[2025-08-06 15:01:11,660] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-06 15:01:11,660] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-06 15:01:11,660] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-08-06 15:01:11,661] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-06 15:01:11,663] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-06 15:01:11,663] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-06 15:01:11,664] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-06 15:01:11,664] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G245_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-06 15:01:12,161] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-06 15:01:12,162] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G245_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-06 15:01:12,162] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G245_RNASEQ/Scripts/99_final_summary/G245_RNASEQ_multiqc_report [2025-08-06 15:01:12,162] multiqc [DEBUG ] Template : default [2025-08-06 15:01:12,162] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-06 15:01:12,163] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-06 15:01:12,163] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpoucc1x09 [2025-08-06 15:01:12,238] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G245_RNASEQ/SAMPLES [2025-08-06 15:01:12,238] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC [2025-08-06 15:01:12,238] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G245_RNASEQ/Scripts/06_CollectMetrics [2025-08-06 15:01:12,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M16_COMB_2.fq.gz [2025-08-06 15:01:12,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M16_COMB_1.fq.gz [2025-08-06 15:01:12,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,959] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:12,964] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M16_SJ.out.tab [2025-08-06 15:01:14,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M16_marked_dup_metrics.txt [2025-08-06 15:01:14,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M16_marked_dup_metrics.txt [2025-08-06 15:01:14,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M16_marked_dup_metrics.txt [2025-08-06 15:01:14,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M16_marked_dup_metrics.txt [2025-08-06 15:01:14,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M16_marked_dup_metrics.txt [2025-08-06 15:01:14,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M16_hist.pdf [2025-08-06 15:01:14,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:14,921] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:14,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:14,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:14,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:14,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,002] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,007] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,024] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,942] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,946] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,947] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:15,965] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M16_featureCounts.out [2025-08-06 15:01:16,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:16,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:16,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M16_metrics [2025-08-06 15:01:16,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M14_COMB_1.fq.gz [2025-08-06 15:01:16,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M14_COMB_2.fq.gz [2025-08-06 15:01:17,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,031] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:17,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M14_SJ.out.tab [2025-08-06 15:01:19,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M14_marked_dup_metrics.txt [2025-08-06 15:01:19,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M14_marked_dup_metrics.txt [2025-08-06 15:01:19,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M14_marked_dup_metrics.txt [2025-08-06 15:01:19,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M14_marked_dup_metrics.txt [2025-08-06 15:01:19,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M14_marked_dup_metrics.txt [2025-08-06 15:01:19,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M14_hist.pdf [2025-08-06 15:01:19,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:19,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:19,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:19,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:19,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:19,221] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:19,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,180] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,180] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,181] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,185] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,186] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:20,204] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M14_featureCounts.out [2025-08-06 15:01:21,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:21,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:21,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M14_metrics [2025-08-06 15:01:21,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M06_COMB_2.fq.gz [2025-08-06 15:01:21,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M06_COMB_1.fq.gz [2025-08-06 15:01:21,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:21,294] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M06_SJ.out.tab [2025-08-06 15:01:23,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M06_marked_dup_metrics.txt [2025-08-06 15:01:23,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M06_marked_dup_metrics.txt [2025-08-06 15:01:23,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M06_marked_dup_metrics.txt [2025-08-06 15:01:23,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M06_marked_dup_metrics.txt [2025-08-06 15:01:23,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M06_marked_dup_metrics.txt [2025-08-06 15:01:23,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M06_hist.pdf [2025-08-06 15:01:23,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:23,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:23,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:23,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:23,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:23,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,428] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:23,448] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,389] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:24,409] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M06_featureCounts.out [2025-08-06 15:01:25,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:25,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:25,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M06_metrics [2025-08-06 15:01:25,343] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M11_COMB_2.fq.gz [2025-08-06 15:01:25,343] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M11_COMB_1.fq.gz [2025-08-06 15:01:25,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,486] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,491] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,491] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,492] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:25,492] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M11_SJ.out.tab [2025-08-06 15:01:27,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M11_marked_dup_metrics.txt [2025-08-06 15:01:27,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M11_marked_dup_metrics.txt [2025-08-06 15:01:27,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M11_marked_dup_metrics.txt [2025-08-06 15:01:27,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M11_marked_dup_metrics.txt [2025-08-06 15:01:27,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M11_marked_dup_metrics.txt [2025-08-06 