Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G245_M01_statistics_for_all_accepted_reads 32220670 0 3593850 0 0 0 0 0 32220670 0 100.0 nan 28626820 0 14313410 0 14313410 0 28626820 0 100.0 nan 28626820 0 0 0 0.0 nan 0 0 0 0 32220670 G245_M01_statistics_for_primary_reads 28626820 0 0 0 0 0 0 0 28626820 0 100.0 nan 28626820 0 14313410 0 14313410 0 28626820 0 100.0 nan 28626820 0 0 0 0.0 nan 0 0 0 0 28626820 G245_M01_statistics_for_primary_unique_reads 26579324 0 0 0 0 0 0 0 26579324 0 100.0 nan 26579324 0 13289662 0 13289662 0 26579324 0 100.0 nan 26579324 0 0 0 0.0 nan 0 0 0 0 26579324 G245_M02_statistics_for_all_accepted_reads 31497700 0 3253008 0 0 0 0 0 31497700 0 100.0 nan 28244692 0 14122346 0 14122346 0 28244692 0 100.0 nan 28244692 0 0 0 0.0 nan 0 0 0 0 31497700 G245_M02_statistics_for_primary_reads 28244692 0 0 0 0 0 0 0 28244692 0 100.0 nan 28244692 0 14122346 0 14122346 0 28244692 0 100.0 nan 28244692 0 0 0 0.0 nan 0 0 0 0 28244692 G245_M02_statistics_for_primary_unique_reads 26365490 0 0 0 0 0 0 0 26365490 0 100.0 nan 26365490 0 13182745 0 13182745 0 26365490 0 100.0 nan 26365490 0 0 0 0.0 nan 0 0 0 0 26365490 G245_M03_statistics_for_all_accepted_reads 30286544 0 3390602 0 0 0 0 0 30286544 0 100.0 nan 26895942 0 13447971 0 13447971 0 26895942 0 100.0 nan 26895942 0 0 0 0.0 nan 0 0 0 0 30286544 G245_M03_statistics_for_primary_reads 26895942 0 0 0 0 0 0 0 26895942 0 100.0 nan 26895942 0 13447971 0 13447971 0 26895942 0 100.0 nan 26895942 0 0 0 0.0 nan 0 0 0 0 26895942 G245_M03_statistics_for_primary_unique_reads 24992414 0 0 0 0 0 0 0 24992414 0 100.0 nan 24992414 0 12496207 0 12496207 0 24992414 0 100.0 nan 24992414 0 0 0 0.0 nan 0 0 0 0 24992414 G245_M04_statistics_for_all_accepted_reads 33692152 0 3424288 0 0 0 0 0 33692152 0 100.0 nan 30267864 0 15133932 0 15133932 0 30267864 0 100.0 nan 30267864 0 0 0 0.0 nan 0 0 0 0 33692152 G245_M04_statistics_for_primary_reads 30267864 0 0 0 0 0 0 0 30267864 0 100.0 nan 30267864 0 15133932 0 15133932 0 30267864 0 100.0 nan 30267864 0 0 0 0.0 nan 0 0 0 0 30267864 G245_M04_statistics_for_primary_unique_reads 28237250 0 0 0 0 0 0 0 28237250 0 100.0 nan 28237250 0 14118625 0 14118625 0 28237250 0 100.0 nan 28237250 0 0 0 0.0 nan 0 0 0 0 28237250 G245_M05_statistics_for_all_accepted_reads 39219960 0 3732650 0 0 0 0 0 39219960 0 100.0 nan 35487310 0 17743655 0 17743655 0 35487310 0 100.0 nan 35487310 0 0 0 0.0 nan 0 0 0 0 39219960 G245_M05_statistics_for_primary_reads 35487310 0 0 0 0 0 0 0 35487310 0 100.0 nan 35487310 0 17743655 0 17743655 0 35487310 0 100.0 nan 35487310 0 0 0 0.0 nan 0 0 0 0 35487310 G245_M05_statistics_for_primary_unique_reads 33297572 0 0 0 0 0 0 0 33297572 0 100.0 nan 33297572 0 16648786 0 16648786 0 33297572 0 100.0 nan 33297572 0 0 0 0.0 nan 0 0 0 0 33297572 G245_M06_statistics_for_all_accepted_reads 30729444 0 3152088 0 0 0 0 0 30729444 0 100.0 nan 27577356 0 13788678 0 13788678 0 27577356 0 100.0 nan 27577356 0 0 0 0.0 nan 0 0 0 0 30729444 G245_M06_statistics_for_primary_reads 27577356 0 0 0 0 0 0 0 27577356 0 100.0 nan 27577356 0 13788678 0 13788678 0 27577356 0 100.0 nan 27577356 0 0 0 0.0 nan 0 0 0 0 27577356 G245_M06_statistics_for_primary_unique_reads 25842286 0 0 0 0 0 0 0 25842286 0 100.0 nan 25842286 0 12921143 0 12921143 0 25842286 0 100.0 nan 25842286 0 0 0 0.0 nan 0 0 0 0 25842286 G245_M07_statistics_for_all_accepted_reads 41155266 0 3402434 0 0 0 0 0 41155266 0 100.0 nan 37752832 0 18876416 0 18876416 0 37752832 0 100.0 nan 37752832 0 0 0 0.0 nan 0 0 0 0 41155266 G245_M07_statistics_for_primary_reads 37752832 0 0 0 0 0 0 0 37752832 0 100.0 nan 37752832 0 18876416 0 18876416 0 37752832 0 100.0 nan 37752832 0 0 0 0.0 nan 0 0 0 0 37752832 G245_M07_statistics_for_primary_unique_reads 35567552 0 0 0 0 0 0 0 35567552 0 100.0 nan 35567552 0 17783776 0 17783776 0 35567552 0 100.0 nan 35567552 0 0 0 0.0 nan 0 0 0 0 35567552 G245_M08_statistics_for_all_accepted_reads 22804942 0 2086574 0 0 0 0 0 22804942 0 100.0 nan 20718368 0 10359184 0 10359184 0 20718368 0 100.0 nan 20718368 0 0 0 0.0 nan 0 0 0 0 22804942 G245_M08_statistics_for_primary_reads 20718368 0 0 0 0 0 0 0 20718368 0 100.0 nan 20718368 0 10359184 0 10359184 0 20718368 0 100.0 nan 20718368 0 0 0 0.0 nan 0 0 0 0 20718368 G245_M08_statistics_for_primary_unique_reads 19329272 0 0 0 0 0 0 0 19329272 0 100.0 nan 19329272 0 9664636 0 9664636 0 19329272 0 100.0 nan 19329272 0 0 0 0.0 nan 0 0 0 0 19329272 G245_M09_statistics_for_all_accepted_reads 35790520 0 2906668 0 0 0 0 0 35790520 0 100.0 nan 32883852 0 16441926 0 16441926 0 32883852 0 100.0 nan 32883852 0 0 0 0.0 nan 0 0 0 0 35790520 G245_M09_statistics_for_primary_reads 32883852 0 0 0 0 0 0 0 32883852 0 100.0 nan 32883852 0 16441926 0 16441926 0 32883852 0 100.0 nan 32883852 0 0 0 0.0 nan 0 0 0 0 32883852 G245_M09_statistics_for_primary_unique_reads 30878670 0 0 0 0 0 0 0 30878670 0 100.0 nan 30878670 0 15439335 0 15439335 0 30878670 0 100.0 nan 30878670 0 0 0 0.0 nan 0 0 0 0 30878670 G245_M10_statistics_for_all_accepted_reads 31824148 0 2610316 0 0 0 0 0 31824148 0 100.0 nan 29213832 0 14606916 0 14606916 0 29213832 0 100.0 nan 29213832 0 0 0 0.0 nan 0 0 0 0 31824148 G245_M10_statistics_for_primary_reads 29213832 0 0 0 0 0 0 0 29213832 0 100.0 nan 29213832 0 14606916 0 14606916 0 29213832 0 100.0 nan 29213832 0 0 0 0.0 nan 0 0 0 0 29213832 G245_M10_statistics_for_primary_unique_reads 27486836 0 0 0 0 0 0 0 27486836 0 100.0 nan 27486836 0 13743418 0 13743418 0 27486836 0 100.0 nan 27486836 0 0 0 0.0 nan 0 0 0 0 27486836 G245_M11_statistics_for_all_accepted_reads 29435528 0 2348576 0 0 0 0 0 29435528 0 100.0 nan 27086952 0 13543476 0 13543476 0 27086952 0 100.0 nan 27086952 0 0 0 0.0 nan 0 0 0 0 29435528 G245_M11_statistics_for_primary_reads 27086952 0 0 0 0 0 0 0 27086952 0 100.0 nan 27086952 0 13543476 0 13543476 0 27086952 0 100.0 nan 27086952 0 0 0 0.0 nan 0 0 0 0 27086952 G245_M11_statistics_for_primary_unique_reads 25673136 0 0 0 0 0 0 0 25673136 0 100.0 nan 25673136 0 12836568 0 12836568 0 25673136 0 100.0 nan 25673136 0 0 0 0.0 nan 0 0 0 0 25673136 G245_M12_statistics_for_all_accepted_reads 33391624 0 2382134 0 0 0 0 0 33391624 0 100.0 nan 31009490 0 15504745 0 15504745 0 31009490 0 100.0 nan 31009490 0 0 0 0.0 nan 0 0 0 0 33391624 G245_M12_statistics_for_primary_reads 31009490 0 0 0 0 0 0 0 31009490 0 100.0 nan 31009490 0 15504745 0 15504745 0 31009490 0 100.0 nan 31009490 0 0 0 0.0 nan 0 0 0 0 31009490 G245_M12_statistics_for_primary_unique_reads 29675680 0 0 0 0 0 0 0 29675680 0 100.0 nan 29675680 0 14837840 0 14837840 0 29675680 0 100.0 nan 29675680 0 0 0 0.0 nan 0 0 0 0 29675680 G245_M13_statistics_for_all_accepted_reads 32199564 0 2264782 0 0 0 0 0 32199564 0 100.0 nan 29934782 0 14967391 0 14967391 0 29934782 0 100.0 nan 29934782 0 0 0 0.0 nan 0 0 0 0 32199564 G245_M13_statistics_for_primary_reads 29934782 0 0 0 0 0 0 0 29934782 0 100.0 nan 29934782 0 14967391 0 14967391 0 29934782 0 100.0 nan 29934782 0 0 0 0.0 nan 0 0 0 0 29934782 G245_M13_statistics_for_primary_unique_reads 28558614 0 0 0 0 0 0 0 28558614 0 100.0 nan 28558614 0 14279307 0 14279307 0 28558614 0 100.0 nan 28558614 0 0 0 0.0 nan 0 0 0 0 28558614 G245_M14_statistics_for_all_accepted_reads 33912204 0 3063790 0 0 0 0 0 33912204 0 100.0 nan 30848414 0 15424207 0 15424207 0 30848414 0 100.0 nan 30848414 0 0 0 0.0 nan 0 0 0 0 33912204 G245_M14_statistics_for_primary_reads 30848414 0 0 0 0 0 0 0 30848414 0 100.0 nan 30848414 0 15424207 0 15424207 0 30848414 0 100.0 nan 30848414 0 0 0 0.0 nan 0 0 0 0 30848414 G245_M14_statistics_for_primary_unique_reads 28975930 0 0 0 0 0 0 0 28975930 0 100.0 nan 28975930 0 14487965 0 14487965 0 28975930 0 100.0 nan 28975930 0 0 0 0.0 nan 0 0 0 0 28975930 G245_M15_statistics_for_all_accepted_reads 26984644 0 2610436 0 0 0 0 0 26984644 0 100.0 nan 24374208 0 12187104 0 12187104 0 24374208 0 100.0 nan 24374208 0 0 0 0.0 nan 0 0 0 0 26984644 G245_M15_statistics_for_primary_reads 24374208 0 0 0 0 0 0 0 24374208 0 100.0 nan 24374208 0 12187104 0 12187104 0 24374208 0 100.0 nan 24374208 0 0 0 0.0 nan 0 0 0 0 24374208 G245_M15_statistics_for_primary_unique_reads 22774740 0 0 0 0 0 0 0 22774740 0 100.0 nan 22774740 0 11387370 0 11387370 0 22774740 0 100.0 nan 22774740 0 0 0 0.0 nan 0 0 0 0 22774740 G245_M16_statistics_for_all_accepted_reads 31065526 0 2941356 0 0 0 0 0 31065526 0 100.0 nan 28124170 0 14062085 0 14062085 0 28124170 0 100.0 nan 28124170 0 0 0 0.0 nan 0 0 0 0 31065526 G245_M16_statistics_for_primary_reads 28124170 0 0 0 0 0 0 0 28124170 0 100.0 nan 28124170 0 14062085 0 14062085 0 28124170 0 100.0 nan 28124170 0 0 0 0.0 nan 0 0 0 0 28124170 G245_M16_statistics_for_primary_unique_reads 26362190 0 0 0 0 0 0 0 26362190 0 100.0 nan 26362190 0 13181095 0 13181095 0 26362190 0 100.0 nan 26362190 0 0 0 0.0 nan 0 0 0 0 26362190 statistics_for_primary_unique_reads 24992414 0 0 0 0 0 0 0 24992414 0 100.0 nan 24992414 0 12496207 0 12496207 0 24992414 0 100.0 nan 24992414 0 0 0 0.0 nan 0 0 0 0 24992414