{ "report_data_sources": { "RSeQC": { "infer_experiment": { "G251_M05_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M05/Read_Strandness/G251_M05_Read_Strandness.txt", "G251_M06_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M06/Read_Strandness/G251_M06_Read_Strandness.txt", "G251_M10_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M10/Read_Strandness/G251_M10_Read_Strandness.txt", "G251_M07_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M07/Read_Strandness/G251_M07_Read_Strandness.txt", "G251_M08_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M08/Read_Strandness/G251_M08_Read_Strandness.txt", "G251_M15_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M15/Read_Strandness/G251_M15_Read_Strandness.txt", "G251_M16_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M16/Read_Strandness/G251_M16_Read_Strandness.txt", "G251_M01_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M01/Read_Strandness/G251_M01_Read_Strandness.txt", "G251_M17_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M17/Read_Strandness/G251_M17_Read_Strandness.txt", "G251_M02_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M02/Read_Strandness/G251_M02_Read_Strandness.txt", "G251_M18_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M18/Read_Strandness/G251_M18_Read_Strandness.txt", "G251_M03_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M03/Read_Strandness/G251_M03_Read_Strandness.txt", "G251_M11_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M11/Read_Strandness/G251_M11_Read_Strandness.txt", "G251_M12_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/Read_Strandness/G251_M12_Read_Strandness.txt", "G251_M09_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/Read_Strandness/G251_M09_Read_Strandness.txt", "G251_M13_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M13/Read_Strandness/G251_M13_Read_Strandness.txt", "G251_M14_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M14/Read_Strandness/G251_M14_Read_Strandness.txt", "G251_M04_Read_Strandness": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M04/Read_Strandness/G251_M04_Read_Strandness.txt" } }, "featureCounts": { "all_sections": { "G251_M05_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M05/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M05_featureCounts.out.summary", "G251_M06_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M06/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M06_featureCounts.out.summary", "G251_M10_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M10_featureCounts.out.summary", 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"/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M02_featureCounts.out.summary", "G251_M18_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M18/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M18_featureCounts.out.summary", "G251_M03_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M03_featureCounts.out.summary", "G251_M11_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M11_featureCounts.out.summary", "G251_M12_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M12_featureCounts.out.summary", "G251_M09_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M09_featureCounts.out.summary", "G251_M13_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M13/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M13_featureCounts.out.summary", "G251_M14_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M14/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M14_featureCounts.out.summary", "G251_M04_sorted": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G251_M04_featureCounts.out.summary" } }, "Picard": { "DuplicationMetrics": { "G251_M05_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M05/CollectDuplicates/G251_M05_marked_dup_metrics.txt", "G251_M06_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M06/CollectDuplicates/G251_M06_marked_dup_metrics.txt", "G251_M10_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M10/CollectDuplicates/G251_M10_marked_dup_metrics.txt", "G251_M07_primary_unique": 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"/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M01/CollectRnaSeqMetrics/G251_M01_metrics", "G251_M17_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M17/CollectRnaSeqMetrics/G251_M17_metrics", "G251_M02_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M02/CollectRnaSeqMetrics/G251_M02_metrics", "G251_M18_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M18/CollectRnaSeqMetrics/G251_M18_metrics", "G251_M03_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M03/CollectRnaSeqMetrics/G251_M03_metrics", "G251_M11_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M11/CollectRnaSeqMetrics/G251_M11_metrics", "G251_M12_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/CollectRnaSeqMetrics/G251_M12_metrics", "G251_M09_primary_unique": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/CollectRnaSeqMetrics/G251_M09_metrics", "G251_M13_primary_unique": 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"/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/aligner/G251_M12_statistics_for_primary_reads.txt", "G251_M12_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/aligner/G251_M12_statistics_for_primary_unique_reads.txt", "G251_M09_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/aligner/G251_M09_statistics_for_primary_unique_reads.txt", "G251_M09_statistics_for_primary_reads": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/aligner/G251_M09_statistics_for_primary_reads.txt", "G251_M09_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/aligner/G251_M09_statistics_for_all_accepted_reads.txt", "G251_M13_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M13/aligner/G251_M13_statistics_for_primary_unique_reads.txt", "G251_M13_statistics_for_all_accepted_reads": 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"G251_M16_G251_M16": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M16/aligner/G251_M16_G251_M16_Log.final.out", "G251_M01_G251_M01": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M01/aligner/G251_M01_G251_M01_Log.final.out", "G251_M17_G251_M17": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M17/aligner/G251_M17_G251_M17_Log.final.out", "G251_M02_G251_M02": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M02/aligner/G251_M02_G251_M02_Log.final.out", "G251_M18_G251_M18": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M18/aligner/G251_M18_G251_M18_Log.final.out", "G251_M03_G251_M03": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M03/aligner/G251_M03_G251_M03_Log.final.out", "G251_M11_G251_M11": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M11/aligner/G251_M11_G251_M11_Log.final.out", "G251_M12_G251_M12": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/aligner/G251_M12_G251_M12_Log.final.out", "G251_M09_G251_M09": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/aligner/G251_M09_G251_M09_Log.final.out", "G251_M13_G251_M13": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M13/aligner/G251_M13_G251_M13_Log.final.out", "G251_M14_G251_M14": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M14/aligner/G251_M14_G251_M14_Log.final.out", "G251_M04_G251_M04": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M04/aligner/G251_M04_G251_M04_Log.final.out" }, "ReadsPerGene": { "G251_M05": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M05/aligner/G251_M05_ReadsPerGene.out.tab", "G251_M06": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M06/aligner/G251_M06_ReadsPerGene.out.tab", "G251_M10": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M10/aligner/G251_M10_ReadsPerGene.out.tab", "G251_M07": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M07/aligner/G251_M07_ReadsPerGene.out.tab", "G251_M08": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M08/aligner/G251_M08_ReadsPerGene.out.tab", "G251_M15": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M15/aligner/G251_M15_ReadsPerGene.out.tab", "G251_M16": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M16/aligner/G251_M16_ReadsPerGene.out.tab", "G251_M01": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M01/aligner/G251_M01_ReadsPerGene.out.tab", "G251_M17": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M17/aligner/G251_M17_ReadsPerGene.out.tab", "G251_M02": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M02/aligner/G251_M02_ReadsPerGene.out.tab", "G251_M18": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M18/aligner/G251_M18_ReadsPerGene.out.tab", "G251_M03": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M03/aligner/G251_M03_ReadsPerGene.out.tab", "G251_M11": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M11/aligner/G251_M11_ReadsPerGene.out.tab", "G251_M12": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M12/aligner/G251_M12_ReadsPerGene.out.tab", "G251_M09": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M09/aligner/G251_M09_ReadsPerGene.out.tab", "G251_M13": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M13/aligner/G251_M13_ReadsPerGene.out.tab", "G251_M14": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M14/aligner/G251_M14_ReadsPerGene.out.tab", "G251_M04": "/projectnb/wax-dk/max/G251_GalunLab/SAMPLES/G251_M04/aligner/G251_M04_ReadsPerGene.out.tab" } }, "FastQC": { "all_sections": { "MAY_WT44_S18_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M09_FASTQC_R1/fastqc_data.txt", "MAY_B249_S13_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M10_FASTQC_R1/fastqc_data.txt", "MAY_B327_S9_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M06_FASTQC_R1/fastqc_data.txt", "Mytal_b314_S2_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M16_FASTQC_R1/fastqc_data.txt", "MAY_WT99_S11_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M03_FASTQC_R1/fastqc_data.txt", "Mytal_b318_S5_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M13_FASTQC_R1/fastqc_data.txt", "MAY_WT43_S17_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M08_FASTQC_R1/fastqc_data.txt", "Mytal_wt20_S7_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M15_FASTQC_R1/fastqc_data.txt", "Mytal_wt19_S6_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M14_FASTQC_R1/fastqc_data.txt", "MAY_B324_S15_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M12_FASTQC_R1/fastqc_data.txt", "Mytal_b315_S3_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M17_FASTQC_R1/fastqc_data.txt", "MAY_B294_S7_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M04_FASTQC_R1/fastqc_data.txt", "MAY_WT100_S12_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M01_FASTQC_R1/fastqc_data.txt", "MAY_WT59_S10_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M02_FASTQC_R1/fastqc_data.txt", "Mytal_b316_S4_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M18_FASTQC_R1/fastqc_data.txt", "MAY_B252_S14_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M11_FASTQC_R1/fastqc_data.txt", "MAY_B326_S8_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M05_FASTQC_R1/fastqc_data.txt", "MAY_WT42_S16_R1_001": "/projectnb2/wax-dk/max/G251_GalunLab/Scripts/03_FASTQC/Job_Summary/G251_M07_FASTQC_R1/fastqc_data.txt" } } }, "report_general_stats_data": [ { "G251_M05_sorted": { "Total": 41872223, "Assigned": 38472028, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 3400195, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 91.8795928269679 }, "G251_M06_sorted": { "Total": 50955739, "Assigned": 46202277, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4753462, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 90.67139032170644 }, "G251_M10_sorted": { "Total": 35514901, "Assigned": 31741129, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 3773772, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 89.37411651520583 }, "G251_M07_sorted": { "Total": 39565999, "Assigned": 35598837, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 3967162, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 89.97330510977368 }, "G251_M08_sorted": { "Total": 42085281, "Assigned": 37803503, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4281778, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 89.82594888697547 }, "G251_M15_sorted": { "Total": 26067828, "Assigned": 23870099, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 2197729, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 91.56919019106617 }, "G251_M16_sorted": { "Total": 25575707, "Assigned": 23538496, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 2037211, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 92.03458578877213 }, "G251_M01_sorted": { "Total": 50553418, "Assigned": 45377290, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 5176128, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 89.76107213957323 }, "G251_M17_sorted": { "Total": 24658573, "Assigned": 22796660, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1861913, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 92.44922648200283 }, "G251_M02_sorted": { "Total": 44211054, "Assigned": 40105831, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4105223, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 90.71448737684472 }, "G251_M18_sorted": { "Total": 25415710, "Assigned": 23455975, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1959735, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 92.28927698655674 }, "G251_M03_sorted": { "Total": 34340010, "Assigned": 29641673, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4698337, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 86.31818394927666 }, "G251_M11_sorted": { "Total": 44069886, "Assigned": 39489671, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4580215, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 89.6069279598318 }, "G251_M12_sorted": { "Total": 45329483, "Assigned": 40024739, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 5304744, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 88.29736487398279 }, "G251_M09_sorted": { "Total": 40770973, "Assigned": 36755530, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 4015443, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 90.15122106602655 }, "G251_M13_sorted": { "Total": 24413188, "Assigned": 22622527, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1790661, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 92.66518981461986 }, "G251_M14_sorted": { "Total": 23436665, "Assigned": 21585246, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1851419, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 92.1003308277863 }, "G251_M04_sorted": { "Total": 46175266, "Assigned": 42204565, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 3970701, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 91.40080535756957 } }, 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