15:01:27,405] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M11_hist.pdf [2025-08-06 15:01:27,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:27,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:27,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:27,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:27,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:27,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,514] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:27,533] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,486] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:28,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M11_featureCounts.out [2025-08-06 15:01:29,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:29,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:29,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M11_metrics [2025-08-06 15:01:29,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M10_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:01:29,495] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M10_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:01:29,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,564] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:29,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,554] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,554] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,554] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,555] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,555] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,555] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,555] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:30,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M10_featureCounts.out [2025-08-06 15:01:31,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M04_COMB_2.fq.gz [2025-08-06 15:01:31,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M04_COMB_1.fq.gz [2025-08-06 15:01:31,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,723] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,723] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:31,729] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M04_SJ.out.tab [2025-08-06 15:01:33,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M04_marked_dup_metrics.txt [2025-08-06 15:01:33,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M04_marked_dup_metrics.txt [2025-08-06 15:01:33,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M04_marked_dup_metrics.txt [2025-08-06 15:01:33,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M04_marked_dup_metrics.txt [2025-08-06 15:01:33,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M04_marked_dup_metrics.txt [2025-08-06 15:01:33,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M04_hist.pdf [2025-08-06 15:01:33,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:33,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:33,703] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:33,703] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:33,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:33,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,791] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,791] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:33,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,719] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,731] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:34,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M04_featureCounts.out [2025-08-06 15:01:35,652] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:35,655] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:35,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M04_metrics [2025-08-06 15:01:35,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M14_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:01:35,700] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M14_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:01:35,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,766] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,771] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:35,791] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,724] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,732] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,732] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,732] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,733] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,733] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,733] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,733] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:36,752] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M14_featureCounts.out [2025-08-06 15:01:37,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M15_COMB_1.fq.gz [2025-08-06 15:01:37,695] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M15_COMB_2.fq.gz [2025-08-06 15:01:37,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,849] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:37,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M15_SJ.out.tab [2025-08-06 15:01:39,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M15_marked_dup_metrics.txt [2025-08-06 15:01:39,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M15_marked_dup_metrics.txt [2025-08-06 15:01:39,706] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M15_marked_dup_metrics.txt [2025-08-06 15:01:39,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M15_marked_dup_metrics.txt [2025-08-06 15:01:39,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M15_marked_dup_metrics.txt [2025-08-06 15:01:39,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M15_hist.pdf [2025-08-06 15:01:39,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:39,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:39,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:39,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:39,739] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:39,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,819] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:39,843] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,780] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:40,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M15_featureCounts.out [2025-08-06 15:01:41,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:41,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:41,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M15_metrics [2025-08-06 15:01:41,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M01_COMB_1.fq.gz [2025-08-06 15:01:41,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M01_COMB_2.fq.gz [2025-08-06 15:01:41,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,867] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,867] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,867] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,867] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,867] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,868] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,868] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,868] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:41,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M01_SJ.out.tab [2025-08-06 15:01:43,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M01_marked_dup_metrics.txt [2025-08-06 15:01:43,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M01_marked_dup_metrics.txt [2025-08-06 15:01:43,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M01_marked_dup_metrics.txt [2025-08-06 15:01:43,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M01_marked_dup_metrics.txt [2025-08-06 15:01:43,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M01_marked_dup_metrics.txt [2025-08-06 15:01:43,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M01_hist.pdf [2025-08-06 