,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,417] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:41,442] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M35_featureCounts.out [2025-08-06 13:41:42,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:42,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:42,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M35_metrics [2025-08-06 13:41:42,414] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M22_COMB_2.fq.gz [2025-08-06 13:41:42,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M22_COMB_1.fq.gz [2025-08-06 13:41:42,519] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:42,529] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M22_SJ.out.tab [2025-08-06 13:41:44,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M22_marked_dup_metrics.txt [2025-08-06 13:41:44,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M22_marked_dup_metrics.txt [2025-08-06 13:41:44,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M22_marked_dup_metrics.txt [2025-08-06 13:41:44,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M22_marked_dup_metrics.txt [2025-08-06 13:41:44,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M22_marked_dup_metrics.txt [2025-08-06 13:41:44,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:44,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:44,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:44,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:44,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:44,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M22_hist.pdf [2025-08-06 13:41:44,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,530] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,536] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,536] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,536] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,537] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,537] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,537] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,537] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:44,557] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:45,548] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M22_featureCounts.out [2025-08-06 13:41:46,482] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:46,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:46,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M22_metrics [2025-08-06 13:41:46,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M26_COMB_2.fq.gz [2025-08-06 13:41:46,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M26_COMB_1.fq.gz [2025-08-06 13:41:46,656] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:46,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M26_SJ.out.tab [2025-08-06 13:41:48,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M26_marked_dup_metrics.txt [2025-08-06 13:41:48,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M26_marked_dup_metrics.txt [2025-08-06 13:41:48,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M26_marked_dup_metrics.txt [2025-08-06 13:41:48,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M26_marked_dup_metrics.txt [2025-08-06 13:41:48,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M26_marked_dup_metrics.txt [2025-08-06 13:41:48,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:48,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:48,562] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:48,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:48,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:48,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M26_hist.pdf [2025-08-06 13:41:48,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,681] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:48,702] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,676] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:49,700] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M26_featureCounts.out [2025-08-06 13:41:50,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:50,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:50,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M26_metrics [2025-08-06 13:41:50,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M10_COMB_1.fq.gz [2025-08-06 13:41:50,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M10_COMB_2.fq.gz [2025-08-06 13:41:50,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,726] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,731] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:50,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M10_SJ.out.tab [2025-08-06 13:41:52,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M10_marked_dup_metrics.txt [2025-08-06 13:41:52,924] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M10_marked_dup_metrics.txt [2025-08-06 13:41:52,924] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M10_marked_dup_metrics.txt [2025-08-06 13:41:52,924] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M10_marked_dup_metrics.txt [2025-08-06 13:41:52,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M10_marked_dup_metrics.txt [2025-08-06 13:41:52,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M10_hist.pdf [2025-08-06 13:41:52,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:52,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:52,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:52,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:52,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:53,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,085] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,085] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,091] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,091] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,091] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,092] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,092] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,092] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,092] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:53,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,083] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:54,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M10_featureCounts.out [2025-08-06 13:41:55,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:55,019] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:55,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M10_metrics [2025-08-06 13:41:55,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M13_COMB_2.fq.gz [2025-08-06 13:41:55,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M13_COMB_1.fq.gz [2025-08-06 13:41:55,211] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:55,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M13_SJ.out.tab [2025-08-06 13:41:57,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M13_marked_dup_metrics.txt [2025-08-06 13:41:57,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M13_marked_dup_metrics.txt [2025-08-06 13:41:57,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M13_marked_dup_metrics.txt [2025-08-06 13:41:57,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M13_marked_dup_metrics.txt [2025-08-06 13:41:57,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M13_marked_dup_metrics.txt [2025-08-06 13:41:57,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:57,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:57,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:57,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:57,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:57,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M13_hist.pdf [2025-08-06 13:41:57,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:57,378] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,348] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,354] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,354] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,355] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,355] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,355] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,355] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,355] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:58,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M13_featureCounts.out [2025-08-06 13:41:59,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:59,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:59,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M13_metrics [2025-08-06 13:41:59,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M14_COMB_1.fq.gz [2025-08-06 13:41:59,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M14_COMB_2.fq.gz [2025-08-06 13:41:59,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,444] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,449] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:41:59,450] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M14_SJ.out.tab [2025-08-06 13:42:01,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M14_marked_dup_metrics.txt [2025-08-06 13:42:01,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M14_marked_dup_metrics.txt [2025-08-06 13:42:01,440] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M14_marked_dup_metrics.txt [2025-08-06 13:42:01,440] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M14_marked_dup_metrics.txt [2025-08-06 13:42:01,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M14_marked_dup_metrics.txt [2025-08-06 13:42:01,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M14_hist.pdf [2025-08-06 13:42:01,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:01,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:01,476] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:01,476] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:01,483] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:01,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,595] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,600] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,600] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,601] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,601] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,601] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,601] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,601] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:01,620] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,585] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,591] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:02,611] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M14_featureCounts.out [2025-08-06 13:42:03,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:03,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:03,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M14_metrics [2025-08-06 13:42:03,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M17_COMB_1.fq.gz [2025-08-06 13:42:03,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M17_COMB_2.fq.gz [2025-08-06 13:42:03,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,742] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,742] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:03,743] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M17_SJ.out.tab [2025-08-06 13:42:05,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M17_marked_dup_metrics.txt [2025-08-06 13:42:05,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M17_marked_dup_metrics.txt [2025-08-06 13:42:05,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M17_marked_dup_metrics.txt [2025-08-06 13:42:05,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M17_marked_dup_metrics.txt [2025-08-06 13:42:05,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M17_marked_dup_metrics.txt [2025-08-06 13:42:05,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:05,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:05,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:05,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:05,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:05,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M17_hist.pdf [2025-08-06 13:42:05,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:05,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,876] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,876] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:06,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M17_featureCounts.out [2025-08-06 13:42:07,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:07,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:07,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M17_metrics [2025-08-06 13:42:07,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M01_COMB_1.fq.gz [2025-08-06 13:42:07,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M01_COMB_2.fq.gz [2025-08-06 13:42:07,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,956] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,956] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,962] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,962] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,962] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,963] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,963] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,963] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,963] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:07,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M01_SJ.out.tab [2025-08-06 13:42:09,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M01_marked_dup_metrics.txt [2025-08-06 13:42:09,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M01_marked_dup_metrics.txt [2025-08-06 13:42:09,929] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M01_marked_dup_metrics.txt [2025-08-06 13:42:09,929] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M01_marked_dup_metrics.txt [2025-08-06 13:42:09,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M01_marked_dup_metrics.txt [2025-08-06 13:42:09,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:09,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:09,968] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:09,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:09,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:10,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M01_hist.pdf [2025-08-06 13:42:10,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,097] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:10,118] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,087] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,087] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,087] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,088] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,088] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,088] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,088] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:11,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M01_featureCounts.out [2025-08-06 13:42:12,037] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:12,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:12,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M01_metrics [2025-08-06 13:42:12,102] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M18_COMB_1.fq.gz [2025-08-06 13:42:12,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M18_COMB_2.fq.gz [2025-08-06 13:42:12,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,211] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,211] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:12,212] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M18_SJ.out.tab [2025-08-06 13:42:14,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M18_marked_dup_metrics.txt [2025-08-06 13:42:14,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M18_marked_dup_metrics.txt [2025-08-06 13:42:14,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M18_marked_dup_metrics.txt [2025-08-06 13:42:14,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M18_marked_dup_metrics.txt [2025-08-06 13:42:14,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M18_marked_dup_metrics.txt [2025-08-06 13:42:14,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M18_hist.pdf [2025-08-06 13:42:14,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:14,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:14,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:14,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:14,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:14,330] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:14,368] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,348] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,353] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:15,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M18_featureCounts.out [2025-08-06 13:42:16,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:16,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:16,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M18_metrics [2025-08-06 13:42:16,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M05_COMB_1.fq.gz [2025-08-06 13:42:16,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M05_COMB_2.fq.gz [2025-08-06 13:42:16,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,479] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:16,486] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M05_SJ.out.tab [2025-08-06 13:42:18,720] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M05_marked_dup_metrics.txt [2025-08-06 13:42:18,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M05_marked_dup_metrics.txt [2025-08-06 13:42:18,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M05_marked_dup_metrics.txt [2025-08-06 13:42:18,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M05_marked_dup_metrics.txt [2025-08-06 13:42:18,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M05_marked_dup_metrics.txt [2025-08-06 13:42:18,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M05_hist.pdf [2025-08-06 13:42:18,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:18,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:18,754] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:18,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:18,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:18,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,840] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,840] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,845] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:18,865] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,817] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,826] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:19,847] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M05_featureCounts.out [2025-08-06 13:42:20,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:20,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:20,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M05_metrics [2025-08-06 13:42:20,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M33_COMB_1.fq.gz [2025-08-06 13:42:20,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M33_COMB_2.fq.gz [2025-08-06 13:42:20,920] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,923] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,923] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:20,929] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M33_SJ.out.tab [2025-08-06 13:42:22,907] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M33_marked_dup_metrics.txt [2025-08-06 13:42:22,911] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M33_marked_dup_metrics.txt [2025-08-06 13:42:22,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M33_marked_dup_metrics.txt [2025-08-06 13:42:22,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M33_marked_dup_metrics.txt [2025-08-06 13:42:22,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M33_marked_dup_metrics.txt [2025-08-06 13:42:22,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:22,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:22,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:22,953] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:22,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:23,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M33_hist.pdf [2025-08-06 13:42:23,037] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,048] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:23,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,082] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:24,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M33_featureCounts.out [2025-08-06 13:42:25,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:25,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:25,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M33_metrics [2025-08-06 13:42:25,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M09_COMB_2.fq.gz [2025-08-06 13:42:25,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M09_COMB_1.fq.gz [2025-08-06 13:42:25,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,166] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:25,198] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M09_SJ.out.tab [2025-08-06 13:42:26,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M09_marked_dup_metrics.txt [2025-08-06 13:42:26,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M09_marked_dup_metrics.txt [2025-08-06 13:42:26,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M09_marked_dup_metrics.txt [2025-08-06 13:42:26,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M09_marked_dup_metrics.txt [2025-08-06 13:42:26,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M09_marked_dup_metrics.txt [2025-08-06 13:42:26,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M09_hist.pdf [2025-08-06 13:42:26,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:26,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:26,924] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:26,924] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:26,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:27,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,034] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,034] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,039] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:27,059] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,040] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,041] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,046] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,046] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,046] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,046] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,047] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,047] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,047] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,067] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M09_featureCounts.out [2025-08-06 13:42:28,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:28,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:28,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M09_metrics [2025-08-06 13:42:29,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M21_COMB_2.fq.gz [2025-08-06 13:42:29,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M21_COMB_1.fq.gz [2025-08-06 13:42:29,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,169] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,173] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:29,174] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M21_SJ.out.tab [2025-08-06 13:42:31,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M21_marked_dup_metrics.txt [2025-08-06 13:42:31,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M21_marked_dup_metrics.txt [2025-08-06 13:42:31,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M21_marked_dup_metrics.txt [2025-08-06 13:42:31,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M21_marked_dup_metrics.txt [2025-08-06 13:42:31,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M21_marked_dup_metrics.txt [2025-08-06 13:42:31,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M21_hist.pdf [2025-08-06 13:42:31,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:31,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:31,129] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:31,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:31,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:31,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,243] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:31,264] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:32,272] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M21_featureCounts.out [2025-08-06 13:42:33,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:33,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:33,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M21_metrics [2025-08-06 13:42:33,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M24_COMB_2.fq.gz [2025-08-06 13:42:33,268] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M24_COMB_1.fq.gz [2025-08-06 13:42:33,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,390] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:33,391] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M24_SJ.out.tab [2025-08-06 13:42:35,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M24_marked_dup_metrics.txt [2025-08-06 13:42:35,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M24_marked_dup_metrics.txt [2025-08-06 13:42:35,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M24_marked_dup_metrics.txt [2025-08-06 13:42:35,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M24_marked_dup_metrics.txt [2025-08-06 13:42:35,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M24_marked_dup_metrics.txt [2025-08-06 13:42:35,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M24_hist.pdf [2025-08-06 13:42:35,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:35,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:35,277] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:35,277] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:35,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:35,383] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,387] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,392] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,392] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,393] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:35,412] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,397] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,398] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:36,418] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M24_featureCounts.out [2025-08-06 13:42:37,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:37,357] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:37,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M24_metrics [2025-08-06 13:42:37,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M25_COMB_1.fq.gz [2025-08-06 13:42:37,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M25_COMB_2.fq.gz [2025-08-06 13:42:37,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,566] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,566] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:37,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M25_SJ.out.tab [2025-08-06 13:42:39,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M25_marked_dup_metrics.txt [2025-08-06 13:42:39,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M25_marked_dup_metrics.txt [2025-08-06 13:42:39,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M25_marked_dup_metrics.txt [2025-08-06 13:42:39,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M25_marked_dup_metrics.txt [2025-08-06 13:42:39,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M25_marked_dup_metrics.txt [2025-08-06 13:42:39,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M25_hist.pdf [2025-08-06 