[2026-02-02 09:58:00,804] multiqc [DEBUG ] This is MultiQC v1.11 [2026-02-02 09:58:00,805] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-02-02 09:58:00,806] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-02-02 09:58:00,809] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-02-02 09:58:00,811] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G251_GalunLab/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-02-02 09:58:00,811] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-02-02 09:58:00,811] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-02-02 09:58:00,812] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G251_GalunLab/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G251_GalunLab/SAMPLES /projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G251_GalunLab/Scripts/06_CollectMetrics/ [2026-02-02 09:58:01,370] multiqc [WARNING] MultiQC Version v1.33 now available! [2026-02-02 09:58:01,370] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G251_GalunLab/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G251_GalunLab/SAMPLES /projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G251_GalunLab/Scripts/06_CollectMetrics/ [2026-02-02 09:58:01,370] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G251_GalunLab/Scripts/99_final_summary/G251_GalunLab_multiqc_report [2026-02-02 09:58:01,370] multiqc [DEBUG ] Template : default [2026-02-02 09:58:01,370] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-02-02 09:58:01,371] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-02-02 09:58:01,388] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpz05ma4ej [2026-02-02 09:58:01,990] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G251_GalunLab/SAMPLES [2026-02-02 09:58:01,991] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC [2026-02-02 09:58:01,991] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G251_GalunLab/Scripts/06_CollectMetrics [2026-02-02 09:58:02,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_B326_S8_R1_001.fastq.gz [2026-02-02 09:58:02,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M05_primary_unique.bam.bai [2026-02-02 09:58:02,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M05_primary_unique.bam [2026-02-02 09:58:02,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,785] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:02,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M05_SJ.out.tab [2026-02-02 09:58:05,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M05_marked_dup_metrics.txt [2026-02-02 09:58:05,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M05_marked_dup_metrics.txt [2026-02-02 09:58:05,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,160] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,167] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,167] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,167] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,168] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,168] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,168] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:05,192] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,141] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,148] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:06,170] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M05_featureCounts.out [2026-02-02 09:58:07,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M05_metrics [2026-02-02 09:58:07,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M05_metrics [2026-02-02 09:58:07,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M05_metrics [2026-02-02 09:58:07,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_B327_S9_R1_001.fastq.gz [2026-02-02 09:58:07,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:07,148] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M06_SJ.out.tab [2026-02-02 09:58:09,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M06_primary_unique.bam [2026-02-02 09:58:09,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M06_primary_unique.bam.bai [2026-02-02 09:58:09,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M06_marked_dup_metrics.txt [2026-02-02 09:58:09,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M06_marked_dup_metrics.txt [2026-02-02 09:58:09,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,703] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,704] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:09,722] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,686] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,691] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:10,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M06_featureCounts.out [2026-02-02 09:58:11,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M06_metrics [2026-02-02 09:58:11,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M06_metrics [2026-02-02 09:58:11,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M06_metrics [2026-02-02 09:58:11,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_B249_S13_R1_001.fastq.gz [2026-02-02 09:58:11,745] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M10_primary_unique.bam [2026-02-02 09:58:11,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M10_primary_unique.bam.bai [2026-02-02 09:58:11,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,790] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:11,796] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M10_SJ.out.tab [2026-02-02 09:58:14,073] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M10_marked_dup_metrics.txt [2026-02-02 09:58:14,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M10_marked_dup_metrics.txt [2026-02-02 09:58:14,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,147] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,153] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:14,174] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,105] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,105] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,105] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,105] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,106] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,106] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:15,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M10_featureCounts.out [2026-02-02 09:58:16,016] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M10_metrics [2026-02-02 09:58:16,019] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M10_metrics [2026-02-02 09:58:16,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M10_metrics [2026-02-02 09:58:16,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_WT42_S16_R1_001.fastq.gz [2026-02-02 09:58:16,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,152] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,158] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,158] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:16,159] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M07_SJ.out.tab [2026-02-02 09:58:18,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M07_primary_unique.bam.bai [2026-02-02 09:58:18,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M07_primary_unique.bam [2026-02-02 09:58:18,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M07_marked_dup_metrics.txt [2026-02-02 09:58:18,526] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M07_marked_dup_metrics.txt [2026-02-02 09:58:18,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,617] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:18,637] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,574] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,579] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,579] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,579] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,580] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,580] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,580] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,580] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:19,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M07_featureCounts.out [2026-02-02 09:58:20,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M07_metrics [2026-02-02 09:58:20,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M07_metrics [2026-02-02 09:58:20,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M07_metrics [2026-02-02 09:58:20,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_WT43_S17_R1_001.fastq.gz [2026-02-02 09:58:20,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M08_primary_unique.bam [2026-02-02 09:58:20,598] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M08_primary_unique.bam.bai [2026-02-02 09:58:20,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:20,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M08_SJ.out.tab [2026-02-02 09:58:23,055] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M08_marked_dup_metrics.txt [2026-02-02 09:58:23,058] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M08_marked_dup_metrics.txt [2026-02-02 09:58:23,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,130] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:23,149] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,159] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,165] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:24,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M08_featureCounts.out [2026-02-02 09:58:25,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M08_metrics [2026-02-02 09:58:25,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M08_metrics [2026-02-02 09:58:25,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M08_metrics [2026-02-02 09:58:25,122] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Mytal_wt20_S7_R1_001.fastq.gz [2026-02-02 09:58:25,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M15_primary_unique.bam.bai [2026-02-02 09:58:25,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:25,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M15_SJ.out.tab [2026-02-02 09:58:27,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M15_primary_unique.bam [2026-02-02 09:58:27,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M15_marked_dup_metrics.txt [2026-02-02 09:58:27,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M15_marked_dup_metrics.txt [2026-02-02 09:58:27,069] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:27,095] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,048] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,067] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M15_featureCounts.out [2026-02-02 09:58:28,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M15_metrics [2026-02-02 09:58:28,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M15_metrics [2026-02-02 09:58:28,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M15_metrics [2026-02-02 09:58:29,030] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Mytal_b314_S2_R1_001.fastq.gz [2026-02-02 09:58:29,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,128] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:29,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M16_SJ.out.tab [2026-02-02 09:58:31,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M16_primary_unique.bam.bai [2026-02-02 09:58:31,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M16_primary_unique.bam [2026-02-02 09:58:31,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M16_marked_dup_metrics.txt [2026-02-02 09:58:31,180] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M16_marked_dup_metrics.txt [2026-02-02 09:58:31,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,277] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,277] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:31,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:32,315] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M16_featureCounts.out [2026-02-02 09:58:33,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M16_metrics [2026-02-02 09:58:33,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M16_metrics [2026-02-02 09:58:33,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M16_metrics [2026-02-02 09:58:33,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_WT100_S12_R1_001.fastq.gz [2026-02-02 09:58:33,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:33,324] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M01_SJ.out.tab [2026-02-02 09:58:35,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M01_primary_unique.bam.bai [2026-02-02 09:58:35,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M01_primary_unique.bam [2026-02-02 09:58:35,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M01_marked_dup_metrics.txt [2026-02-02 09:58:35,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M01_marked_dup_metrics.txt [2026-02-02 09:58:35,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,945] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,945] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,951] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,951] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,951] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:35,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,923] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:36,942] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M01_featureCounts.out [2026-02-02 09:58:37,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M01_metrics [2026-02-02 09:58:37,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M01_metrics [2026-02-02 09:58:37,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M01_metrics [2026-02-02 09:58:37,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Mytal_b315_S3_R1_001.fastq.gz [2026-02-02 09:58:38,055] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,065] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,065] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,065] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,065] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,065] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,066] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,066] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,066] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:38,066] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M17_SJ.out.tab [2026-02-02 09:58:39,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M17_primary_unique.bam.bai [2026-02-02 09:58:39,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M17_primary_unique.bam [2026-02-02 09:58:39,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M17_marked_dup_metrics.txt [2026-02-02 09:58:39,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M17_marked_dup_metrics.txt [2026-02-02 09:58:40,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,069] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,070] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:40,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,004] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,019] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,019] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,025] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,025] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,025] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,026] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,026] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,026] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,026] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,047] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M17_featureCounts.out [2026-02-02 09:58:41,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M17_metrics [2026-02-02 09:58:41,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M17_metrics [2026-02-02 09:58:41,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M17_metrics [2026-02-02 09:58:41,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_WT59_S10_R1_001.fastq.gz [2026-02-02 09:58:42,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:42,090] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M02_SJ.out.tab [2026-02-02 09:58:44,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M02_primary_unique.bam.bai [2026-02-02 09:58:44,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M02_primary_unique.bam [2026-02-02 09:58:44,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M02_marked_dup_metrics.txt [2026-02-02 09:58:44,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M02_marked_dup_metrics.txt [2026-02-02 09:58:44,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,497] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,503] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,503] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,503] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,503] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,504] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,504] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,504] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:44,523] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,518] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,518] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,518] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,518] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,518] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:45,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M02_featureCounts.out [2026-02-02 09:58:46,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M02_metrics [2026-02-02 09:58:46,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M02_metrics [2026-02-02 09:58:46,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M02_metrics [2026-02-02 09:58:46,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Mytal_b316_S4_R1_001.fastq.gz [2026-02-02 09:58:46,630] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,640] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:46,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M18_SJ.out.tab [2026-02-02 09:58:48,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M18_primary_unique.bam.bai [2026-02-02 09:58:48,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M18_primary_unique.bam [2026-02-02 09:58:48,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M18_marked_dup_metrics.txt [2026-02-02 09:58:48,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M18_marked_dup_metrics.txt [2026-02-02 09:58:48,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:48,695] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,628] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:49,647] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M18_featureCounts.out [2026-02-02 09:58:50,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M18_metrics [2026-02-02 09:58:50,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M18_metrics [2026-02-02 09:58:50,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M18_metrics [2026-02-02 09:58:50,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_WT99_S11_R1_001.fastq.gz [2026-02-02 09:58:50,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,635] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,640] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,640] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,641] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,641] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,641] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,641] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,641] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:50,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M03_SJ.out.tab [2026-02-02 09:58:52,762] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M03_primary_unique.bam.bai [2026-02-02 09:58:52,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M03_primary_unique.bam [2026-02-02 09:58:52,826] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M03_marked_dup_metrics.txt [2026-02-02 09:58:52,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M03_marked_dup_metrics.txt [2026-02-02 09:58:52,905] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,909] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,909] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,916] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:52,935] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,902] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,906] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:53,929] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M03_featureCounts.out [2026-02-02 09:58:54,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M03_metrics [2026-02-02 09:58:54,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M03_metrics [2026-02-02 09:58:54,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M03_metrics [2026-02-02 09:58:54,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_B252_S14_R1_001.fastq.gz [2026-02-02 09:58:54,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M11_primary_unique.bam.bai [2026-02-02 09:58:55,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,011] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:55,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M11_SJ.out.tab [2026-02-02 09:58:57,501] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M11_primary_unique.bam [2026-02-02 09:58:57,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M11_marked_dup_metrics.txt [2026-02-02 09:58:57,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M11_marked_dup_metrics.txt [2026-02-02 09:58:57,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,585] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,585] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,586] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,586] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,586] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,586] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,586] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:57,604] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,539] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,539] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,540] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:58,559] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M11_featureCounts.out [2026-02-02 09:58:59,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M11_metrics [2026-02-02 09:58:59,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M11_metrics [2026-02-02 09:58:59,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M11_metrics [2026-02-02 09:58:59,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_B324_S15_R1_001.fastq.gz [2026-02-02 09:58:59,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:58:59,609] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M12_SJ.out.tab [2026-02-02 09:59:01,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M12_primary_unique.bam.bai [2026-02-02 09:59:02,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M12_primary_unique.bam [2026-02-02 09:59:02,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M12_marked_dup_metrics.txt [2026-02-02 09:59:02,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M12_marked_dup_metrics.txt [2026-02-02 09:59:02,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:02,118] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:03,096] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M12_featureCounts.out [2026-02-02 09:59:04,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M12_metrics [2026-02-02 09:59:04,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M12_metrics [2026-02-02 09:59:04,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M12_metrics [2026-02-02 09:59:04,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_WT44_S18_R1_001.fastq.gz [2026-02-02 09:59:04,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:04,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M09_SJ.out.tab [2026-02-02 09:59:06,464] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M09_primary_unique.bam [2026-02-02 09:59:06,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M09_primary_unique.bam.bai [2026-02-02 09:59:06,515] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M09_marked_dup_metrics.txt [2026-02-02 09:59:06,518] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M09_marked_dup_metrics.txt [2026-02-02 09:59:06,595] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,607] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:06,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:07,628] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M09_featureCounts.out [2026-02-02 09:59:08,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M09_metrics [2026-02-02 09:59:08,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M09_metrics [2026-02-02 09:59:08,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M09_metrics [2026-02-02 09:59:08,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Mytal_b318_S5_R1_001.fastq.gz [2026-02-02 09:59:08,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,711] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,718] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:08,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M13_SJ.out.tab [2026-02-02 09:59:10,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M13_primary_unique.bam.bai [2026-02-02 09:59:10,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M13_primary_unique.bam [2026-02-02 09:59:10,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M13_marked_dup_metrics.txt [2026-02-02 09:59:10,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M13_marked_dup_metrics.txt [2026-02-02 09:59:10,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:10,691] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:11,695] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M13_featureCounts.out [2026-02-02 09:59:12,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M13_metrics [2026-02-02 09:59:12,625] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M13_metrics [2026-02-02 09:59:12,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M13_metrics [2026-02-02 09:59:12,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Mytal_wt19_S6_R1_001.fastq.gz [2026-02-02 09:59:12,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M14_primary_unique.bam [2026-02-02 09:59:12,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:12,848] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M14_SJ.out.tab [2026-02-02 09:59:14,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M14_primary_unique.bam.bai [2026-02-02 09:59:14,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M14_marked_dup_metrics.txt [2026-02-02 09:59:14,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M14_marked_dup_metrics.txt [2026-02-02 09:59:14,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:14,728] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,742] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,742] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,742] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,743] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,743] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:15,763] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M14_featureCounts.out [2026-02-02 09:59:16,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M14_metrics [2026-02-02 09:59:16,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M14_metrics [2026-02-02 09:59:16,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M14_metrics [2026-02-02 09:59:16,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: MAY_B294_S7_R1_001.fastq.gz [2026-02-02 09:59:16,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,847] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,847] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:16,848] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M04_SJ.out.tab [2026-02-02 09:59:19,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M04_primary_unique.bam.bai [2026-02-02 09:59:19,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G251_M04_primary_unique.bam [2026-02-02 09:59:19,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M04_marked_dup_metrics.txt [2026-02-02 09:59:19,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M04_marked_dup_metrics.txt [2026-02-02 09:59:19,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,324] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:19,348] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,340] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:20,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G251_M04_featureCounts.out [2026-02-02 09:59:21,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G251_M04_metrics [2026-02-02 09:59:21,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G251_M04_metrics [2026-02-02 09:59:21,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G251_M04_metrics [2026-02-02 09:59:21,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:21,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:21,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:21,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-02 09:59:21,397] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-02 09:59:21,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-02 09:59:21,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-02-02 09:59:21,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-02-02 09:59:21,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-02-02 09:59:21,455] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-02-02 09:59:21,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-02-02 09:59:21,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-02-02 09:59:21,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-02-02 09:59:21,498] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M08.o2916559 [2026-02-02 09:59:21,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M08.o2916559 [2026-02-02 09:59:21,522] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M01.o2916552 [2026-02-02 09:59:21,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M01.o2916552 [2026-02-02 09:59:21,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M05.o2916556 [2026-02-02 09:59:21,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M05.o2916556 [2026-02-02 09:59:21,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M18.o2916569 [2026-02-02 09:59:21,586] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M18.o2916569 [2026-02-02 09:59:21,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M09.o2916560 [2026-02-02 09:59:21,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M09.o2916560 [2026-02-02 09:59:21,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M03.o2916554 [2026-02-02 09:59:21,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M03.o2916554 [2026-02-02 09:59:21,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M02.o2916553 [2026-02-02 09:59:21,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M02.o2916553 [2026-02-02 09:59:21,708] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M04.o2916555 [2026-02-02 09:59:21,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M04.o2916555 [2026-02-02 09:59:21,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M16.o2916567 [2026-02-02 09:59:21,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M16.o2916567 [2026-02-02 09:59:21,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M11.o2916562 [2026-02-02 09:59:21,769] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M11.o2916562 [2026-02-02 09:59:21,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M15.o2916566 [2026-02-02 09:59:21,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M15.o2916566 [2026-02-02 09:59:21,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M17.o2916568 [2026-02-02 09:59:21,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M17.o2916568 [2026-02-02 09:59:21,855] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M06.o2916557 [2026-02-02 09:59:21,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M06.o2916557 [2026-02-02 09:59:21,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M07.o2916558 [2026-02-02 09:59:21,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M07.o2916558 [2026-02-02 09:59:21,906] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M13.o2916564 [2026-02-02 09:59:21,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M13.o2916564 [2026-02-02 09:59:21,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M12.o2916563 [2026-02-02 09:59:21,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M12.o2916563 [2026-02-02 09:59:21,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M14.o2916565 [2026-02-02 09:59:21,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M14.o2916565 [2026-02-02 09:59:21,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M10.o2916561 [2026-02-02 09:59:21,997] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G251_GalunLab_G251_M10.o2916561 [2026-02-02 09:59:22,031] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-02-02 09:59:22,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-02-02 09:59:22,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,065] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,065] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,065] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,074] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,163] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,163] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,174] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,280] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,397] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,491] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,581] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,588] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,709] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,936] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:22,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,037] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,253] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,345] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,354] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,448] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,448] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,549] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,752] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,850] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-02-02 09:59:23,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:23,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:23,939] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:23,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:23,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-02 09:59:23,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-02-02 09:59:23,964] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-02-02 09:59:23,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-02-02 09:59:23,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-02 09:59:23,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-02 09:59:23,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-02 09:59:24,006] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-02-02 09:59:24,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-02-02 09:59:24,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M14.o2916700 [2026-02-02 09:59:24,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M14.o2916700 [2026-02-02 09:59:24,049] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M14.o2916700 [2026-02-02 09:59:24,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M14.o2916700 [2026-02-02 09:59:24,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M14.o2916700 [2026-02-02 09:59:24,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M13.o2916699 [2026-02-02 09:59:24,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M13.o2916699 [2026-02-02 09:59:24,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M13.o2916699 [2026-02-02 09:59:24,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M13.o2916699 [2026-02-02 09:59:24,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M13.o2916699 [2026-02-02 09:59:24,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M03.o2916689 [2026-02-02 09:59:24,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M03.o2916689 [2026-02-02 09:59:24,118] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M03.o2916689 [2026-02-02 09:59:24,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M03.o2916689 [2026-02-02 09:59:24,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M03.o2916689 [2026-02-02 09:59:24,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M18.o2916704 [2026-02-02 09:59:24,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M18.o2916704 [2026-02-02 09:59:24,161] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M18.o2916704 [2026-02-02 09:59:24,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M18.o2916704 [2026-02-02 09:59:24,167] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M18.o2916704 [2026-02-02 09:59:24,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M08.o2916694 [2026-02-02 09:59:24,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M08.o2916694 [2026-02-02 09:59:24,210] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M08.o2916694 [2026-02-02 09:59:24,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M08.o2916694 [2026-02-02 09:59:24,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M08.o2916694 [2026-02-02 09:59:24,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M01.o2916687 [2026-02-02 09:59:24,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M01.o2916687 [2026-02-02 09:59:24,261] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M01.o2916687 [2026-02-02 09:59:24,261] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M01.o2916687 [2026-02-02 09:59:24,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M01.o2916687 [2026-02-02 09:59:24,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M02.o2916688 [2026-02-02 09:59:24,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M02.o2916688 [2026-02-02 09:59:24,315] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M02.o2916688 [2026-02-02 09:59:24,315] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M02.o2916688 [2026-02-02 09:59:24,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M02.o2916688 [2026-02-02 09:59:24,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M15.o2916701 [2026-02-02 09:59:24,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M15.o2916701 [2026-02-02 09:59:24,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M15.o2916701 [2026-02-02 09:59:24,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M15.o2916701 [2026-02-02 09:59:24,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M15.o2916701 [2026-02-02 09:59:24,405] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M17.o2916703 [2026-02-02 09:59:24,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M17.o2916703 [2026-02-02 09:59:24,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M17.o2916703 [2026-02-02 09:59:24,409] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M17.o2916703 [2026-02-02 09:59:24,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M17.o2916703 [2026-02-02 09:59:24,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M05.o2916691 [2026-02-02 09:59:24,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M05.o2916691 [2026-02-02 09:59:24,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M05.o2916691 [2026-02-02 09:59:24,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M05.o2916691 [2026-02-02 09:59:24,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M05.o2916691 [2026-02-02 09:59:24,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M04.o2916690 [2026-02-02 09:59:24,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M04.o2916690 [2026-02-02 09:59:24,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M04.o2916690 [2026-02-02 09:59:24,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M04.o2916690 [2026-02-02 09:59:24,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M04.o2916690 [2026-02-02 09:59:24,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M09.o2916695 [2026-02-02 09:59:24,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M09.o2916695 [2026-02-02 09:59:24,545] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M09.o2916695 [2026-02-02 09:59:24,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M09.o2916695 [2026-02-02 09:59:24,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M09.o2916695 [2026-02-02 09:59:24,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M06.o2916692 [2026-02-02 09:59:24,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M06.o2916692 [2026-02-02 09:59:24,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M06.o2916692 [2026-02-02 09:59:24,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M06.o2916692 [2026-02-02 09:59:24,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M06.o2916692 [2026-02-02 09:59:24,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M07.o2916693 [2026-02-02 09:59:24,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M07.o2916693 [2026-02-02 09:59:24,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M07.o2916693 [2026-02-02 09:59:24,646] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M07.o2916693 [2026-02-02 09:59:24,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M07.o2916693 [2026-02-02 09:59:24,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M11.o2916697 [2026-02-02 09:59:24,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M11.o2916697 [2026-02-02 09:59:24,697] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M11.o2916697 [2026-02-02 09:59:24,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M11.o2916697 [2026-02-02 09:59:24,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M11.o2916697 [2026-02-02 09:59:24,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M12.o2916698 [2026-02-02 09:59:24,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M12.o2916698 [2026-02-02 09:59:24,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M12.o2916698 [2026-02-02 09:59:24,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M12.o2916698 [2026-02-02 09:59:24,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M12.o2916698 [2026-02-02 09:59:24,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M16.o2916702 [2026-02-02 09:59:24,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M16.o2916702 [2026-02-02 09:59:24,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M16.o2916702 [2026-02-02 09:59:24,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M16.o2916702 [2026-02-02 09:59:24,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M16.o2916702 [2026-02-02 09:59:24,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M10.o2916696 [2026-02-02 09:59:24,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M10.o2916696 [2026-02-02 09:59:24,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M10.o2916696 [2026-02-02 09:59:24,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M10.o2916696 [2026-02-02 09:59:24,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G251_GalunLab_G251_M10.o2916696 [2026-02-02 09:59:24,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,954] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:24,960] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-02-02 09:59:25,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-02 09:59:25,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-02 09:59:25,768] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-02 09:59:25,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-02 09:59:25,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-02 09:59:25,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-02 09:59:25,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-02 09:59:25,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-02 09:59:25,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-02 09:59:25,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-02 09:59:46,635] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-02-02 09:59:46,662] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-02-02 09:59:46,671] multiqc [DEBUG ] No samples found: custom_content [2026-02-02 09:59:46,700] multiqc [DEBUG ] No samples found: ccs [2026-02-02 09:59:46,726] multiqc [DEBUG ] No samples found: ngsderive [2026-02-02 09:59:46,752] multiqc [DEBUG ] No samples found: purple [2026-02-02 09:59:46,765] multiqc [DEBUG ] No samples found: conpair [2026-02-02 09:59:46,797] multiqc [DEBUG ] No samples found: lima [2026-02-02 09:59:46,826] multiqc [DEBUG ] No samples found: peddy [2026-02-02 09:59:46,862] multiqc [DEBUG ] No samples found: somalier [2026-02-02 09:59:46,893] multiqc [DEBUG ] No samples found: methylQA [2026-02-02 09:59:46,960] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-02-02 09:59:46,960] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-02-02 09:59:46,960] multiqc [DEBUG ] No samples found: mosdepth [2026-02-02 09:59:46,970] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-02-02 09:59:46,997] multiqc [DEBUG ] No samples found: qualimap [2026-02-02 09:59:47,027] multiqc [DEBUG ] No samples found: preseq [2026-02-02 09:59:47,049] multiqc [DEBUG ] No samples found: quast [2026-02-02 09:59:47,091] multiqc [DEBUG ] No samples found: qorts [2026-02-02 09:59:47,129] multiqc [DEBUG ] No samples found: rna_seqc [2026-02-02 09:59:47,168] multiqc [DEBUG ] No samples found: rockhopper [2026-02-02 09:59:47,197] multiqc [DEBUG ] No samples found: rsem [2026-02-02 09:59:47,318] multiqc.modules.rseqc.rseqc [INFO ] Found 18 infer_experiment reports [2026-02-02 09:59:47,358] multiqc [DEBUG ] No samples found: busco [2026-02-02 09:59:47,384] multiqc [DEBUG ] No samples found: bustools [2026-02-02 09:59:47,403] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-02-02 09:59:47,434] multiqc [DEBUG ] No samples found: gffcompare [2026-02-02 09:59:47,459] multiqc [DEBUG ] No samples found: disambiguate [2026-02-02 09:59:47,489] multiqc [DEBUG ] No samples found: supernova [2026-02-02 09:59:47,605] multiqc [DEBUG ] No samples found: deeptools [2026-02-02 09:59:47,629] multiqc [DEBUG ] No samples found: sargasso [2026-02-02 09:59:47,673] multiqc [DEBUG ] No samples found: verifybamid [2026-02-02 09:59:47,702] multiqc [DEBUG ] No samples found: mirtrace [2026-02-02 09:59:47,725] multiqc [DEBUG ] No samples found: happy [2026-02-02 09:59:47,753] multiqc [DEBUG ] No samples found: mirtop [2026-02-02 09:59:47,801] multiqc [DEBUG ] No samples found: sambamba [2026-02-02 09:59:47,828] multiqc [DEBUG ] No samples found: homer [2026-02-02 09:59:47,865] multiqc [DEBUG ] No samples found: hops [2026-02-02 09:59:47,890] multiqc [DEBUG ] No samples found: macs2 [2026-02-02 09:59:47,904] multiqc [DEBUG ] No samples found: theta2 [2026-02-02 09:59:47,928] multiqc [DEBUG ] No samples found: snpeff [2026-02-02 09:59:47,986] multiqc [DEBUG ] No samples found: gatk [2026-02-02 09:59:47,997] multiqc [DEBUG ] No samples found: htseq [2026-02-02 09:59:48,031] multiqc [DEBUG ] No samples found: bcftools [2026-02-02 09:59:48,093] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M05_sorted [2026-02-02 09:59:48,098] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M06_sorted [2026-02-02 09:59:48,115] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M10_sorted [2026-02-02 09:59:48,121] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M07_sorted [2026-02-02 09:59:48,130] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M08_sorted [2026-02-02 09:59:48,151] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M15_sorted [2026-02-02 09:59:48,159] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M16_sorted [2026-02-02 09:59:48,171] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M01_sorted [2026-02-02 09:59:48,185] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M17_sorted [2026-02-02 09:59:48,189] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M02_sorted [2026-02-02 09:59:48,192] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M18_sorted [2026-02-02 09:59:48,194] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M03_sorted [2026-02-02 09:59:48,196] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M11_sorted [2026-02-02 09:59:48,201] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M12_sorted [2026-02-02 09:59:48,204] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M09_sorted [2026-02-02 09:59:48,210] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M13_sorted [2026-02-02 09:59:48,214] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M14_sorted [2026-02-02 09:59:48,219] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G251_M04_sorted [2026-02-02 09:59:48,219] multiqc.modules.featureCounts.feature_counts [INFO ] Found 18 reports [2026-02-02 09:59:48,287] multiqc [DEBUG ] No samples found: fgbio [2026-02-02 09:59:48,456] multiqc [DEBUG ] No samples found: dragen [2026-02-02 09:59:48,489] multiqc [DEBUG ] No samples found: dedup [2026-02-02 09:59:48,517] multiqc [DEBUG ] No samples found: damageprofiler [2026-02-02 09:59:48,764] multiqc [DEBUG ] No samples found: biobambam2 [2026-02-02 09:59:48,794] multiqc [DEBUG ] No samples found: jcvi [2026-02-02 09:59:48,809] multiqc [DEBUG ] No samples found: mtnucratio [2026-02-02 09:59:48,940] multiqc.modules.picard.picard [INFO ] Found 18 MarkDuplicates reports [2026-02-02 09:59:49,030] multiqc.modules.picard.picard [INFO ] Found 18 RnaSeqMetrics reports [2026-02-02 09:59:49,055] multiqc [DEBUG ] No samples found: vep [2026-02-02 09:59:49,082] multiqc [DEBUG ] No samples found: sentieon [2026-02-02 09:59:49,105] multiqc [DEBUG ] No samples found: prokka [2026-02-02 09:59:49,139] multiqc [DEBUG ] No samples found: qc3C [2026-02-02 09:59:49,173] multiqc [DEBUG ] No samples found: nanostat [2026-02-02 09:59:49,194] multiqc [DEBUG ] No samples found: samblaster [2026-02-02 09:59:49,422] multiqc.modules.samtools.samtools [INFO ] Found 54 flagstat reports [2026-02-02 09:59:49,461] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-02-02 09:59:49,472] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-02-02 09:59:49,500] multiqc [DEBUG ] No samples found: bamtools [2026-02-02 09:59:49,510] multiqc [DEBUG ] No samples found: jellyfish [2026-02-02 09:59:49,536] multiqc [DEBUG ] No samples found: vcftools [2026-02-02 09:59:49,565] multiqc [DEBUG ] No samples found: longranger [2026-02-02 09:59:49,602] multiqc [DEBUG ] No samples found: stacks [2026-02-02 09:59:49,632] multiqc [DEBUG ] No samples found: varscan2 [2026-02-02 09:59:49,667] multiqc [DEBUG ] No samples found: snippy [2026-02-02 09:59:49,738] multiqc [DEBUG ] No samples found: bbmap [2026-02-02 09:59:49,770] multiqc [DEBUG ] No samples found: bismark [2026-02-02 09:59:49,808] multiqc [DEBUG ] No samples found: biscuit [2026-02-02 09:59:49,860] multiqc [DEBUG ] No samples found: hicexplorer [2026-02-02 09:59:49,881] multiqc [DEBUG ] No samples found: hicup [2026-02-02 09:59:49,906] multiqc [DEBUG ] No samples found: hicpro [2026-02-02 09:59:49,922] multiqc [DEBUG ] No samples found: salmon [2026-02-02 09:59:49,955] multiqc [DEBUG ] No samples found: kallisto [2026-02-02 09:59:49,994] multiqc [DEBUG ] No samples found: slamdunk [2026-02-02 09:59:52,077] multiqc.modules.star.star [INFO ] Found 18 reports and 18 gene count files [2026-02-02 09:59:52,117] multiqc [DEBUG ] No samples found: hisat2 [2026-02-02 09:59:52,152] multiqc [DEBUG ] No samples found: tophat [2026-02-02 09:59:52,181] multiqc [DEBUG ] No samples found: bowtie2 [2026-02-02 09:59:52,210] multiqc [DEBUG ] No samples found: bowtie1 [2026-02-02 09:59:52,237] multiqc [DEBUG ] No samples found: snpsplit [2026-02-02 09:59:52,262] multiqc [DEBUG ] No samples found: odgi [2026-02-02 09:59:52,289] multiqc [DEBUG ] No samples found: pangolin [2026-02-02 09:59:52,299] multiqc [DEBUG ] No samples found: kat [2026-02-02 09:59:52,308] multiqc [DEBUG ] No samples found: leehom [2026-02-02 09:59:52,346] multiqc [DEBUG ] No samples found: adapterRemoval [2026-02-02 09:59:52,368] multiqc [DEBUG ] No samples found: clipandmerge [2026-02-02 09:59:52,404] multiqc [DEBUG ] No samples found: cutadapt [2026-02-02 09:59:52,425] multiqc [DEBUG ] No samples found: flexbar [2026-02-02 09:59:52,465] multiqc [DEBUG ] No samples found: kaiju [2026-02-02 09:59:52,487] multiqc [DEBUG ] No samples found: kraken [2026-02-02 09:59:52,517] multiqc [DEBUG ] No samples found: malt [2026-02-02 09:59:52,541] multiqc [DEBUG ] No samples found: trimmomatic [2026-02-02 09:59:52,574] multiqc [DEBUG ] No samples found: sickle [2026-02-02 09:59:52,607] multiqc [DEBUG ] No samples found: skewer [2026-02-02 09:59:52,623] multiqc [DEBUG ] No samples found: sortmerna [2026-02-02 09:59:52,632] multiqc [DEBUG ] No samples found: biobloomtools [2026-02-02 09:59:52,653] multiqc [DEBUG ] No samples found: fastq_screen [2026-02-02 09:59:52,674] multiqc [DEBUG ] No samples found: afterqc [2026-02-02 09:59:52,715] multiqc [DEBUG ] No samples found: fastp [2026-02-02 09:59:53,971] multiqc.modules.fastqc.fastqc [INFO ] Found 18 reports [2026-02-02 09:59:53,972] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-02-02 09:59:54,508] multiqc [DEBUG ] No samples found: pychopper [2026-02-02 09:59:54,537] multiqc [DEBUG ] No samples found: pycoqc [2026-02-02 09:59:54,584] multiqc [DEBUG ] No samples found: minionqc [2026-02-02 09:59:54,606] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-02-02 09:59:54,635] multiqc [DEBUG ] No samples found: clusterflow [2026-02-02 09:59:54,713] multiqc [DEBUG ] No samples found: bcl2fastq [2026-02-02 09:59:54,736] multiqc [DEBUG ] No samples found: bclconvert [2026-02-02 09:59:54,786] multiqc [DEBUG ] No samples found: interop [2026-02-02 09:59:54,814] multiqc [DEBUG ] No samples found: ivar [2026-02-02 09:59:54,851] multiqc [DEBUG ] No samples found: flash [2026-02-02 09:59:54,885] multiqc [DEBUG ] No samples found: seqyclean [2026-02-02 09:59:54,905] multiqc [DEBUG ] No samples found: optitype [2026-02-02 09:59:54,971] multiqc [INFO ] Compressing plot data [2026-02-02 09:59:55,333] multiqc [INFO ] Report : multiqc_report.html [2026-02-02 09:59:55,333] multiqc [INFO ] Data : multiqc_data [2026-02-02 09:59:55,334] multiqc [DEBUG ] Moving data file from '/scratch/tmpz05ma4ej/multiqc_data' to '/projectnb/wax-dk/max/G251_GalunLab/Scripts/99_final_summary/G251_GalunLab_multiqc_report/multiqc_data' [2026-02-02 09:59:56,086] multiqc [INFO ] MultiQC complete