15:01:43,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:43,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:43,830] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:43,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:43,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:43,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,922] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,928] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:43,947] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,864] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,864] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,870] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,870] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,871] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,871] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:44,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M01_featureCounts.out [2025-08-06 15:01:45,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:45,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:45,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M01_metrics [2025-08-06 15:01:45,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M11_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:01:45,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M11_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:01:45,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,882] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:45,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,809] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:46,833] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M11_featureCounts.out [2025-08-06 15:01:47,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M09_COMB_2.fq.gz [2025-08-06 15:01:47,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M09_COMB_1.fq.gz [2025-08-06 15:01:47,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,787] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,787] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:47,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M09_SJ.out.tab [2025-08-06 15:01:49,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M09_marked_dup_metrics.txt [2025-08-06 15:01:49,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M09_marked_dup_metrics.txt [2025-08-06 15:01:49,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M09_marked_dup_metrics.txt [2025-08-06 15:01:49,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M09_marked_dup_metrics.txt [2025-08-06 15:01:49,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M09_marked_dup_metrics.txt [2025-08-06 15:01:49,917] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M09_hist.pdf [2025-08-06 15:01:49,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:49,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:49,934] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:49,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:49,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:50,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,020] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,037] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,954] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,960] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,960] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,961] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,961] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,961] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,961] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,961] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:50,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M09_featureCounts.out [2025-08-06 15:01:51,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:51,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:51,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M09_metrics [2025-08-06 15:01:51,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M03_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:01:51,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M03_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:01:51,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:51,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,014] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,917] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,920] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,926] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:52,944] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M03_featureCounts.out [2025-08-06 15:01:53,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M07_COMB_2.fq.gz [2025-08-06 15:01:53,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M07_COMB_1.fq.gz [2025-08-06 15:01:53,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,991] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,992] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,992] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,992] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,992] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:53,992] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M07_SJ.out.tab [2025-08-06 15:01:56,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M07_marked_dup_metrics.txt [2025-08-06 15:01:56,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M07_marked_dup_metrics.txt [2025-08-06 15:01:56,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M07_marked_dup_metrics.txt [2025-08-06 15:01:56,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M07_marked_dup_metrics.txt [2025-08-06 15:01:56,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M07_marked_dup_metrics.txt [2025-08-06 15:01:56,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:56,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:56,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:56,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:56,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:56,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M07_hist.pdf [2025-08-06 15:01:56,243] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:56,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,189] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,194] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:57,212] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M07_featureCounts.out [2025-08-06 15:01:58,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:58,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:58,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M07_metrics [2025-08-06 15:01:58,146] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M15_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:01:58,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M15_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:01:58,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,201] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,207] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:58,225] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,151] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,151] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,151] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,152] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,152] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,152] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,152] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:01:59,170] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M15_featureCounts.out [2025-08-06 15:02:00,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M12_COMB_2.fq.gz [2025-08-06 15:02:00,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M12_COMB_1.fq.gz [2025-08-06 15:02:00,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,177] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:00,183] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M12_SJ.out.tab [2025-08-06 15:02:02,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M12_marked_dup_metrics.txt [2025-08-06 15:02:02,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M12_marked_dup_metrics.txt [2025-08-06 15:02:02,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M12_marked_dup_metrics.txt [2025-08-06 15:02:02,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M12_marked_dup_metrics.txt [2025-08-06 15:02:02,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M12_marked_dup_metrics.txt [2025-08-06 15:02:02,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:02,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:02,221] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:02,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:02,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:02,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M12_hist.pdf [2025-08-06 15:02:02,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,311] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:02,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:03,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M12_featureCounts.out [2025-08-06 15:02:04,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:04,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:04,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M12_metrics [2025-08-06 15:02:04,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M10_COMB_1.fq.gz [2025-08-06 15:02:04,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M10_COMB_2.fq.gz [2025-08-06 15:02:04,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,260] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:04,265] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M10_SJ.out.tab [2025-08-06 15:02:06,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M10_marked_dup_metrics.txt [2025-08-06 15:02:06,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M10_marked_dup_metrics.txt [2025-08-06 15:02:06,354] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M10_marked_dup_metrics.txt [2025-08-06 15:02:06,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M10_marked_dup_metrics.txt [2025-08-06 15:02:06,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M10_marked_dup_metrics.txt [2025-08-06 15:02:06,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M10_hist.pdf [2025-08-06 15:02:06,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:06,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:06,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:06,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:06,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:06,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:06,576] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,511] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,511] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,511] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,511] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,511] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,512] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,512] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:07,532] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M10_featureCounts.out [2025-08-06 15:02:08,417] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:08,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:08,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M10_metrics [2025-08-06 15:02:08,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M12_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:08,479] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M12_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:08,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,564] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,564] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,564] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:08,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,516] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,521] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:09,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M12_featureCounts.out [2025-08-06 15:02:10,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M04_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:10,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M04_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:10,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,508] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:10,527] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,467] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,468] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:11,486] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M04_featureCounts.out [2025-08-06 15:02:12,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M02_COMB_2.fq.gz [2025-08-06 15:02:12,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M02_COMB_1.fq.gz [2025-08-06 15:02:12,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:12,488] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M02_SJ.out.tab [2025-08-06 15:02:14,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M02_marked_dup_metrics.txt [2025-08-06 15:02:14,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M02_marked_dup_metrics.txt [2025-08-06 15:02:14,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M02_marked_dup_metrics.txt [2025-08-06 15:02:14,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M02_marked_dup_metrics.txt [2025-08-06 15:02:14,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M02_marked_dup_metrics.txt [2025-08-06 15:02:14,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M02_hist.pdf [2025-08-06 15:02:14,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:14,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:14,561] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:14,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:14,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:14,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:14,702] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,631] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,636] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:15,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M02_featureCounts.out [2025-08-06 15:02:16,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:16,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:16,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M02_metrics [2025-08-06 15:02:16,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M16_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:16,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M16_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:16,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:16,686] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,633] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,634] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:17,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M16_featureCounts.out [2025-08-06 15:02:18,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M01_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:18,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M01_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:18,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,631] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,631] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:18,649] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,580] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,604] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:19,628] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M01_featureCounts.out [2025-08-06 15:02:20,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M13_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:20,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M13_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:20,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,643] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:20,667] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,611] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,611] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,611] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:21,630] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M13_featureCounts.out [2025-08-06 15:02:22,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M08_COMB_1.fq.gz [2025-08-06 15:02:22,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M08_COMB_2.fq.gz [2025-08-06 15:02:22,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,651] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,651] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,651] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,651] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,651] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,652] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,652] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,652] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:22,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M08_SJ.out.tab [2025-08-06 15:02:24,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M08_marked_dup_metrics.txt [2025-08-06 15:02:24,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M08_marked_dup_metrics.txt [2025-08-06 15:02:24,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M08_marked_dup_metrics.txt [2025-08-06 15:02:24,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M08_marked_dup_metrics.txt [2025-08-06 15:02:24,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M08_marked_dup_metrics.txt [2025-08-06 15:02:24,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:24,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:24,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:24,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:24,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:24,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M08_hist.pdf [2025-08-06 15:02:24,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,657] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,661] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:24,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:25,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M08_featureCounts.out [2025-08-06 15:02:26,508] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:26,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:26,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M08_metrics [2025-08-06 15:02:26,568] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M13_COMB_1.fq.gz [2025-08-06 15:02:26,571] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M13_COMB_2.fq.gz [2025-08-06 15:02:26,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,674] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:26,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M13_SJ.out.tab [2025-08-06 15:02:28,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M13_marked_dup_metrics.txt [2025-08-06 15:02:28,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M13_marked_dup_metrics.txt [2025-08-06 15:02:28,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M13_marked_dup_metrics.txt [2025-08-06 15:02:28,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M13_marked_dup_metrics.txt [2025-08-06 15:02:28,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M13_marked_dup_metrics.txt [2025-08-06 15:02:28,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:28,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:28,688] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:28,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:28,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:28,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M13_hist.pdf [2025-08-06 15:02:28,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,789] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,789] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,794] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:28,813] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,752] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:29,772] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M13_featureCounts.out [2025-08-06 15:02:30,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:30,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:30,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M13_metrics [2025-08-06 15:02:30,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M05_COMB_1.fq.gz [2025-08-06 15:02:30,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M05_COMB_2.fq.gz [2025-08-06 15:02:30,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:30,836] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M05_SJ.out.tab [2025-08-06 15:02:32,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M05_marked_dup_metrics.txt [2025-08-06 15:02:32,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M05_marked_dup_metrics.txt [2025-08-06 15:02:32,884] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M05_marked_dup_metrics.txt [2025-08-06 15:02:32,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M05_marked_dup_metrics.txt [2025-08-06 15:02:32,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M05_marked_dup_metrics.txt [2025-08-06 15:02:32,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:32,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:32,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:32,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:32,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:32,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M05_hist.pdf [2025-08-06 15:02:33,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,009] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,009] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,010] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,010] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,010] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,010] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,010] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,028] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,954] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,960] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:33,979] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M05_featureCounts.out [2025-08-06 15:02:34,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:34,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:34,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M05_metrics [2025-08-06 15:02:34,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M02_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:34,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M02_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:35,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,009] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,027] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,949] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,950] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:35,968] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M02_featureCounts.out [2025-08-06 15:02:36,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M09_CKDL240031680-1A_22T3CYLT3_L4_1.fq.gz [2025-08-06 15:02:36,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G232_M09_CKDL240031680-1A_22T3CYLT3_L4_2.fq.gz [2025-08-06 15:02:36,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,953] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:36,976] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:37,922] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G232_M09_featureCounts.out [2025-08-06 15:02:38,849] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M03_COMB_2.fq.gz [2025-08-06 15:02:38,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M03_COMB_1.fq.gz [2025-08-06 15:02:38,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:38,995] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M03_SJ.out.tab [2025-08-06 15:02:40,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M03_marked_dup_metrics.txt [2025-08-06 15:02:40,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M03_marked_dup_metrics.txt [2025-08-06 15:02:40,913] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M03_marked_dup_metrics.txt [2025-08-06 15:02:40,913] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M03_marked_dup_metrics.txt [2025-08-06 15:02:40,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M03_marked_dup_metrics.txt [2025-08-06 15:02:40,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G245_M03_hist.pdf [2025-08-06 15:02:40,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:40,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:40,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:40,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:40,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:41,054] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,057] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,057] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,057] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,061] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,061] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:41,061] 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[DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:42,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:42,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:42,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:42,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:42,018] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G245_M03_featureCounts.out [2025-08-06 15:02:42,907] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:42,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:42,914] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G245_M03_metrics [2025-08-06 15:02:42,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-06 15:02:42,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-06 15:02:42,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-06 15:02:42,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-06 15:02:42,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search 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] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M08.o9651646 [2025-08-06 15:02:43,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M03.o9651641 [2025-08-06 15:02:43,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M03.o9651641 [2025-08-06 15:02:43,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M03.o9651641 [2025-08-06 15:02:43,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M01.o9651639 [2025-08-06 15:02:43,268] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M01.o9651639 [2025-08-06 15:02:43,272] multiqc [DEBUG ] File ignored by 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because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M11.o9651649 [2025-08-06 15:02:43,370] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M14.o9651652 [2025-08-06 15:02:43,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M14.o9651652 [2025-08-06 15:02:43,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M14.o9651652 [2025-08-06 15:02:43,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M16.o9651654 [2025-08-06 15:02:43,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G245_RNASEQ_G245_M16.o9651654 [2025-08-06 15:02:43,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search 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[2025-08-06 15:02:43,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-08-06 15:02:43,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,006] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,042] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,042] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,042] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,042] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,042] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-06 15:02:44,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern 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because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M06.o9652792 [2025-08-06 15:02:54,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M06.o9652792 [2025-08-06 15:02:54,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M14.o9652800 [2025-08-06 15:02:54,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M14.o9652800 [2025-08-06 15:02:54,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M14.o9652800 [2025-08-06 15:02:54,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M14.o9652800 [2025-08-06 15:02:54,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M14.o9652800 [2025-08-06 15:02:54,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M05.o9652791 [2025-08-06 15:02:54,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M05.o9652791 [2025-08-06 15:02:54,209] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M05.o9652791 [2025-08-06 15:02:54,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M05.o9652791 [2025-08-06 15:02:54,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M05.o9652791 [2025-08-06 15:02:54,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M12.o9652798 [2025-08-06 15:02:54,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M12.o9652798 [2025-08-06 15:02:54,233] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M12.o9652798 [2025-08-06 15:02:54,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M12.o9652798 [2025-08-06 15:02:54,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M12.o9652798 [2025-08-06 15:02:54,256] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M16.o9652802 [2025-08-06 15:02:54,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M16.o9652802 [2025-08-06 15:02:54,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M16.o9652802 [2025-08-06 15:02:54,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M16.o9652802 [2025-08-06 15:02:54,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M16.o9652802 [2025-08-06 15:02:54,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M10.o9652796 [2025-08-06 15:02:54,319] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M10.o9652796 [2025-08-06 15:02:54,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M10.o9652796 [2025-08-06 15:02:54,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M10.o9652796 [2025-08-06 15:02:54,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M10.o9652796 [2025-08-06 15:02:54,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M13.o9652799 [2025-08-06 15:02:54,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M13.o9652799 [2025-08-06 15:02:54,365] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M13.o9652799 [2025-08-06 15:02:54,365] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M13.o9652799 [2025-08-06 15:02:54,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M13.o9652799 [2025-08-06 15:02:54,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M09.o9652795 [2025-08-06 15:02:54,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M09.o9652795 [2025-08-06 15:02:54,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M09.o9652795 [2025-08-06 15:02:54,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M09.o9652795 [2025-08-06 15:02:54,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M09.o9652795 [2025-08-06 15:02:54,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M02.o9652788 [2025-08-06 15:02:54,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M02.o9652788 [2025-08-06 15:02:54,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M02.o9652788 [2025-08-06 15:02:54,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M02.o9652788 [2025-08-06 15:02:54,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M02.o9652788 [2025-08-06 15:02:54,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M04.o9652790 [2025-08-06 15:02:54,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M04.o9652790 [2025-08-06 15:02:54,474] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M04.o9652790 [2025-08-06 15:02:54,474] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M04.o9652790 [2025-08-06 15:02:54,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M04.o9652790 [2025-08-06 15:02:54,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M03.o9652789 [2025-08-06 15:02:54,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M03.o9652789 [2025-08-06 15:02:54,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M03.o9652789 [2025-08-06 15:02:54,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M03.o9652789 [2025-08-06 15:02:54,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M03.o9652789 [2025-08-06 15:02:54,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M01.o9652787 [2025-08-06 15:02:54,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M01.o9652787 [2025-08-06 15:02:54,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M01.o9652787 [2025-08-06 15:02:54,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M01.o9652787 [2025-08-06 15:02:54,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M01.o9652787 [2025-08-06 15:02:54,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M15.o9652801 [2025-08-06 15:02:54,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M15.o9652801 [2025-08-06 15:02:54,560] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M15.o9652801 [2025-08-06 15:02:54,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M15.o9652801 [2025-08-06 15:02:54,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M15.o9652801 [2025-08-06 15:02:54,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M07.o9652793 [2025-08-06 15:02:54,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M07.o9652793 [2025-08-06 15:02:54,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M07.o9652793 [2025-08-06 15:02:54,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M07.o9652793 [2025-08-06 15:02:54,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M07.o9652793 [2025-08-06 15:02:54,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M08.o9652794 [2025-08-06 15:02:54,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M08.o9652794 [2025-08-06 15:02:54,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M08.o9652794 [2025-08-06 15:02:54,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M08.o9652794 [2025-08-06 15:02:54,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M08.o9652794 [2025-08-06 15:02:54,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M11.o9652797 [2025-08-06 15:02:54,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M11.o9652797 [2025-08-06 15:02:54,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M11.o9652797 [2025-08-06 15:02:54,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M11.o9652797 [2025-08-06 15:02:54,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G245_RNASEQ_G245_M11.o9652797 [2025-08-06 15:02:54,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-06 15:02:54,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-06 15:02:54,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-06 15:02:54,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-06 15:02:54,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-06 15:02:54,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,718] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,718] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,724] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:54,725] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-06 15:02:55,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 15:02:55,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 15:02:55,532] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 15:02:55,532] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 15:02:55,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-06 15:02:55,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 15:02:55,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 15:02:55,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 15:02:55,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 15:02:55,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-06 15:02:56,222] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-06 15:02:56,223] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-06 15:02:56,240] multiqc [DEBUG ] No samples found: custom_content [2025-08-06 15:02:56,247] multiqc [DEBUG ] No samples found: ccs [2025-08-06 15:02:56,252] multiqc [DEBUG ] No samples found: ngsderive [2025-08-06 15:02:56,257] multiqc [DEBUG ] No samples found: purple [2025-08-06 15:02:56,261] multiqc [DEBUG ] No samples found: conpair [2025-08-06 15:02:56,267] multiqc [DEBUG ] No samples found: lima [2025-08-06 15:02:56,271] multiqc [DEBUG ] No samples found: peddy [2025-08-06 15:02:56,276] multiqc [DEBUG ] No samples found: somalier [2025-08-06 15:02:56,280] multiqc [DEBUG ] No samples found: methylQA [2025-08-06 15:02:56,289] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-06 15:02:56,289] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-06 15:02:56,289] multiqc [DEBUG ] No samples found: mosdepth [2025-08-06 15:02:56,294] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-06 15:02:56,297] multiqc [DEBUG ] No samples found: qualimap [2025-08-06 15:02:56,301] multiqc [DEBUG ] No samples found: preseq [2025-08-06 15:02:56,306] multiqc [DEBUG ] No samples found: quast [2025-08-06 15:02:56,311] multiqc [DEBUG ] No samples found: qorts [2025-08-06 15:02:56,315] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-06 15:02:56,319] multiqc [DEBUG ] No samples found: rockhopper [2025-08-06 15:02:56,324] multiqc [DEBUG ] No samples found: rsem [2025-08-06 15:02:56,372] multiqc.modules.rseqc.rseqc [INFO ] Found 28 infer_experiment reports [2025-08-06 15:02:56,390] multiqc [DEBUG ] No samples found: busco [2025-08-06 15:02:56,396] multiqc [DEBUG ] No samples found: bustools [2025-08-06 15:02:56,401] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-06 15:02:56,406] multiqc [DEBUG ] No samples found: gffcompare [2025-08-06 15:02:56,410] multiqc [DEBUG ] No samples found: disambiguate [2025-08-06 15:02:56,415] multiqc [DEBUG ] No samples found: supernova [2025-08-06 15:02:56,428] multiqc [DEBUG ] No samples found: deeptools [2025-08-06 15:02:56,433] multiqc [DEBUG ] No samples found: sargasso [2025-08-06 15:02:56,437] multiqc [DEBUG ] No samples found: verifybamid [2025-08-06 15:02:56,442] multiqc [DEBUG ] No samples found: mirtrace [2025-08-06 15:02:56,446] multiqc [DEBUG ] No samples found: happy [2025-08-06 15:02:56,451] multiqc [DEBUG ] No samples found: mirtop [2025-08-06 15:02:56,456] multiqc [DEBUG ] No samples found: sambamba [2025-08-06 15:02:56,462] multiqc [DEBUG ] No samples found: homer [2025-08-06 15:02:56,467] multiqc [DEBUG ] No samples found: hops [2025-08-06 15:02:56,471] multiqc [DEBUG ] No samples found: macs2 [2025-08-06 15:02:56,476] multiqc [DEBUG ] No samples found: theta2 [2025-08-06 15:02:56,480] multiqc [DEBUG ] No samples found: snpeff [2025-08-06 15:02:56,487] multiqc [DEBUG ] No samples found: gatk [2025-08-06 15:02:56,491] multiqc [DEBUG ] No samples found: htseq [2025-08-06 15:02:56,497] multiqc [DEBUG ] No samples found: bcftools [2025-08-06 15:02:56,504] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M16_sorted [2025-08-06 15:02:56,506] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M14_sorted [2025-08-06 15:02:56,509] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M06_sorted [2025-08-06 15:02:56,513] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M11_sorted [2025-08-06 15:02:56,518] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M10_sorted [2025-08-06 15:02:56,522] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M04_sorted [2025-08-06 15:02:56,525] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M14_sorted [2025-08-06 15:02:56,528] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M15_sorted [2025-08-06 15:02:56,531] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M01_sorted [2025-08-06 15:02:56,534] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M11_sorted [2025-08-06 15:02:56,537] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M09_sorted [2025-08-06 15:02:56,540] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M03_sorted [2025-08-06 15:02:56,543] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M07_sorted [2025-08-06 15:02:56,544] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M15_sorted [2025-08-06 15:02:56,547] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M12_sorted [2025-08-06 15:02:56,550] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M10_sorted [2025-08-06 15:02:56,552] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M12_sorted [2025-08-06 15:02:56,554] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M04_sorted [2025-08-06 15:02:56,555] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M02_sorted [2025-08-06 15:02:56,556] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M16_sorted [2025-08-06 15:02:56,558] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M01_sorted [2025-08-06 15:02:56,559] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M13_sorted [2025-08-06 15:02:56,561] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M08_sorted [2025-08-06 15:02:56,562] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M13_sorted [2025-08-06 15:02:56,563] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M05_sorted [2025-08-06 15:02:56,564] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M02_sorted [2025-08-06 15:02:56,566] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G232_M09_sorted [2025-08-06 15:02:56,566] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G245_M03_sorted [2025-08-06 15:02:56,567] multiqc.modules.featureCounts.feature_counts [INFO ] Found 28 reports [2025-08-06 15:02:56,579] multiqc [DEBUG ] No samples found: fgbio [2025-08-06 15:02:56,591] multiqc [DEBUG ] No samples found: dragen [2025-08-06 15:02:56,595] multiqc [DEBUG ] No samples found: dedup [2025-08-06 15:02:56,600] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-06 15:02:56,626] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-06 15:02:56,632] multiqc [DEBUG ] No samples found: jcvi [2025-08-06 15:02:56,638] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-06 15:02:57,295] multiqc.modules.picard.picard [INFO ] Found 16 InsertSizeMetrics reports [2025-08-06 15:02:57,312] multiqc.modules.picard.picard [INFO ] Found 16 MarkDuplicates reports [2025-08-06 15:02:57,343] multiqc.modules.picard.picard [INFO ] Found 16 RnaSeqMetrics reports [2025-08-06 15:02:57,348] multiqc [DEBUG ] No samples found: vep [2025-08-06 15:02:57,355] multiqc [DEBUG ] No samples found: sentieon [2025-08-06 15:02:57,360] multiqc [DEBUG ] No samples found: prokka [2025-08-06 15:02:57,364] multiqc [DEBUG ] No samples found: qc3C [2025-08-06 15:02:57,369] multiqc [DEBUG ] No samples found: nanostat [2025-08-06 15:02:57,374] multiqc [DEBUG ] No samples found: samblaster [2025-08-06 15:02:57,391] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,396] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,398] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,402] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,403] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,407] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,409] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,412] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,415] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,418] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,420] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,421] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,425] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,427] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,430] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,432] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,434] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,434] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,437] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,438] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,438] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,440] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,442] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,445] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,447] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,447] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,448] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-06 15:02:57,453] multiqc.modules.samtools.samtools [INFO ] Found 49 flagstat reports [2025-08-06 15:02:57,458] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-06 15:02:57,462] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-06 15:02:57,467] multiqc [DEBUG ] No samples found: bamtools [2025-08-06 15:02:57,472] multiqc [DEBUG ] No samples found: jellyfish [2025-08-06 15:02:57,479] multiqc [DEBUG ] No samples found: vcftools [2025-08-06 15:02:57,484] multiqc [DEBUG ] No samples found: longranger [2025-08-06 15:02:57,488] multiqc [DEBUG ] No samples found: stacks [2025-08-06 15:02:57,493] multiqc [DEBUG ] No samples found: varscan2 [2025-08-06 15:02:57,497] multiqc [DEBUG ] No samples found: snippy [2025-08-06 15:02:57,512] multiqc [DEBUG ] No samples found: bbmap [2025-08-06 15:02:57,517] multiqc [DEBUG ] No samples found: bismark [2025-08-06 15:02:57,523] multiqc [DEBUG ] No samples found: biscuit [2025-08-06 15:02:57,527] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-06 15:02:57,532] multiqc [DEBUG ] No samples found: hicup [2025-08-06 15:02:57,536] multiqc [DEBUG ] No samples found: hicpro [2025-08-06 15:02:57,541] multiqc [DEBUG ] No samples found: salmon [2025-08-06 15:02:57,545] multiqc [DEBUG ] No samples found: kallisto [2025-08-06 15:02:57,550] multiqc [DEBUG ] No samples found: slamdunk [2025-08-06 15:02:59,153] multiqc.modules.star.star [INFO ] Found 16 reports and 16 gene count files [2025-08-06 15:02:59,161] multiqc [DEBUG ] No samples found: hisat2 [2025-08-06 15:02:59,166] multiqc [DEBUG ] No samples found: tophat [2025-08-06 15:02:59,170] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-06 15:02:59,175] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-06 15:02:59,179] multiqc [DEBUG ] No samples found: snpsplit [2025-08-06 15:02:59,184] multiqc [DEBUG ] No samples found: odgi [2025-08-06 15:02:59,188] multiqc [DEBUG ] No samples found: pangolin [2025-08-06 15:02:59,193] multiqc [DEBUG ] No samples found: kat [2025-08-06 15:02:59,197] multiqc [DEBUG ] No samples found: leehom [2025-08-06 15:02:59,202] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-06 15:02:59,207] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-06 15:02:59,211] multiqc [DEBUG ] No samples found: cutadapt [2025-08-06 15:02:59,216] multiqc [DEBUG ] No samples found: flexbar [2025-08-06 15:02:59,221] multiqc [DEBUG ] No samples found: kaiju [2025-08-06 15:02:59,226] multiqc [DEBUG ] No samples found: kraken [2025-08-06 15:02:59,236] multiqc [DEBUG ] No samples found: malt [2025-08-06 15:02:59,244] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-06 15:02:59,251] multiqc [DEBUG ] No samples found: sickle [2025-08-06 15:02:59,256] multiqc [DEBUG ] No samples found: skewer [2025-08-06 15:02:59,260] multiqc [DEBUG ] No samples found: sortmerna [2025-08-06 15:02:59,265] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-06 15:02:59,270] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-06 15:02:59,275] multiqc [DEBUG ] No samples found: afterqc [2025-08-06 15:02:59,308] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,325] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,340] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,357] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,372] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,396] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,408] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,427] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,440] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,460] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,484] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,500] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,524] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,546] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,563] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,581] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-06 15:02:59,582] multiqc.modules.fastp.fastp [INFO ] Found 16 reports [2025-08-06 15:03:06,609] multiqc.modules.fastqc.fastqc [INFO ] Found 32 reports [2025-08-06 15:03:06,610] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-08-06 15:03:08,509] multiqc [DEBUG ] No samples found: pychopper [2025-08-06 15:03:08,513] multiqc [DEBUG ] No samples found: pycoqc [2025-08-06 15:03:08,518] multiqc [DEBUG ] No samples found: minionqc [2025-08-06 15:03:08,522] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-06 15:03:08,527] multiqc [DEBUG ] No samples found: clusterflow [2025-08-06 15:03:08,531] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-06 15:03:08,536] multiqc [DEBUG ] No samples found: bclconvert [2025-08-06 15:03:08,540] multiqc [DEBUG ] No samples found: interop [2025-08-06 15:03:08,546] multiqc [DEBUG ] No samples found: ivar [2025-08-06 15:03:08,550] multiqc [DEBUG ] No samples found: flash [2025-08-06 15:03:08,554] multiqc [DEBUG ] No samples found: seqyclean [2025-08-06 15:03:08,559] multiqc [DEBUG ] No samples found: optitype [2025-08-06 15:03:08,646] multiqc [INFO ] Compressing plot data [2025-08-06 15:03:10,619] multiqc [INFO ] Report : multiqc_report.html [2025-08-06 15:03:10,619] multiqc [INFO ] Data : multiqc_data [2025-08-06 15:03:10,619] multiqc [DEBUG ] Moving data file from '/scratch/tmpoucc1x09/multiqc_data' to '/projectnb/wax-dk/max/G245_RNASEQ/Scripts/99_final_summary/G245_RNASEQ_multiqc_report/multiqc_data' [2025-08-06 15:03:10,812] multiqc [INFO ] MultiQC complete