13:42:39,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:39,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:39,424] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:39,424] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:39,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:39,542] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:39,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,563] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,577] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,583] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,583] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,583] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,583] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,583] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,584] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,584] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:40,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M25_featureCounts.out [2025-08-06 13:42:41,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:41,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:41,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M25_metrics [2025-08-06 13:42:41,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M28_COMB_1.fq.gz [2025-08-06 13:42:41,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M28_COMB_2.fq.gz [2025-08-06 13:42:41,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:41,684] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M28_SJ.out.tab [2025-08-06 13:42:43,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M28_marked_dup_metrics.txt [2025-08-06 13:42:43,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M28_marked_dup_metrics.txt [2025-08-06 13:42:43,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M28_marked_dup_metrics.txt [2025-08-06 13:42:43,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M28_marked_dup_metrics.txt [2025-08-06 13:42:43,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M28_marked_dup_metrics.txt [2025-08-06 13:42:43,617] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M28_hist.pdf [2025-08-06 13:42:43,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:43,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:43,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:43,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:43,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:43,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:43,778] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:44,745] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M28_featureCounts.out [2025-08-06 13:42:45,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:45,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:45,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M28_metrics [2025-08-06 13:42:45,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M12_COMB_2.fq.gz [2025-08-06 13:42:45,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M12_COMB_1.fq.gz [2025-08-06 13:42:45,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,933] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,937] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,938] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:45,938] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M12_SJ.out.tab [2025-08-06 13:42:48,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M12_marked_dup_metrics.txt [2025-08-06 13:42:48,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M12_marked_dup_metrics.txt [2025-08-06 13:42:48,008] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M12_marked_dup_metrics.txt [2025-08-06 13:42:48,008] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M12_marked_dup_metrics.txt [2025-08-06 13:42:48,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M12_marked_dup_metrics.txt [2025-08-06 13:42:48,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M12_hist.pdf [2025-08-06 13:42:48,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:48,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:48,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:48,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:48,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:48,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,162] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,167] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:48,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:49,202] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M12_featureCounts.out [2025-08-06 13:42:50,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:50,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:50,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M12_metrics [2025-08-06 13:42:50,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M29_COMB_2.fq.gz [2025-08-06 13:42:50,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M29_COMB_1.fq.gz [2025-08-06 13:42:50,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:50,275] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M29_SJ.out.tab [2025-08-06 13:42:52,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M29_marked_dup_metrics.txt [2025-08-06 13:42:52,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M29_marked_dup_metrics.txt [2025-08-06 13:42:52,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M29_marked_dup_metrics.txt [2025-08-06 13:42:52,187] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M29_marked_dup_metrics.txt [2025-08-06 13:42:52,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M29_marked_dup_metrics.txt [2025-08-06 13:42:52,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M29_hist.pdf [2025-08-06 13:42:52,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:52,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:52,233] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:52,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:52,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:52,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,374] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,375] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,375] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,375] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:52,396] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,374] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,379] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,380] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:53,399] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M29_featureCounts.out [2025-08-06 13:42:54,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:54,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:54,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M29_metrics [2025-08-06 13:42:54,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M16_COMB_2.fq.gz [2025-08-06 13:42:54,394] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M16_COMB_1.fq.gz [2025-08-06 13:42:54,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,520] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:54,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M16_SJ.out.tab [2025-08-06 13:42:56,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M16_marked_dup_metrics.txt [2025-08-06 13:42:56,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M16_marked_dup_metrics.txt [2025-08-06 13:42:56,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M16_marked_dup_metrics.txt [2025-08-06 13:42:56,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M16_marked_dup_metrics.txt [2025-08-06 13:42:56,434] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M16_marked_dup_metrics.txt [2025-08-06 13:42:56,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M16_hist.pdf [2025-08-06 13:42:56,469] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:56,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:56,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:56,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:56,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:56,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,582] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:56,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,625] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,625] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,626] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,626] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,626] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,626] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,626] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,626] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:57,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M16_featureCounts.out [2025-08-06 13:42:58,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:58,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:58,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M16_metrics [2025-08-06 13:42:58,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M04_COMB_1.fq.gz [2025-08-06 13:42:58,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M04_COMB_2.fq.gz [2025-08-06 13:42:58,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,698] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,698] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,698] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,699] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,699] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,699] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,699] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:42:58,699] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M04_SJ.out.tab [2025-08-06 13:43:01,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M04_marked_dup_metrics.txt [2025-08-06 13:43:01,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M04_marked_dup_metrics.txt [2025-08-06 13:43:01,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M04_marked_dup_metrics.txt [2025-08-06 13:43:01,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M04_marked_dup_metrics.txt [2025-08-06 13:43:01,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M04_marked_dup_metrics.txt [2025-08-06 13:43:01,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M04_hist.pdf [2025-08-06 13:43:01,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:01,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:01,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:01,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:01,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:01,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,151] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:01,171] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,158] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,163] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:02,183] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M04_featureCounts.out [2025-08-06 13:43:03,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:03,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:03,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M04_metrics [2025-08-06 13:43:03,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M07_COMB_1.fq.gz [2025-08-06 13:43:03,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M07_COMB_2.fq.gz [2025-08-06 13:43:03,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,304] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,305] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,305] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:03,305] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M07_SJ.out.tab [2025-08-06 13:43:05,204] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M07_marked_dup_metrics.txt [2025-08-06 13:43:05,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M07_marked_dup_metrics.txt [2025-08-06 13:43:05,210] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M07_marked_dup_metrics.txt [2025-08-06 13:43:05,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M07_marked_dup_metrics.txt [2025-08-06 13:43:05,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M07_marked_dup_metrics.txt [2025-08-06 13:43:05,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M07_hist.pdf [2025-08-06 13:43:05,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:05,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:05,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:05,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:05,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:05,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,340] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,340] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,345] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,346] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,346] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,346] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,346] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:05,365] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,371] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,377] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,378] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:06,398] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M07_featureCounts.out [2025-08-06 13:43:07,298] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:07,301] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:07,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M07_metrics [2025-08-06 13:43:07,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M32_COMB_2.fq.gz [2025-08-06 13:43:07,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M32_COMB_1.fq.gz [2025-08-06 13:43:07,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,508] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,517] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:07,517] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M32_SJ.out.tab [2025-08-06 13:43:09,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M32_marked_dup_metrics.txt [2025-08-06 13:43:09,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M32_marked_dup_metrics.txt [2025-08-06 13:43:09,499] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M32_marked_dup_metrics.txt [2025-08-06 13:43:09,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M32_marked_dup_metrics.txt [2025-08-06 13:43:09,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M32_marked_dup_metrics.txt [2025-08-06 13:43:09,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M32_hist.pdf [2025-08-06 13:43:09,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:09,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:09,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:09,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:09,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:09,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,658] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,665] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:09,684] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,669] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:10,690] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M32_featureCounts.out [2025-08-06 13:43:11,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:11,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:11,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M32_metrics [2025-08-06 13:43:11,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M08_COMB_2.fq.gz [2025-08-06 13:43:11,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M08_COMB_1.fq.gz [2025-08-06 13:43:11,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,819] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,824] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,825] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:11,858] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M08_SJ.out.tab [2025-08-06 13:43:13,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M08_marked_dup_metrics.txt [2025-08-06 13:43:13,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M08_marked_dup_metrics.txt [2025-08-06 13:43:13,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M08_marked_dup_metrics.txt [2025-08-06 13:43:13,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M08_marked_dup_metrics.txt [2025-08-06 13:43:13,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M08_marked_dup_metrics.txt [2025-08-06 13:43:13,508] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:13,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:13,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:13,511] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:13,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:13,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M08_hist.pdf [2025-08-06 13:43:13,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:13,617] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,624] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,624] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,625] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,625] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,625] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,625] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,625] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:14,647] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M08_featureCounts.out [2025-08-06 13:43:15,595] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:15,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:15,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M08_metrics [2025-08-06 13:43:15,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M36_COMB_2.fq.gz [2025-08-06 13:43:15,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M36_COMB_1.fq.gz [2025-08-06 13:43:15,799] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,808] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,809] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:15,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M36_SJ.out.tab [2025-08-06 13:43:17,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M36_marked_dup_metrics.txt [2025-08-06 13:43:17,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M36_marked_dup_metrics.txt [2025-08-06 13:43:17,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M36_marked_dup_metrics.txt [2025-08-06 13:43:17,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M36_marked_dup_metrics.txt [2025-08-06 13:43:17,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M36_marked_dup_metrics.txt [2025-08-06 13:43:17,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M36_hist.pdf [2025-08-06 13:43:17,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:17,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:17,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:17,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:17,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:17,828] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,832] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,832] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,838] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,838] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,838] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,839] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:17,858] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,835] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:18,863] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M36_featureCounts.out [2025-08-06 13:43:19,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:19,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:19,818] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M36_metrics [2025-08-06 13:43:19,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M20_COMB_2.fq.gz [2025-08-06 13:43:19,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M20_COMB_1.fq.gz [2025-08-06 13:43:19,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,960] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,960] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,965] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,965] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,965] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,966] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,966] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,966] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,966] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,966] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:19,966] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M20_SJ.out.tab [2025-08-06 13:43:22,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M20_marked_dup_metrics.txt [2025-08-06 13:43:22,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M20_marked_dup_metrics.txt [2025-08-06 13:43:22,087] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M20_marked_dup_metrics.txt [2025-08-06 13:43:22,087] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M20_marked_dup_metrics.txt [2025-08-06 13:43:22,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M20_marked_dup_metrics.txt [2025-08-06 13:43:22,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:22,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:22,122] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:22,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:22,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:22,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M20_hist.pdf [2025-08-06 13:43:22,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:22,279] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,269] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,274] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,274] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,275] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,275] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,275] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,275] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:23,295] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M20_featureCounts.out [2025-08-06 13:43:24,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:24,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:24,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M20_metrics [2025-08-06 13:43:24,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M23_COMB_2.fq.gz [2025-08-06 13:43:24,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M23_COMB_1.fq.gz [2025-08-06 13:43:24,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,408] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:24,414] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M23_SJ.out.tab [2025-08-06 13:43:26,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M23_marked_dup_metrics.txt [2025-08-06 13:43:26,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M23_marked_dup_metrics.txt [2025-08-06 13:43:26,415] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M23_marked_dup_metrics.txt [2025-08-06 13:43:26,415] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M23_marked_dup_metrics.txt [2025-08-06 13:43:26,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M23_marked_dup_metrics.txt [2025-08-06 13:43:26,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:26,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:26,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:26,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:26,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:26,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M23_hist.pdf [2025-08-06 13:43:26,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,583] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:26,604] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,568] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,573] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,573] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,573] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,573] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,574] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,574] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,574] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:27,593] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M23_featureCounts.out [2025-08-06 13:43:28,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:28,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:28,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M23_metrics [2025-08-06 13:43:28,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M27_COMB_1.fq.gz [2025-08-06 13:43:28,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M27_COMB_2.fq.gz [2025-08-06 13:43:28,740] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,750] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:28,751] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G244_M27_SJ.out.tab [2025-08-06 13:43:30,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M27_marked_dup_metrics.txt [2025-08-06 13:43:30,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M27_marked_dup_metrics.txt [2025-08-06 13:43:30,580] multiqc [DEBUG ] File 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multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G244_M27_metrics [2025-08-06 13:43:30,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G244_M27_hist.pdf [2025-08-06 13:43:30,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G244_M27_featureCounts.out [2025-08-06 13:43:30,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G244_M27_featureCounts.out [2025-08-06 13:43:30,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G244_M27_featureCounts.out [2025-08-06 13:43:30,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G244_M27_featureCounts.out [2025-08-06 13:43:30,725] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G244_M27_featureCounts.out [2025-08-06 13:43:30,725] multiqc 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pattern filesize limit: Step_06_G244_RNASEQ_G244_M02.o9652484 [2025-08-06 13:43:56,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M02.o9652484 [2025-08-06 13:43:56,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M02.o9652484 [2025-08-06 13:43:56,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M02.o9652484 [2025-08-06 13:43:56,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M35.o9652518 [2025-08-06 13:43:56,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M35.o9652518 [2025-08-06 13:43:56,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M35.o9652518 [2025-08-06 13:43:56,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M35.o9652518 [2025-08-06 13:43:56,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M35.o9652518 [2025-08-06 13:43:56,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M13.o9652495 [2025-08-06 13:43:56,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M13.o9652495 [2025-08-06 13:43:56,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M13.o9652495 [2025-08-06 13:43:56,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M13.o9652495 [2025-08-06 13:43:56,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M13.o9652495 [2025-08-06 13:43:56,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M15.o9652497 [2025-08-06 13:43:56,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M15.o9652497 [2025-08-06 13:43:56,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M15.o9652497 [2025-08-06 13:43:56,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M15.o9652497 [2025-08-06 13:43:56,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M15.o9652497 [2025-08-06 13:43:56,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M24.o9652507 [2025-08-06 13:43:56,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M24.o9652507 [2025-08-06 13:43:56,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M24.o9652507 [2025-08-06 13:43:56,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M24.o9652507 [2025-08-06 13:43:56,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M24.o9652507 [2025-08-06 13:43:56,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M31.o9652514 [2025-08-06 13:43:56,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M31.o9652514 [2025-08-06 13:43:56,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M31.o9652514 [2025-08-06 13:43:56,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M31.o9652514 [2025-08-06 13:43:56,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M31.o9652514 [2025-08-06 13:43:56,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M01.o9652483 [2025-08-06 13:43:56,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M01.o9652483 [2025-08-06 13:43:56,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M01.o9652483 [2025-08-06 13:43:56,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M01.o9652483 [2025-08-06 13:43:56,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M01.o9652483 [2025-08-06 13:43:56,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M23.o9652506 [2025-08-06 13:43:56,921] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M23.o9652506 [2025-08-06 13:43:56,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M23.o9652506 [2025-08-06 13:43:56,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M23.o9652506 [2025-08-06 13:43:56,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M23.o9652506 [2025-08-06 13:43:56,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M33.o9652516 [2025-08-06 13:43:56,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M33.o9652516 [2025-08-06 13:43:56,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M33.o9652516 [2025-08-06 13:43:56,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M33.o9652516 [2025-08-06 13:43:56,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M33.o9652516 [2025-08-06 13:43:57,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M32.o9652515 [2025-08-06 13:43:57,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M32.o9652515 [2025-08-06 13:43:57,019] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M32.o9652515 [2025-08-06 13:43:57,019] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M32.o9652515 [2025-08-06 13:43:57,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M32.o9652515 [2025-08-06 13:43:57,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M11.o9652493 [2025-08-06 13:43:57,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M11.o9652493 [2025-08-06 13:43:57,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M11.o9652493 [2025-08-06 13:43:57,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M11.o9652493 [2025-08-06 13:43:57,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M11.o9652493 [2025-08-06 13:43:57,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M25.o9652508 [2025-08-06 13:43:57,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M25.o9652508 [2025-08-06 13:43:57,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M25.o9652508 [2025-08-06 13:43:57,120] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M25.o9652508 [2025-08-06 13:43:57,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M25.o9652508 [2025-08-06 13:43:57,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M04.o9652486 [2025-08-06 13:43:57,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M04.o9652486 [2025-08-06 13:43:57,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M04.o9652486 [2025-08-06 13:43:57,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M04.o9652486 [2025-08-06 13:43:57,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M04.o9652486 [2025-08-06 13:43:57,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M28.o9652511 [2025-08-06 13:43:57,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M28.o9652511 [2025-08-06 13:43:57,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M28.o9652511 [2025-08-06 13:43:57,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M28.o9652511 [2025-08-06 13:43:57,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M28.o9652511 [2025-08-06 13:43:57,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M29.o9652512 [2025-08-06 13:43:57,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M29.o9652512 [2025-08-06 13:43:57,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M29.o9652512 [2025-08-06 13:43:57,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M29.o9652512 [2025-08-06 13:43:57,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M29.o9652512 [2025-08-06 13:43:57,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M08.o9652490 [2025-08-06 13:43:57,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M08.o9652490 [2025-08-06 13:43:57,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M08.o9652490 [2025-08-06 13:43:57,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M08.o9652490 [2025-08-06 13:43:57,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G244_RNASEQ_G244_M08.o9652490 [2025-08-06 13:43:57,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-06 13:43:57,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-06 13:43:57,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-06 13:43:57,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-06 13:43:57,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-06 13:43:57,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-06 13:43:57,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-06 13:43:57,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,392] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,398] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:57,399] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 13:43:58,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 13:43:58,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 13:43:58,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 13:43:58,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 13:43:58,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 13:43:58,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 13:43:58,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 13:43:58,254] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 13:43:58,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 13:43:58,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 13:43:58,975] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-06 13:43:58,977] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-06 13:43:58,979] multiqc [DEBUG ] No samples found: custom_content [2025-08-06 13:43:58,984] multiqc [DEBUG ] No samples found: ccs [2025-08-06 13:43:58,990] multiqc [DEBUG ] No samples found: ngsderive [2025-08-06 13:43:58,995] multiqc [DEBUG ] No samples found: purple [2025-08-06 13:43:58,999] multiqc [DEBUG ] No samples found: conpair [2025-08-06 13:43:59,004] multiqc [DEBUG ] No samples found: lima [2025-08-06 13:43:59,009] multiqc [DEBUG ] No samples found: peddy [2025-08-06 13:43:59,016] multiqc [DEBUG ] No samples found: somalier [2025-08-06 13:43:59,023] multiqc [DEBUG ] No samples found: methylQA [2025-08-06 13:43:59,032] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-06 13:43:59,032] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-06 13:43:59,032] multiqc [DEBUG ] No samples found: mosdepth [2025-08-06 13:43:59,037] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-06 13:43:59,044] multiqc [DEBUG ] No samples found: qualimap [2025-08-06 13:43:59,051] multiqc [DEBUG ] No samples found: preseq [2025-08-06 13:43:59,057] multiqc [DEBUG ] No samples found: quast [2025-08-06 13:43:59,062] multiqc [DEBUG ] No samples found: qorts [2025-08-06 13:43:59,091] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-06 13:43:59,100] multiqc [DEBUG ] No samples found: rockhopper [2025-08-06 13:43:59,108] multiqc [DEBUG ] No samples found: rsem [2025-08-06 13:43:59,181] multiqc.modules.rseqc.rseqc [INFO ] Found 36 infer_experiment reports [2025-08-06 13:43:59,190] multiqc [DEBUG ] No samples found: busco [2025-08-06 13:43:59,195] multiqc [DEBUG ] No samples found: bustools [2025-08-06 13:43:59,200] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-06 13:43:59,207] multiqc [DEBUG ] No samples found: gffcompare [2025-08-06 13:43:59,214] multiqc [DEBUG ] No samples found: disambiguate [2025-08-06 13:43:59,219] multiqc [DEBUG ] No samples found: supernova [2025-08-06 13:43:59,236] multiqc [DEBUG ] No samples found: deeptools [2025-08-06 13:43:59,243] multiqc [DEBUG ] No samples found: sargasso [2025-08-06 13:43:59,248] multiqc [DEBUG ] No samples found: verifybamid [2025-08-06 13:43:59,254] multiqc [DEBUG ] No samples found: mirtrace [2025-08-06 13:43:59,258] multiqc [DEBUG ] No samples found: happy [2025-08-06 13:43:59,263] multiqc [DEBUG ] No samples found: mirtop [2025-08-06 13:43:59,269] multiqc [DEBUG ] No samples found: sambamba [2025-08-06 13:43:59,276] multiqc [DEBUG ] No samples found: homer [2025-08-06 13:43:59,280] multiqc [DEBUG ] No samples found: hops [2025-08-06 13:43:59,288] multiqc [DEBUG ] No samples found: macs2 [2025-08-06 13:43:59,294] multiqc [DEBUG ] No samples found: theta2 [2025-08-06 13:43:59,299] multiqc [DEBUG ] No samples found: snpeff [2025-08-06 13:43:59,307] multiqc [DEBUG ] No samples found: gatk [2025-08-06 13:43:59,313] multiqc [DEBUG ] No samples found: htseq [2025-08-06 13:43:59,320] multiqc [DEBUG ] No samples found: bcftools [2025-08-06 13:43:59,328] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M11_sorted [2025-08-06 13:43:59,331] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M15_sorted [2025-08-06 13:43:59,335] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M02_sorted [2025-08-06 13:43:59,338] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M30_sorted [2025-08-06 13:43:59,341] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M19_sorted [2025-08-06 13:43:59,344] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M03_sorted [2025-08-06 13:43:59,347] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M06_sorted [2025-08-06 13:43:59,350] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M31_sorted [2025-08-06 13:43:59,353] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M34_sorted [2025-08-06 13:43:59,356] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M35_sorted [2025-08-06 13:43:59,360] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M22_sorted [2025-08-06 13:43:59,362] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M26_sorted [2025-08-06 13:43:59,365] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M10_sorted [2025-08-06 13:43:59,368] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M13_sorted [2025-08-06 13:43:59,371] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M14_sorted [2025-08-06 13:43:59,374] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M17_sorted [2025-08-06 13:43:59,377] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M01_sorted [2025-08-06 13:43:59,380] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M18_sorted [2025-08-06 13:43:59,383] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M05_sorted [2025-08-06 13:43:59,385] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M33_sorted [2025-08-06 13:43:59,388] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M09_sorted [2025-08-06 13:43:59,391] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M21_sorted [2025-08-06 13:43:59,394] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M24_sorted [2025-08-06 13:43:59,397] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M25_sorted [2025-08-06 13:43:59,399] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M28_sorted [2025-08-06 13:43:59,401] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M12_sorted [2025-08-06 13:43:59,403] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M29_sorted [2025-08-06 13:43:59,406] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M16_sorted [2025-08-06 13:43:59,407] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M04_sorted [2025-08-06 13:43:59,409] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M07_sorted [2025-08-06 13:43:59,411] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M32_sorted [2025-08-06 13:43:59,412] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M08_sorted [2025-08-06 13:43:59,413] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M36_sorted [2025-08-06 13:43:59,414] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M20_sorted [2025-08-06 13:43:59,415] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M23_sorted [2025-08-06 13:43:59,416] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G244_M27_sorted [2025-08-06 13:43:59,416] multiqc.modules.featureCounts.feature_counts [INFO ] Found 36 reports [2025-08-06 13:43:59,433] multiqc [DEBUG ] No samples found: fgbio [2025-08-06 13:43:59,448] multiqc [DEBUG ] No samples found: dragen [2025-08-06 13:43:59,453] multiqc [DEBUG ] No samples found: dedup [2025-08-06 13:43:59,465] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-06 13:43:59,509] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-06 13:43:59,516] multiqc [DEBUG ] No samples found: jcvi [2025-08-06 13:43:59,522] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-06 13:44:01,004] multiqc.modules.picard.picard [INFO ] Found 36 InsertSizeMetrics reports [2025-08-06 13:44:01,046] multiqc.modules.picard.picard [INFO ] Found 36 MarkDuplicates reports [2025-08-06 13:44:01,128] multiqc.modules.picard.picard [INFO ] Found 36 RnaSeqMetrics reports [2025-08-06 13:44:01,133] multiqc [DEBUG ] No samples found: vep [2025-08-06 13:44:01,142] multiqc [DEBUG ] No samples found: sentieon [2025-08-06 13:44:01,148] multiqc [DEBUG ] No samples found: prokka [2025-08-06 13:44:01,155] multiqc [DEBUG ] No samples found: qc3C [2025-08-06 13:44:01,160] multiqc [DEBUG ] No samples found: nanostat [2025-08-06 13:44:01,167] multiqc [DEBUG ] No samples found: samblaster [2025-08-06 13:44:01,282] multiqc.modules.samtools.samtools [INFO ] Found 108 flagstat reports [2025-08-06 13:44:01,288] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-06 13:44:01,293] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-06 13:44:01,299] multiqc [DEBUG ] No samples found: bamtools [2025-08-06 13:44:01,304] multiqc [DEBUG ] No samples found: jellyfish [2025-08-06 13:44:01,312] multiqc [DEBUG ] No samples found: vcftools [2025-08-06 13:44:01,318] multiqc [DEBUG ] No samples found: longranger [2025-08-06 13:44:01,323] multiqc [DEBUG ] No samples found: stacks [2025-08-06 13:44:01,328] multiqc [DEBUG ] No samples found: varscan2 [2025-08-06 13:44:01,333] multiqc [DEBUG ] No samples found: snippy [2025-08-06 13:44:01,358] multiqc [DEBUG ] No samples found: bbmap [2025-08-06 13:44:01,366] multiqc [DEBUG ] No samples found: bismark [2025-08-06 13:44:01,373] multiqc [DEBUG ] No samples found: biscuit [2025-08-06 13:44:01,378] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-06 13:44:01,383] multiqc [DEBUG ] No samples found: hicup [2025-08-06 13:44:01,390] multiqc [DEBUG ] No samples found: hicpro [2025-08-06 13:44:01,396] multiqc [DEBUG ] No samples found: salmon [2025-08-06 13:44:01,401] multiqc [DEBUG ] No samples found: kallisto [2025-08-06 13:44:01,406] multiqc [DEBUG ] No samples found: slamdunk [2025-08-06 13:44:05,362] multiqc.modules.star.star [INFO ] Found 36 reports and 36 gene count files [2025-08-06 13:44:05,369] multiqc [DEBUG ] No samples found: hisat2 [2025-08-06 13:44:05,374] multiqc [DEBUG ] No samples found: tophat [2025-08-06 13:44:05,379] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-06 13:44:05,385] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-06 13:44:05,390] multiqc [DEBUG ] No samples found: snpsplit [2025-08-06 13:44:05,395] multiqc [DEBUG ] No samples found: odgi [2025-08-06 13:44:05,400] multiqc [DEBUG ] No samples found: pangolin [2025-08-06 13:44:05,405] multiqc [DEBUG ] No samples found: kat [2025-08-06 13:44:05,410] multiqc [DEBUG ] No samples found: leehom [2025-08-06 13:44:05,415] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-06 13:44:05,420] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-06 13:44:05,429] multiqc [DEBUG ] No samples found: cutadapt [2025-08-06 13:44:05,436] multiqc [DEBUG ] No samples found: flexbar [2025-08-06 13:44:05,441] multiqc [DEBUG ] No samples found: kaiju [2025-08-06 13:44:05,446] multiqc [DEBUG ] No samples found: kraken [2025-08-06 13:44:05,451] multiqc [DEBUG ] No samples found: malt [2025-08-06 13:44:05,458] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-06 13:44:05,464] multiqc [DEBUG ] No samples found: sickle [2025-08-06 13:44:05,469] multiqc [DEBUG ] No samples found: skewer [2025-08-06 13:44:05,475] multiqc [DEBUG ] No samples found: sortmerna [2025-08-06 13:44:05,480] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-06 13:44:05,485] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-06 13:44:05,490] multiqc [DEBUG ] No samples found: afterqc [2025-08-06 13:44:05,510] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,532] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,551] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,566] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,585] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,617] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,641] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,663] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,680] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,700] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,734] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,761] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,786] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,813] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,833] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,852] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,879] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,893] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,910] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,929] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,954] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,972] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:05,994] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,022] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,044] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,065] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,091] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,113] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,140] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,149] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,177] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,198] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,236] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,259] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,287] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,307] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 13:44:06,309] multiqc.modules.fastp.fastp [INFO ] Found 36 reports [2025-08-06 13:44:22,957] multiqc.modules.fastqc.fastqc [INFO ] Found 72 reports [2025-08-06 13:44:22,959] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-08-06 13:44:28,498] multiqc [DEBUG ] No samples found: pychopper [2025-08-06 13:44:28,503] multiqc [DEBUG ] No samples found: pycoqc [2025-08-06 13:44:28,509] multiqc [DEBUG ] No samples found: minionqc [2025-08-06 13:44:28,513] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-06 13:44:28,519] multiqc [DEBUG ] No samples found: clusterflow [2025-08-06 13:44:28,524] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-06 13:44:28,532] multiqc [DEBUG ] No samples found: bclconvert [2025-08-06 13:44:28,537] multiqc [DEBUG ] No samples found: interop [2025-08-06 13:44:28,542] multiqc [DEBUG ] No samples found: ivar [2025-08-06 13:44:28,546] multiqc [DEBUG ] No samples found: flash [2025-08-06 13:44:28,550] multiqc [DEBUG ] No samples found: seqyclean [2025-08-06 13:44:28,555] multiqc [DEBUG ] No samples found: optitype [2025-08-06 13:44:28,737] multiqc [INFO ] Compressing plot data [2025-08-06 13:44:32,645] multiqc [INFO ] Report : multiqc_report.html [2025-08-06 13:44:32,645] multiqc [INFO ] Data : multiqc_data [2025-08-06 13:44:32,645] multiqc [DEBUG ] Moving data file from '/scratch/tmp59k2ia_k/multiqc_data' to '/projectnb/wax-dk/max/G244_RNASEQ/Scripts/99_final_summary/G244_RNASEQ_multiqc_report/multiqc_data' [2025-08-06 13:44:32,918] multiqc [INFO ] MultiQC complete [2025-08-06 13:44:32,918] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers