[2025-08-18 09:03:26,576] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-18 09:03:26,576] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-18 09:03:26,576] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-08-18 09:03:26,576] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-18 09:03:26,577] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-18 09:03:26,577] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-18 09:03:26,577] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-18 09:03:26,577] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G246_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-18 09:03:26,994] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-18 09:03:26,994] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G246_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-18 09:03:26,994] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/G246_RNASEQ_v2_multiqc_report [2025-08-18 09:03:26,994] multiqc [DEBUG ] Template : default [2025-08-18 09:03:26,994] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-18 09:03:26,995] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-18 09:03:26,995] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpvg0z3tkm [2025-08-18 09:03:27,080] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G246_RNASEQ/SAMPLES [2025-08-18 09:03:27,080] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/03_FASTQC [2025-08-18 09:03:27,080] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/06_CollectMetrics [2025-08-18 09:03:27,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M21_COMB_2.fq.gz [2025-08-18 09:03:27,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M21_COMB_1.fq.gz [2025-08-18 09:03:27,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,407] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:27,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-18 09:03:29,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-18 09:03:29,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-18 09:03:29,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-18 09:03:29,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-18 09:03:29,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-18 09:03:29,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M21_hist.pdf [2025-08-18 09:03:29,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:29,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:29,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:29,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:29,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:29,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:29,525] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,454] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:30,471] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-18 09:03:31,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:31,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:31,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-18 09:03:31,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M10_COMB_1.fq.gz [2025-08-18 09:03:31,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M10_COMB_2.fq.gz [2025-08-18 09:03:31,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,447] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,447] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:31,448] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-18 09:03:33,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-18 09:03:33,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-18 09:03:33,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-18 09:03:33,335] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-18 09:03:33,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-18 09:03:33,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:33,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:33,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:33,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:33,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:33,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M10_hist.pdf [2025-08-18 09:03:33,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,436] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:33,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,390] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,390] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,394] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:34,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-18 09:03:35,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:35,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:35,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-18 09:03:35,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M25_COMB_1.fq.gz [2025-08-18 09:03:35,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M25_COMB_2.fq.gz [2025-08-18 09:03:35,497] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:35,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-18 09:03:37,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-18 09:03:37,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-18 09:03:37,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-18 09:03:37,614] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-18 09:03:37,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-18 09:03:37,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:37,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:37,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:37,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:37,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:37,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M25_hist.pdf [2025-08-18 09:03:37,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,698] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:37,715] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,638] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:38,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-18 09:03:39,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:39,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:39,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-18 09:03:39,651] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M14_COMB_2.fq.gz [2025-08-18 09:03:39,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M14_COMB_1.fq.gz [2025-08-18 09:03:39,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:39,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-18 09:03:41,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-18 09:03:41,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-18 09:03:41,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-18 09:03:41,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-18 09:03:41,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-18 09:03:41,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M14_hist.pdf [2025-08-18 09:03:41,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:41,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:41,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:41,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:41,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:41,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,739] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,743] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,743] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,743] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,744] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,744] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,744] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,744] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:41,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,656] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,658] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,658] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,662] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:42,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-18 09:03:43,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:43,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:43,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-18 09:03:43,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M29_COMB_2.fq.gz [2025-08-18 09:03:43,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M29_COMB_1.fq.gz [2025-08-18 09:03:43,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:43,646] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-18 09:03:45,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-18 09:03:45,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-18 09:03:45,619] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-18 09:03:45,619] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-18 09:03:45,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-18 09:03:45,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:45,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:45,644] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:45,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:45,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:45,694] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M29_hist.pdf [2025-08-18 09:03:45,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,704] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:45,722] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,657] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,661] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:46,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-18 09:03:47,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:47,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:47,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-18 09:03:47,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M03_COMB_2.fq.gz [2025-08-18 09:03:47,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M03_COMB_1.fq.gz [2025-08-18 09:03:47,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,706] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:47,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-18 09:03:49,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-18 09:03:49,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-18 09:03:49,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-18 09:03:49,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-18 09:03:49,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-18 09:03:49,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:49,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:49,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:49,595] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:49,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:49,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M03_hist.pdf [2025-08-18 09:03:49,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,657] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,661] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:49,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:50,622] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-18 09:03:51,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:51,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:51,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-18 09:03:51,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M18_COMB_2.fq.gz [2025-08-18 09:03:51,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M18_COMB_1.fq.gz [2025-08-18 09:03:51,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,646] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,646] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,647] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:51,647] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-18 09:03:53,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-18 09:03:53,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-18 09:03:53,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-18 09:03:53,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-18 09:03:53,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-18 09:03:53,540] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:53,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:53,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:53,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:53,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:53,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M18_hist.pdf [2025-08-18 09:03:53,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,599] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:53,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,518] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,518] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,521] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,522] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,522] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:54,538] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-18 09:03:55,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:55,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:55,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-18 09:03:55,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M07_COMB_2.fq.gz [2025-08-18 09:03:55,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M07_COMB_1.fq.gz [2025-08-18 09:03:55,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,499] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,505] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:55,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-18 09:03:57,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-18 09:03:57,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-18 09:03:57,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-18 09:03:57,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-18 09:03:57,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-18 09:03:57,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M07_hist.pdf [2025-08-18 09:03:57,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:57,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:57,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:57,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:57,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:57,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,586] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:57,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,533] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:58,551] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-18 09:03:59,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:59,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:59,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-18 09:03:59,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M31_COMB_1.fq.gz [2025-08-18 09:03:59,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M31_COMB_2.fq.gz [2025-08-18 09:03:59,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,567] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,572] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:03:59,573] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-18 09:04:01,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-18 09:04:01,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-18 09:04:01,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-18 09:04:01,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-18 09:04:01,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-18 09:04:01,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:01,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:01,573] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:01,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:01,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:01,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M31_hist.pdf [2025-08-18 09:04:01,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,672] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:01,690] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:02,649] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-18 09:04:03,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:03,571] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:03,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-18 09:04:03,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M20_COMB_2.fq.gz [2025-08-18 09:04:03,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M20_COMB_1.fq.gz [2025-08-18 09:04:03,651] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,653] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:03,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-18 09:04:05,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-18 09:04:05,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-18 09:04:05,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-18 09:04:05,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-18 09:04:05,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-18 09:04:05,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:05,720] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:05,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:05,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:05,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:05,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M20_hist.pdf [2025-08-18 09:04:05,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,787] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:05,805] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:06,765] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-18 09:04:07,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:07,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:07,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-18 09:04:07,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M24_COMB_1.fq.gz [2025-08-18 09:04:07,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M24_COMB_2.fq.gz [2025-08-18 09:04:07,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,883] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:07,888] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-18 09:04:09,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-18 09:04:09,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-18 09:04:09,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-18 09:04:09,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-18 09:04:09,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-18 09:04:09,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:09,997] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:09,997] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:09,997] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:10,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:10,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M24_hist.pdf [2025-08-18 09:04:10,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,061] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,061] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,061] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,061] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,062] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,062] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,062] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:10,085] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,006] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,015] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-18 09:04:11,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:11,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:11,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-18 09:04:12,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M13_COMB_2.fq.gz [2025-08-18 09:04:12,018] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M13_COMB_1.fq.gz [2025-08-18 09:04:12,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,066] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:12,070] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-18 09:04:14,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-18 09:04:14,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-18 09:04:14,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-18 09:04:14,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-18 09:04:14,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-18 09:04:14,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M13_hist.pdf [2025-08-18 09:04:14,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:14,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:14,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:14,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:14,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:14,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:14,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,175] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:15,197] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-18 09:04:16,110] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:16,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:16,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-18 09:04:16,153] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M28_COMB_1.fq.gz [2025-08-18 09:04:16,153] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M28_COMB_2.fq.gz [2025-08-18 09:04:16,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,209] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,214] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:16,214] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-18 09:04:18,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-18 09:04:18,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-18 09:04:18,145] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-18 09:04:18,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-18 09:04:18,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-18 09:04:18,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:18,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:18,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:18,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:18,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:18,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M28_hist.pdf [2025-08-18 09:04:18,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,258] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,258] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:18,275] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,201] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,206] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:19,223] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-18 09:04:20,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:20,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:20,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-18 09:04:20,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M02_COMB_1.fq.gz [2025-08-18 09:04:20,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M02_COMB_2.fq.gz [2025-08-18 09:04:20,230] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,233] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,236] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:20,237] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-18 09:04:22,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-18 09:04:22,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-18 09:04:22,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-18 09:04:22,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-18 09:04:22,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-18 09:04:22,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M02_hist.pdf [2025-08-18 09:04:22,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:22,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:22,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:22,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:22,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:22,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,339] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,343] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:22,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,289] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,293] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:23,310] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-18 09:04:24,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:24,222] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:24,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-18 09:04:24,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M17_COMB_1.fq.gz [2025-08-18 09:04:24,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M17_COMB_2.fq.gz [2025-08-18 09:04:24,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:24,316] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-18 09:04:26,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-18 09:04:26,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-18 09:04:26,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-18 09:04:26,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-18 09:04:26,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-18 09:04:26,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:26,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:26,365] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:26,365] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:26,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:26,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M17_hist.pdf [2025-08-18 09:04:26,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:26,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,356] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,360] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,361] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:27,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-18 09:04:28,288] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:28,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:28,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-18 09:04:28,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M30_COMB_2.fq.gz [2025-08-18 09:04:28,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M30_COMB_1.fq.gz [2025-08-18 09:04:28,424] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,427] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,433] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:28,433] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-18 09:04:30,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-18 09:04:30,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-18 09:04:30,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-18 09:04:30,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-18 09:04:30,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-18 09:04:30,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:30,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:30,158] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:30,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:30,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:30,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M30_hist.pdf [2025-08-18 09:04:30,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,218] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,218] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,219] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,219] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,219] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,219] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,219] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:30,236] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:31,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-18 09:04:32,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:32,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:32,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-18 09:04:32,111] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M23_COMB_2.fq.gz [2025-08-18 09:04:32,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M23_COMB_1.fq.gz [2025-08-18 09:04:32,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,174] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,174] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:32,178] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-18 09:04:33,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-18 09:04:33,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-18 09:04:33,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-18 09:04:33,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-18 09:04:33,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-18 09:04:34,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:34,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:34,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:34,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:34,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:34,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M23_hist.pdf [2025-08-18 09:04:34,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,090] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:34,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,002] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,002] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,002] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,002] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,023] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-18 09:04:35,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:35,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:35,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-18 09:04:35,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M06_COMB_2.fq.gz [2025-08-18 09:04:35,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M06_COMB_1.fq.gz [2025-08-18 09:04:36,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,080] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:36,083] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-18 09:04:37,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-18 09:04:37,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-18 09:04:37,975] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-18 09:04:37,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-18 09:04:37,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-18 09:04:37,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M06_hist.pdf [2025-08-18 09:04:38,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:38,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:38,006] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:38,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:38,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:38,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,087] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,087] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:38,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,018] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,035] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-18 09:04:39,920] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:39,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:39,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-18 09:04:39,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M12_COMB_1.fq.gz [2025-08-18 09:04:39,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M12_COMB_2.fq.gz [2025-08-18 09:04:40,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,081] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:40,082] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-18 09:04:41,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-18 09:04:41,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-18 09:04:42,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-18 09:04:42,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-18 09:04:42,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-18 09:04:42,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M12_hist.pdf [2025-08-18 09:04:42,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:42,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:42,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:42,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:42,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:42,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,116] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,121] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,121] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,122] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,122] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,122] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,122] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,122] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:42,147] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,097] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,097] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:43,119] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-18 09:04:44,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:44,025] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:44,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-18 09:04:44,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M27_COMB_1.fq.gz [2025-08-18 09:04:44,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M27_COMB_2.fq.gz [2025-08-18 09:04:44,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:44,129] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-18 09:04:46,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-18 09:04:46,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-18 09:04:46,203] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-18 09:04:46,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-18 09:04:46,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-18 09:04:46,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:46,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:46,230] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:46,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:46,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:46,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M27_hist.pdf [2025-08-18 09:04:46,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,327] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,327] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,328] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,328] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,328] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,328] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,328] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:46,345] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,281] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:47,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-18 09:04:48,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:48,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:48,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-18 09:04:48,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M01_COMB_2.fq.gz [2025-08-18 09:04:48,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M01_COMB_1.fq.gz [2025-08-18 09:04:48,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,349] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,353] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:48,383] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-18 09:04:50,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-18 09:04:50,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-18 09:04:50,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-18 09:04:50,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-18 09:04:50,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-18 09:04:50,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M01_hist.pdf [2025-08-18 09:04:50,102] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:50,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:50,105] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:50,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:50,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:50,160] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,171] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:50,190] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,118] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,122] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:51,139] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-18 09:04:52,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:52,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:52,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-18 09:04:52,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M16_COMB_2.fq.gz [2025-08-18 09:04:52,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M16_COMB_1.fq.gz [2025-08-18 09:04:52,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,209] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,215] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,215] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:52,215] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-18 09:04:54,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-18 09:04:54,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-18 09:04:54,191] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-18 09:04:54,191] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-18 09:04:54,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-18 09:04:54,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M16_hist.pdf [2025-08-18 09:04:54,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:54,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:54,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:54,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:54,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:54,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,276] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:54,293] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,209] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:55,226] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-18 09:04:56,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:56,162] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:56,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-18 09:04:56,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M05_COMB_1.fq.gz [2025-08-18 09:04:56,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M05_COMB_2.fq.gz [2025-08-18 09:04:56,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,314] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:56,318] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-18 09:04:58,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-18 09:04:58,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-18 09:04:58,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-18 09:04:58,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-18 09:04:58,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-18 09:04:58,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:04:58,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:04:58,330] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:04:58,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:04:58,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:04:58,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M05_hist.pdf [2025-08-18 09:04:58,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,410] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,410] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,410] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:58,427] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,371] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:04:59,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-18 09:05:00,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:05:00,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:05:00,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-18 09:05:00,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M09_COMB_2.fq.gz [2025-08-18 09:05:00,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M09_COMB_1.fq.gz [2025-08-18 09:05:00,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:00,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-18 09:05:02,396] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-18 09:05:02,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-18 09:05:02,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-18 09:05:02,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-18 09:05:02,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-18 09:05:02,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:02,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:02,424] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:02,424] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:02,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:02,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M09_hist.pdf [2025-08-18 09:05:02,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,496] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:02,512] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,429] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:03,450] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-18 09:05:04,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:04,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:04,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-18 09:05:04,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M22_COMB_2.fq.gz [2025-08-18 09:05:04,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M22_COMB_1.fq.gz [2025-08-18 09:05:04,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,549] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:04,553] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-18 09:05:06,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-18 09:05:06,283] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-18 09:05:06,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-18 09:05:06,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-18 09:05:06,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-18 09:05:06,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:06,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:06,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:06,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:06,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:06,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M22_hist.pdf [2025-08-18 09:05:06,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,365] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,365] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,370] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:06,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,315] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,315] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,319] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,320] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:07,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-18 09:05:08,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:08,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:08,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-18 09:05:08,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M11_COMB_2.fq.gz [2025-08-18 09:05:08,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M11_COMB_1.fq.gz [2025-08-18 09:05:08,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,372] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,372] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,372] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,373] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:08,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-18 09:05:10,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-18 09:05:10,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-18 09:05:10,379] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-18 09:05:10,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-18 09:05:10,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-18 09:05:10,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:10,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:10,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:10,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:10,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:10,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M11_hist.pdf [2025-08-18 09:05:10,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:10,507] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:11,445] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-18 09:05:12,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:12,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:12,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-18 09:05:12,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M26_COMB_2.fq.gz [2025-08-18 09:05:12,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M26_COMB_1.fq.gz [2025-08-18 09:05:12,426] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:12,432] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-18 09:05:14,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-18 09:05:14,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-18 09:05:14,413] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-18 09:05:14,413] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-18 09:05:14,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-18 09:05:14,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M26_hist.pdf [2025-08-18 09:05:14,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:14,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:14,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:14,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:14,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:14,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:14,526] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,481] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,481] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,481] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,481] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,481] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,482] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,482] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:15,503] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-18 09:05:16,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:16,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:16,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-18 09:05:16,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M15_COMB_1.fq.gz [2025-08-18 09:05:16,457] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M15_COMB_2.fq.gz [2025-08-18 09:05:16,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,526] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,526] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,532] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,532] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,532] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,532] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,533] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,533] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,533] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,533] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:16,533] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-18 09:05:18,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-18 09:05:18,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-18 09:05:18,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-18 09:05:18,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-18 09:05:18,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-18 09:05:18,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M15_hist.pdf [2025-08-18 09:05:18,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:18,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:18,605] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:18,605] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:18,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:18,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,667] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,667] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:18,686] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,636] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,640] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,641] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:19,658] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-18 09:05:20,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:20,605] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:20,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-18 09:05:20,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M04_COMB_2.fq.gz [2025-08-18 09:05:20,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M04_COMB_1.fq.gz [2025-08-18 09:05:20,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:20,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-18 09:05:22,542] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-18 09:05:22,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-18 09:05:22,545] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-18 09:05:22,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-18 09:05:22,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-18 09:05:22,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:22,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:22,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:22,569] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:22,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:22,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M04_hist.pdf [2025-08-18 09:05:22,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:22,654] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:23,612] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-18 09:05:24,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:24,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:24,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-18 09:05:24,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M19_COMB_1.fq.gz [2025-08-18 09:05:24,585] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M19_COMB_2.fq.gz [2025-08-18 09:05:24,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:24,639] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-18 09:05:26,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-18 09:05:26,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-18 09:05:26,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-18 09:05:26,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-18 09:05:26,448] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-18 09:05:26,459] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M19_hist.pdf [2025-08-18 09:05:26,465] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:26,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:26,468] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:26,468] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:26,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:26,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:26,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,509] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:27,533] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-18 09:05:28,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:28,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:28,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-18 09:05:28,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M08_COMB_2.fq.gz [2025-08-18 09:05:28,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M08_COMB_1.fq.gz [2025-08-18 09:05:28,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,545] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,545] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,549] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:28,550] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-18 09:05:30,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-18 09:05:30,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-18 09:05:30,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-18 09:05:30,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-18 09:05:30,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-18 09:05:30,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:30,419] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:30,419] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:30,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:30,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:30,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M08_hist.pdf [2025-08-18 09:05:30,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,501] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,505] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:30,522] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,474] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:31,498] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-18 09:05:32,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:32,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:32,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-18 09:05:32,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-18 09:05:32,460] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-18 09:05:32,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-18 09:05:32,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-18 09:05:32,479] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-18 09:05:32,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-18 09:05:32,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-18 09:05:32,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-18 09:05:32,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-18 09:05:32,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-18 09:05:32,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-18 09:05:32,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-18 09:05:32,543] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-18 09:05:32,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M03.o9883587 [2025-08-18 09:05:32,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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09:05:43,434] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-18 09:05:43,434] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-18 09:05:43,436] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-08-18 09:05:43,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-08-18 09:05:43,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-08-18 09:05:43,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-08-18 09:05:43,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-08-18 09:05:43,580] multiqc 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Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-18 09:05:50,424] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-18 09:05:50,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-18 09:05:50,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-18 09:05:50,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-18 09:05:50,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-18 09:05:50,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-18 09:05:50,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-18 09:05:50,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-18 09:05:50,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-18 09:05:50,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-18 09:05:50,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-18 09:05:50,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-18 09:05:50,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-18 09:05:50,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-18 09:05:50,486] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-18 09:05:50,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-18 09:05:50,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-18 09:05:50,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-18 09:05:50,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-18 09:05:50,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-18 09:05:50,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-18 09:05:50,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-18 09:05:50,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-18 09:05:50,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-18 09:05:50,525] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-18 09:05:50,525] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-18 09:05:50,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-18 09:05:50,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-18 09:05:50,545] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-18 09:05:50,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-18 09:05:50,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-18 09:05:50,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-18 09:05:50,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-18 09:05:50,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-18 09:05:50,566] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-18 09:05:50,566] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-18 09:05:50,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-18 09:05:50,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-18 09:05:50,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-18 09:05:50,586] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-18 09:05:50,586] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-18 09:05:50,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-18 09:05:50,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-18 09:05:50,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-18 09:05:50,605] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-18 09:05:50,605] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-18 09:05:50,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-18 09:05:50,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-18 09:05:50,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-18 09:05:50,625] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-18 09:05:50,625] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-18 09:05:50,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-18 09:05:50,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-18 09:05:50,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-18 09:05:50,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-18 09:05:50,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-18 09:05:50,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-18 09:05:50,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-18 09:05:50,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-18 09:05:50,686] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:50,694] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-18 09:05:51,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-18 09:05:51,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-18 09:05:51,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-18 09:05:51,495] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-18 09:05:51,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-18 09:05:51,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-18 09:05:51,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-18 09:05:51,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-18 09:05:51,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-18 09:05:51,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-18 09:05:52,005] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-18 09:05:52,006] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-18 09:05:52,008] multiqc [DEBUG ] No samples found: custom_content [2025-08-18 09:05:52,013] multiqc [DEBUG ] No samples found: ccs [2025-08-18 09:05:52,018] multiqc [DEBUG ] No samples found: ngsderive [2025-08-18 09:05:52,023] multiqc [DEBUG ] No samples found: purple [2025-08-18 09:05:52,028] multiqc [DEBUG ] No samples found: conpair [2025-08-18 09:05:52,033] multiqc [DEBUG ] No samples found: lima [2025-08-18 09:05:52,038] multiqc [DEBUG ] No samples found: peddy [2025-08-18 09:05:52,043] multiqc [DEBUG ] No samples found: somalier [2025-08-18 09:05:52,048] multiqc [DEBUG ] No samples found: methylQA [2025-08-18 09:05:52,057] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-18 09:05:52,058] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-18 09:05:52,058] multiqc [DEBUG ] No samples found: mosdepth [2025-08-18 09:05:52,062] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-18 09:05:52,065] multiqc [DEBUG ] No samples found: qualimap [2025-08-18 09:05:52,069] multiqc [DEBUG ] No samples found: preseq [2025-08-18 09:05:52,074] multiqc [DEBUG ] No samples found: quast [2025-08-18 09:05:52,079] multiqc [DEBUG ] No samples found: qorts [2025-08-18 09:05:52,084] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-18 09:05:52,089] multiqc [DEBUG ] No samples found: rockhopper [2025-08-18 09:05:52,094] multiqc [DEBUG ] No samples found: rsem [2025-08-18 09:05:52,147] multiqc.modules.rseqc.rseqc [INFO ] Found 30 infer_experiment reports [2025-08-18 09:05:52,155] multiqc [DEBUG ] No samples found: busco [2025-08-18 09:05:52,160] multiqc [DEBUG ] No samples found: bustools [2025-08-18 09:05:52,164] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-18 09:05:52,169] multiqc [DEBUG ] No samples found: gffcompare [2025-08-18 09:05:52,174] multiqc [DEBUG ] No samples found: disambiguate [2025-08-18 09:05:52,179] multiqc [DEBUG ] No samples found: supernova [2025-08-18 09:05:52,192] multiqc [DEBUG ] No samples found: deeptools [2025-08-18 09:05:52,197] multiqc [DEBUG ] No samples found: sargasso [2025-08-18 09:05:52,202] multiqc [DEBUG ] No samples found: verifybamid [2025-08-18 09:05:52,209] multiqc [DEBUG ] No samples found: mirtrace [2025-08-18 09:05:52,215] multiqc [DEBUG ] No samples found: happy [2025-08-18 09:05:52,220] multiqc [DEBUG ] No samples found: mirtop [2025-08-18 09:05:52,226] multiqc [DEBUG ] No samples found: sambamba [2025-08-18 09:05:52,235] multiqc [DEBUG ] No samples found: homer [2025-08-18 09:05:52,240] multiqc [DEBUG ] No samples found: hops [2025-08-18 09:05:52,245] multiqc [DEBUG ] No samples found: macs2 [2025-08-18 09:05:52,249] multiqc [DEBUG ] No samples found: theta2 [2025-08-18 09:05:52,254] multiqc [DEBUG ] No samples found: snpeff [2025-08-18 09:05:52,263] multiqc [DEBUG ] No samples found: gatk [2025-08-18 09:05:52,270] multiqc [DEBUG ] No samples found: htseq [2025-08-18 09:05:52,276] multiqc [DEBUG ] No samples found: bcftools [2025-08-18 09:05:52,284] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M21_sorted [2025-08-18 09:05:52,287] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M10_sorted [2025-08-18 09:05:52,290] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M25_sorted [2025-08-18 09:05:52,293] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M14_sorted [2025-08-18 09:05:52,296] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M29_sorted [2025-08-18 09:05:52,298] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M03_sorted [2025-08-18 09:05:52,301] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M18_sorted [2025-08-18 09:05:52,304] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M07_sorted [2025-08-18 09:05:52,306] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M31_sorted [2025-08-18 09:05:52,309] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M20_sorted [2025-08-18 09:05:52,311] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M24_sorted [2025-08-18 09:05:52,314] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M13_sorted [2025-08-18 09:05:52,317] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M28_sorted [2025-08-18 09:05:52,320] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M02_sorted [2025-08-18 09:05:52,323] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M17_sorted [2025-08-18 09:05:52,326] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M30_sorted [2025-08-18 09:05:52,329] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M23_sorted [2025-08-18 09:05:52,332] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M06_sorted [2025-08-18 09:05:52,334] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M12_sorted [2025-08-18 09:05:52,336] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M27_sorted [2025-08-18 09:05:52,338] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M01_sorted [2025-08-18 09:05:52,340] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M16_sorted [2025-08-18 09:05:52,341] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M05_sorted [2025-08-18 09:05:52,342] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M09_sorted [2025-08-18 09:05:52,343] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M22_sorted [2025-08-18 09:05:52,344] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M11_sorted [2025-08-18 09:05:52,345] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M26_sorted [2025-08-18 09:05:52,346] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M15_sorted [2025-08-18 09:05:52,348] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M04_sorted [2025-08-18 09:05:52,349] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M19_sorted [2025-08-18 09:05:52,349] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M08_sorted [2025-08-18 09:05:52,350] multiqc.modules.featureCounts.feature_counts [INFO ] Found 31 reports [2025-08-18 09:05:52,364] multiqc [DEBUG ] No samples found: fgbio [2025-08-18 09:05:52,381] multiqc [DEBUG ] No samples found: dragen [2025-08-18 09:05:52,387] multiqc [DEBUG ] No samples found: dedup [2025-08-18 09:05:52,392] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-18 09:05:52,423] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-18 09:05:52,431] multiqc [DEBUG ] No samples found: jcvi [2025-08-18 09:05:52,437] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-18 09:05:53,588] multiqc.modules.picard.picard [INFO ] Found 31 InsertSizeMetrics reports [2025-08-18 09:05:53,617] multiqc.modules.picard.picard [INFO ] Found 31 MarkDuplicates reports [2025-08-18 09:05:53,678] multiqc.modules.picard.picard [INFO ] Found 31 RnaSeqMetrics reports [2025-08-18 09:05:53,682] multiqc [DEBUG ] No samples found: vep [2025-08-18 09:05:53,690] multiqc [DEBUG ] No samples found: sentieon [2025-08-18 09:05:53,697] multiqc [DEBUG ] No samples found: prokka [2025-08-18 09:05:53,702] multiqc [DEBUG ] No samples found: qc3C [2025-08-18 09:05:53,707] multiqc [DEBUG ] No samples found: nanostat [2025-08-18 09:05:53,712] multiqc [DEBUG ] No samples found: samblaster [2025-08-18 09:05:53,801] multiqc.modules.samtools.samtools [INFO ] Found 93 flagstat reports [2025-08-18 09:05:53,806] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-18 09:05:53,811] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-18 09:05:53,818] multiqc [DEBUG ] No samples found: bamtools [2025-08-18 09:05:53,823] multiqc [DEBUG ] No samples found: jellyfish [2025-08-18 09:05:53,832] multiqc [DEBUG ] No samples found: vcftools [2025-08-18 09:05:53,839] multiqc [DEBUG ] No samples found: longranger [2025-08-18 09:05:53,844] multiqc [DEBUG ] No samples found: stacks [2025-08-18 09:05:53,849] multiqc [DEBUG ] No samples found: varscan2 [2025-08-18 09:05:53,854] multiqc [DEBUG ] No samples found: snippy [2025-08-18 09:05:53,869] multiqc [DEBUG ] No samples found: bbmap [2025-08-18 09:05:53,876] multiqc [DEBUG ] No samples found: bismark [2025-08-18 09:05:53,884] multiqc [DEBUG ] No samples found: biscuit [2025-08-18 09:05:53,888] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-18 09:05:53,893] multiqc [DEBUG ] No samples found: hicup [2025-08-18 09:05:53,898] multiqc [DEBUG ] No samples found: hicpro [2025-08-18 09:05:53,903] multiqc [DEBUG ] No samples found: salmon [2025-08-18 09:05:53,908] multiqc [DEBUG ] No samples found: kallisto [2025-08-18 09:05:53,914] multiqc [DEBUG ] No samples found: slamdunk [2025-08-18 09:05:56,197] multiqc.modules.star.star [INFO ] Found 31 reports and 31 gene count files [2025-08-18 09:05:56,205] multiqc [DEBUG ] No samples found: hisat2 [2025-08-18 09:05:56,210] multiqc [DEBUG ] No samples found: tophat [2025-08-18 09:05:56,216] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-18 09:05:56,221] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-18 09:05:56,226] multiqc [DEBUG ] No samples found: snpsplit [2025-08-18 09:05:56,233] multiqc [DEBUG ] No samples found: odgi [2025-08-18 09:05:56,239] multiqc [DEBUG ] No samples found: pangolin [2025-08-18 09:05:56,244] multiqc [DEBUG ] No samples found: kat [2025-08-18 09:05:56,249] multiqc [DEBUG ] No samples found: leehom [2025-08-18 09:05:56,254] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-18 09:05:56,259] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-18 09:05:56,264] multiqc [DEBUG ] No samples found: cutadapt [2025-08-18 09:05:56,270] multiqc [DEBUG ] No samples found: flexbar [2025-08-18 09:05:56,277] multiqc [DEBUG ] No samples found: kaiju [2025-08-18 09:05:56,281] multiqc [DEBUG ] No samples found: kraken [2025-08-18 09:05:56,286] multiqc [DEBUG ] No samples found: malt [2025-08-18 09:05:56,291] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-18 09:05:56,296] multiqc [DEBUG ] No samples found: sickle [2025-08-18 09:05:56,303] multiqc [DEBUG ] No samples found: skewer [2025-08-18 09:05:56,309] multiqc [DEBUG ] No samples found: sortmerna [2025-08-18 09:05:56,314] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-18 09:05:56,319] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-18 09:05:56,324] multiqc [DEBUG ] No samples found: afterqc [2025-08-18 09:05:56,334] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,337] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,340] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,342] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,345] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,348] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,350] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,353] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,356] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,359] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,361] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,364] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,367] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,369] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,372] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,375] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,379] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,382] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,384] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,387] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,390] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,393] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,396] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,399] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,403] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,406] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,409] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,412] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,415] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,418] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,420] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-18 09:05:56,421] multiqc.modules.fastp.fastp [INFO ] Found 31 reports [2025-08-18 09:06:08,233] multiqc.modules.fastqc.fastqc [INFO ] Found 62 reports [2025-08-18 09:06:08,235] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-08-18 09:06:12,642] multiqc [DEBUG ] No samples found: pychopper [2025-08-18 09:06:12,648] multiqc [DEBUG ] No samples found: pycoqc [2025-08-18 09:06:12,652] multiqc [DEBUG ] No samples found: minionqc [2025-08-18 09:06:12,657] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-18 09:06:12,661] multiqc [DEBUG ] No samples found: clusterflow [2025-08-18 09:06:12,666] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-18 09:06:12,672] multiqc [DEBUG ] No samples found: bclconvert [2025-08-18 09:06:12,680] multiqc [DEBUG ] No samples found: interop [2025-08-18 09:06:12,685] multiqc [DEBUG ] No samples found: ivar [2025-08-18 09:06:12,689] multiqc [DEBUG ] No samples found: flash [2025-08-18 09:06:12,694] multiqc [DEBUG ] No samples found: seqyclean [2025-08-18 09:06:12,701] multiqc [DEBUG ] No samples found: optitype [2025-08-18 09:06:12,866] multiqc [INFO ] Compressing plot data [2025-08-18 09:06:16,104] multiqc [INFO ] Report : multiqc_report.html [2025-08-18 09:06:16,104] multiqc [INFO ] Data : multiqc_data [2025-08-18 09:06:16,105] multiqc [DEBUG ] Moving data file from '/scratch/tmpvg0z3tkm/multiqc_data' to '/projectnb/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/G246_RNASEQ_v2_multiqc_report/multiqc_data' [2025-08-18 09:06:16,264] multiqc [INFO ] MultiQC complete [2025-08-18 09:06:16,264] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers