[2026-02-28 19:45:22,027] multiqc [DEBUG ] This is MultiQC v1.11 [2026-02-28 19:45:22,028] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-02-28 19:45:22,028] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-02-28 19:45:22,028] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-02-28 19:45:22,030] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-02-28 19:45:22,030] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-02-28 19:45:22,031] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-02-28 19:45:22,031] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/SAMPLES /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/06_CollectMetrics/ [2026-02-28 19:45:22,646] multiqc [WARNING] MultiQC Version v1.33 now available! [2026-02-28 19:45:22,646] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/SAMPLES /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/06_CollectMetrics/ [2026-02-28 19:45:22,646] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/G253_RNASEQ_DevinKenney_multiqc_report [2026-02-28 19:45:22,646] multiqc [DEBUG ] Template : default [2026-02-28 19:45:22,646] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-02-28 19:45:22,647] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-02-28 19:45:22,648] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmptux75oka [2026-02-28 19:45:23,000] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/SAMPLES [2026-02-28 19:45:23,000] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/03_FASTQC [2026-02-28 19:45:23,000] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/06_CollectMetrics [2026-02-28 19:45:23,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 42_R2_001.fastq.gz [2026-02-28 19:45:23,218] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 42_R1_001.fastq.gz [2026-02-28 19:45:23,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,357] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,357] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,357] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,357] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,357] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,358] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:23,358] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-02-28 19:45:26,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-02-28 19:45:26,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-02-28 19:45:26,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-02-28 19:45:26,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-02-28 19:45:26,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-02-28 19:45:26,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M42_hist.pdf [2026-02-28 19:45:26,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:26,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:26,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:26,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:26,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:26,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,310] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:26,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,318] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,318] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,319] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:27,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-02-28 19:45:28,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:28,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:28,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_metrics [2026-02-28 19:45:28,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 40_R2_001.fastq.gz [2026-02-28 19:45:28,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 40_R1_001.fastq.gz [2026-02-28 19:45:28,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:28,335] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-02-28 19:45:30,974] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-02-28 19:45:30,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-02-28 19:45:30,979] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-02-28 19:45:30,979] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-02-28 19:45:30,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-02-28 19:45:31,006] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:31,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:31,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:31,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:31,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:31,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M40_hist.pdf [2026-02-28 19:45:31,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,163] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,163] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,170] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:31,188] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,109] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,114] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,114] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,121] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,121] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,122] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,122] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,122] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,122] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,122] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:32,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-02-28 19:45:33,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:33,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:33,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_metrics [2026-02-28 19:45:33,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 53_R1_001.fastq.gz [2026-02-28 19:45:33,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 53_R2_001.fastq.gz [2026-02-28 19:45:33,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,233] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,234] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,240] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,240] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,240] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,241] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,241] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,241] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,241] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,241] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:33,241] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-02-28 19:45:35,845] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-02-28 19:45:35,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-02-28 19:45:35,849] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-02-28 19:45:35,849] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-02-28 19:45:35,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-02-28 19:45:35,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M53_hist.pdf [2026-02-28 19:45:35,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:35,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:35,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:35,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:35,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:35,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,986] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:35,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,011] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,920] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,926] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,927] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:36,945] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-02-28 19:45:37,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:37,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:37,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_metrics [2026-02-28 19:45:37,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 51_R1_001.fastq.gz [2026-02-28 19:45:37,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 51_R2_001.fastq.gz [2026-02-28 19:45:38,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,057] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,058] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,058] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:38,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-02-28 19:45:40,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-02-28 19:45:40,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-02-28 19:45:40,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-02-28 19:45:40,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-02-28 19:45:40,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-02-28 19:45:40,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M51_hist.pdf [2026-02-28 19:45:40,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:40,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:40,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:40,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:40,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:40,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:40,856] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:41,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-02-28 19:45:42,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:42,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:42,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_metrics [2026-02-28 19:45:42,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 39_R1_001.fastq.gz [2026-02-28 19:45:42,707] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 39_R2_001.fastq.gz [2026-02-28 19:45:42,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,778] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:42,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-02-28 19:45:45,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-02-28 19:45:45,419] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-02-28 19:45:45,419] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-02-28 19:45:45,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-02-28 19:45:45,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-02-28 19:45:45,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:45,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:45,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:45,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:45,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:45,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M39_hist.pdf [2026-02-28 19:45:45,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,607] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:45,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,577] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,577] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,578] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,578] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,578] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,578] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,578] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:46,596] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-02-28 19:45:47,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:47,478] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:47,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_metrics [2026-02-28 19:45:47,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 37_R1_001.fastq.gz [2026-02-28 19:45:47,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 37_R2_001.fastq.gz [2026-02-28 19:45:47,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,633] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,638] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,638] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,638] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,638] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,639] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:47,639] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-02-28 19:45:50,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-02-28 19:45:50,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-02-28 19:45:50,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-02-28 19:45:50,496] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-02-28 19:45:50,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-02-28 19:45:50,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:50,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:50,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:50,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:50,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:50,596] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M37_hist.pdf [2026-02-28 19:45:50,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,625] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:50,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,567] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,572] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,585] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,585] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,585] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,585] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,585] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:51,612] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-02-28 19:45:52,506] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:52,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:52,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_metrics [2026-02-28 19:45:52,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 48_R2_001.fastq.gz [2026-02-28 19:45:52,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 48_R1_001.fastq.gz [2026-02-28 19:45:52,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:52,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-02-28 19:45:55,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-02-28 19:45:55,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-02-28 19:45:55,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-02-28 19:45:55,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-02-28 19:45:55,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-02-28 19:45:55,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:55,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:55,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:55,335] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:55,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:55,434] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M48_hist.pdf [2026-02-28 19:45:55,506] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,511] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:55,535] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,481] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,481] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,487] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,487] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,487] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,487] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,488] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,488] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,488] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:56,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-02-28 19:45:57,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:57,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:57,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_metrics [2026-02-28 19:45:57,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 59_R2_001.fastq.gz [2026-02-28 19:45:57,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 59_R1_001.fastq.gz [2026-02-28 19:45:57,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,516] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,523] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,523] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:45:57,523] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-02-28 19:46:00,268] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-02-28 19:46:00,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-02-28 19:46:00,273] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-02-28 19:46:00,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-02-28 19:46:00,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-02-28 19:46:00,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M59_hist.pdf [2026-02-28 19:46:00,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:00,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:00,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:00,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:00,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:00,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,429] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,434] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:00,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,377] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:01,397] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-02-28 19:46:02,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:02,294] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:02,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_metrics [2026-02-28 19:46:02,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R1_001.fastq.gz [2026-02-28 19:46:02,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R2_001.fastq.gz [2026-02-28 19:46:02,377] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:02,388] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-02-28 19:46:05,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-02-28 19:46:05,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-02-28 19:46:05,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-02-28 19:46:05,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-02-28 19:46:05,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-02-28 19:46:05,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M32_hist.pdf [2026-02-28 19:46:05,228] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:05,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:05,230] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:05,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:05,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:05,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,357] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:05,377] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,277] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,282] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,290] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,290] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,291] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,291] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,291] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,291] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,291] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:06,312] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-02-28 19:46:07,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:07,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:07,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_metrics [2026-02-28 19:46:07,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 43_R1_001.fastq.gz [2026-02-28 19:46:07,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 43_R2_001.fastq.gz [2026-02-28 19:46:07,304] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:07,315] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-02-28 19:46:09,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-02-28 19:46:09,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-02-28 19:46:09,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-02-28 19:46:09,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-02-28 19:46:09,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-02-28 19:46:09,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:10,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:10,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:10,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:10,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:10,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M43_hist.pdf [2026-02-28 19:46:10,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,156] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:10,175] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,101] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,118] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-02-28 19:46:11,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:11,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:11,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_metrics [2026-02-28 19:46:12,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 56_R2_001.fastq.gz [2026-02-28 19:46:12,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 56_R1_001.fastq.gz [2026-02-28 19:46:12,117] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:12,127] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-02-28 19:46:14,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-02-28 19:46:14,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-02-28 19:46:14,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-02-28 19:46:14,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-02-28 19:46:14,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-02-28 19:46:14,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M56_hist.pdf [2026-02-28 19:46:14,897] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:14,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:14,900] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:14,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:14,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:15,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,038] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:15,989] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:16,006] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-02-28 19:46:16,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:16,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:16,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_metrics [2026-02-28 19:46:16,976] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 54_R2_001.fastq.gz [2026-02-28 19:46:16,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 54_R1_001.fastq.gz [2026-02-28 19:46:17,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,018] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:17,046] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-02-28 19:46:18,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-02-28 19:46:18,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-02-28 19:46:18,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-02-28 19:46:18,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-02-28 19:46:18,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-02-28 19:46:18,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:18,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:18,549] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:18,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:18,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:18,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M54_hist.pdf [2026-02-28 19:46:18,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,631] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,637] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,637] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,637] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,638] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,638] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:18,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,565] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,565] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,569] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,569] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,570] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,570] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,570] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:19,589] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-02-28 19:46:20,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:20,478] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:20,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_metrics [2026-02-28 19:46:20,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 62_R2_001.fastq.gz [2026-02-28 19:46:20,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 62_R1_001.fastq.gz [2026-02-28 19:46:20,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:20,676] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-02-28 19:46:23,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-02-28 19:46:23,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-02-28 19:46:23,399] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-02-28 19:46:23,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-02-28 19:46:23,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-02-28 19:46:23,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M62_hist.pdf [2026-02-28 19:46:23,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:23,425] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:23,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:23,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:23,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:23,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:23,577] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,511] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:24,530] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-02-28 19:46:25,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:25,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:25,407] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_metrics [2026-02-28 19:46:25,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 60_R1_001.fastq.gz [2026-02-28 19:46:25,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 60_R2_001.fastq.gz [2026-02-28 19:46:25,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:25,541] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-02-28 19:46:28,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-02-28 19:46:28,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-02-28 19:46:28,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-02-28 19:46:28,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-02-28 19:46:28,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-02-28 19:46:28,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M60_hist.pdf [2026-02-28 19:46:28,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:28,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:28,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:28,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:28,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:28,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,476] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,476] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,483] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,484] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:28,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,435] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,435] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,439] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,439] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,440] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,440] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,440] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,440] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,440] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:29,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-02-28 19:46:30,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:30,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:30,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_metrics [2026-02-28 19:46:30,386] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 38_R1_001.fastq.gz [2026-02-28 19:46:30,386] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 38_R2_001.fastq.gz [2026-02-28 19:46:30,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:30,497] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-02-28 19:46:33,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-02-28 19:46:33,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-02-28 19:46:33,019] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-02-28 19:46:33,019] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-02-28 19:46:33,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-02-28 19:46:33,040] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M38_hist.pdf [2026-02-28 19:46:33,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:33,047] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:33,047] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:33,047] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:33,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:33,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,167] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:33,193] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,141] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:34,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-02-28 19:46:35,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:35,079] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:35,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_metrics [2026-02-28 19:46:35,120] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 49_R1_001.fastq.gz [2026-02-28 19:46:35,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 49_R2_001.fastq.gz [2026-02-28 19:46:35,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:35,235] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-02-28 19:46:37,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-02-28 19:46:37,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-02-28 19:46:37,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-02-28 19:46:37,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-02-28 19:46:37,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-02-28 19:46:37,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M49_hist.pdf [2026-02-28 19:46:37,920] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:37,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:37,923] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:37,923] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:37,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:38,054] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,058] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,058] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,063] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:38,082] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,017] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,035] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-02-28 19:46:39,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:39,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:39,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_metrics [2026-02-28 19:46:40,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 35_R2_001.fastq.gz [2026-02-28 19:46:40,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 35_R1_001.fastq.gz [2026-02-28 19:46:40,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,117] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:40,122] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-02-28 19:46:42,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-02-28 19:46:42,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-02-28 19:46:42,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-02-28 19:46:42,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-02-28 19:46:42,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-02-28 19:46:42,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:42,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:42,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:42,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:42,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:43,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M35_hist.pdf [2026-02-28 19:46:43,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,120] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,126] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,126] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,127] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,127] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,127] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,127] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,127] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:43,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,084] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,085] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,085] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,085] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,085] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,085] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-02-28 19:46:44,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:44,987] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:45,008] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_metrics [2026-02-28 19:46:45,052] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 33_R1_001.fastq.gz [2026-02-28 19:46:45,053] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 33_R2_001.fastq.gz [2026-02-28 19:46:45,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,105] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,106] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,106] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,110] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,110] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,110] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,111] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:45,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-02-28 19:46:47,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-02-28 19:46:47,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-02-28 19:46:47,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-02-28 19:46:47,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-02-28 19:46:47,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-02-28 19:46:47,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M33_hist.pdf [2026-02-28 19:46:47,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:47,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:47,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:47,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:47,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:48,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,059] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,059] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,060] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,060] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,060] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,060] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,060] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,079] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,997] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,997] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:48,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,003] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,003] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,004] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,004] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,004] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,004] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,004] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-02-28 19:46:49,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:49,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:49,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_metrics [2026-02-28 19:46:49,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 46_R1_001.fastq.gz [2026-02-28 19:46:49,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 46_R2_001.fastq.gz [2026-02-28 19:46:50,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:50,091] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-02-28 19:46:52,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-02-28 19:46:52,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-02-28 19:46:52,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-02-28 19:46:52,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-02-28 19:46:52,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-02-28 19:46:52,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:52,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:52,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:52,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:52,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:52,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M46_hist.pdf [2026-02-28 19:46:52,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:52,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,692] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,697] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:53,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-02-28 19:46:54,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:54,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:54,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_metrics [2026-02-28 19:46:54,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 44_R1_001.fastq.gz [2026-02-28 19:46:54,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 44_R2_001.fastq.gz [2026-02-28 19:46:54,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,726] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,732] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:54,733] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-02-28 19:46:57,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-02-28 19:46:57,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-02-28 19:46:57,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-02-28 19:46:57,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-02-28 19:46:57,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-02-28 19:46:57,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M44_hist.pdf [2026-02-28 19:46:57,467] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:57,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:57,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:57,469] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:57,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:57,620] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,625] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,625] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,630] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:57,649] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,597] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:58,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-02-28 19:46:59,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:59,517] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:59,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_metrics [2026-02-28 19:46:59,562] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 57_R2_001.fastq.gz [2026-02-28 19:46:59,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 57_R1_001.fastq.gz [2026-02-28 19:46:59,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,713] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:46:59,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-02-28 19:47:02,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-02-28 19:47:02,444] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-02-28 19:47:02,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-02-28 19:47:02,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-02-28 19:47:02,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-02-28 19:47:02,466] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:02,468] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:02,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:02,469] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:02,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:02,555] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M57_hist.pdf [2026-02-28 19:47:02,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:02,635] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,573] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,579] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:03,598] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-02-28 19:47:04,497] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:04,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:04,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_metrics [2026-02-28 19:47:04,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 55_R1_001.fastq.gz [2026-02-28 19:47:04,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 55_R2_001.fastq.gz [2026-02-28 19:47:04,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:04,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-02-28 19:47:07,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-02-28 19:47:07,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-02-28 19:47:07,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-02-28 19:47:07,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-02-28 19:47:07,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-02-28 19:47:07,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:07,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:07,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:07,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:07,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:07,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M55_hist.pdf [2026-02-28 19:47:07,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:07,393] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,357] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:08,376] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-02-28 19:47:09,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:09,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:09,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_metrics [2026-02-28 19:47:09,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 41_R2_001.fastq.gz [2026-02-28 19:47:09,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 41_R1_001.fastq.gz [2026-02-28 19:47:09,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,385] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,394] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:09,394] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-02-28 19:47:12,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-02-28 19:47:12,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-02-28 19:47:12,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-02-28 19:47:12,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-02-28 19:47:12,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-02-28 19:47:12,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M41_hist.pdf [2026-02-28 19:47:12,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:12,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:12,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:12,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:12,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:12,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,401] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:12,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:13,385] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-02-28 19:47:14,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:14,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:14,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_metrics [2026-02-28 19:47:14,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 52_R1_001.fastq.gz [2026-02-28 19:47:14,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 52_R2_001.fastq.gz [2026-02-28 19:47:14,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:14,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-02-28 19:47:17,089] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-02-28 19:47:17,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-02-28 19:47:17,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-02-28 19:47:17,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-02-28 19:47:17,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-02-28 19:47:17,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:17,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:17,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:17,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:17,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:17,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M52_hist.pdf [2026-02-28 19:47:17,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:17,282] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,216] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,226] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:18,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-02-28 19:47:19,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:19,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:19,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_metrics [2026-02-28 19:47:19,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 50_R2_001.fastq.gz [2026-02-28 19:47:19,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 50_R1_001.fastq.gz [2026-02-28 19:47:19,316] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:19,329] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-02-28 19:47:21,977] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-02-28 19:47:21,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-02-28 19:47:21,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-02-28 19:47:21,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-02-28 19:47:21,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-02-28 19:47:22,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M50_hist.pdf [2026-02-28 19:47:22,009] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:22,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:22,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:22,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:22,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:22,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,139] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,144] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:22,162] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,079] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:23,099] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-02-28 19:47:24,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:24,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:24,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_metrics [2026-02-28 19:47:24,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 61_R2_001.fastq.gz [2026-02-28 19:47:24,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 61_R1_001.fastq.gz [2026-02-28 19:47:24,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:24,197] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-02-28 19:47:27,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-02-28 19:47:27,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-02-28 19:47:27,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-02-28 19:47:27,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-02-28 19:47:27,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-02-28 19:47:27,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M61_hist.pdf [2026-02-28 19:47:27,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:27,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:27,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:27,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:27,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:27,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,224] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,225] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:27,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,186] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,192] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:28,212] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-02-28 19:47:29,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:29,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:29,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_metrics [2026-02-28 19:47:29,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 36_R2_001.fastq.gz [2026-02-28 19:47:29,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 36_R1_001.fastq.gz [2026-02-28 19:47:29,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,267] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,271] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:29,272] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-02-28 19:47:32,308] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-02-28 19:47:32,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-02-28 19:47:32,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-02-28 19:47:32,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-02-28 19:47:32,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-02-28 19:47:32,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M36_hist.pdf [2026-02-28 19:47:32,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:32,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:32,339] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:32,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:32,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:32,474] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,479] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:32,505] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,436] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,441] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,446] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:33,466] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-02-28 19:47:34,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:34,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:34,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_metrics [2026-02-28 19:47:34,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 34_R1_001.fastq.gz [2026-02-28 19:47:34,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 34_R2_001.fastq.gz [2026-02-28 19:47:34,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:34,528] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-02-28 19:47:37,461] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-02-28 19:47:37,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-02-28 19:47:37,465] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-02-28 19:47:37,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-02-28 19:47:37,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-02-28 19:47:37,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M34_hist.pdf [2026-02-28 19:47:37,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:37,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:37,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:37,495] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:37,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:37,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,644] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,649] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,649] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,649] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,649] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,649] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:37,668] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:38,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-02-28 19:47:39,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:39,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:39,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_metrics [2026-02-28 19:47:39,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 47_R2_001.fastq.gz [2026-02-28 19:47:39,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 47_R1_001.fastq.gz [2026-02-28 19:47:39,708] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:39,718] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-02-28 19:47:42,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-02-28 19:47:42,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-02-28 19:47:42,438] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-02-28 19:47:42,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-02-28 19:47:42,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-02-28 19:47:42,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:42,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:42,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:42,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:42,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:42,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M47_hist.pdf [2026-02-28 19:47:42,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,589] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,590] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,594] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,594] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,594] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,594] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:42,614] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,540] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:43,571] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-02-28 19:47:44,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:44,496] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:44,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_metrics [2026-02-28 19:47:44,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 45_R1_001.fastq.gz [2026-02-28 19:47:44,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 45_R2_001.fastq.gz [2026-02-28 19:47:44,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:44,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-02-28 19:47:47,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-02-28 19:47:47,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-02-28 19:47:47,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-02-28 19:47:47,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-02-28 19:47:47,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-02-28 19:47:47,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M45_hist.pdf [2026-02-28 19:47:47,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:47,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:47,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:47,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:47,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:47,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,700] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:47,720] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:48,723] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-02-28 19:47:49,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:49,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:49,644] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_metrics [2026-02-28 19:47:49,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 58_R2_001.fastq.gz [2026-02-28 19:47:49,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 58_R1_001.fastq.gz [2026-02-28 19:47:49,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,790] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,797] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:49,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-02-28 19:47:52,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-02-28 19:47:52,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-02-28 19:47:52,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-02-28 19:47:52,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-02-28 19:47:52,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-02-28 19:47:52,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M58_hist.pdf [2026-02-28 19:47:52,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:52,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:52,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:52,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:52,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:52,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,749] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:52,768] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,713] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:53,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-02-28 19:47:54,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:54,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:54,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_metrics [2026-02-28 19:47:54,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R2_001.fastq.gz [2026-02-28 19:47:54,710] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R1_001.fastq.gz [2026-02-28 19:47:54,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,838] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,839] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:54,839] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-02-28 19:47:57,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-02-28 19:47:57,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-02-28 19:47:57,541] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-02-28 19:47:57,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-02-28 19:47:57,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-02-28 19:47:57,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:57,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:57,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:57,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:57,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:57,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M31_hist.pdf [2026-02-28 19:47:57,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,709] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,715] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,716] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:57,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,701] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:58,721] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-02-28 19:47:59,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:59,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:59,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_metrics [2026-02-28 19:47:59,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-28 19:47:59,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-28 19:47:59,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-02-28 19:47:59,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-28 19:47:59,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-28 19:47:59,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-02-28 19:47:59,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-02-28 19:47:59,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-02-28 19:47:59,791] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-02-28 19:47:59,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-02-28 19:47:59,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-02-28 19:47:59,817] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-02-28 19:47:59,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-02-28 19:47:59,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M50.o3435215 [2026-02-28 19:47:59,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M50.o3435215 [2026-02-28 19:47:59,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M50.o3435215 [2026-02-28 19:47:59,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M52.o3435217 [2026-02-28 19:47:59,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M52.o3435217 [2026-02-28 19:47:59,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M52.o3435217 [2026-02-28 19:47:59,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M53.o3435218 [2026-02-28 19:47:59,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M53.o3435218 [2026-02-28 19:47:59,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M53.o3435218 [2026-02-28 19:47:59,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M44.o3435209 [2026-02-28 19:47:59,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M44.o3435209 [2026-02-28 19:47:59,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M44.o3435209 [2026-02-28 19:47:59,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M57.o3435223 [2026-02-28 19:47:59,916] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M57.o3435223 [2026-02-28 19:47:59,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M57.o3435223 [2026-02-28 19:47:59,934] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M55.o3435220 [2026-02-28 19:47:59,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M55.o3435220 [2026-02-28 19:47:59,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M55.o3435220 [2026-02-28 19:47:59,965] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M56.o3435221 [2026-02-28 19:47:59,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M56.o3435221 [2026-02-28 19:47:59,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M56.o3435221 [2026-02-28 19:48:00,006] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M33.o3435198 [2026-02-28 19:48:00,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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[2026-02-28 19:48:20,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-02-28 19:48:20,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-02-28 19:48:20,011] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-02-28 19:48:20,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-02-28 19:48:20,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-02-28 19:48:20,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-02-28 19:48:20,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-02-28 19:48:20,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-02-28 19:48:20,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-02-28 19:48:20,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-02-28 19:48:20,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-02-28 19:48:20,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-02-28 19:48:20,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-02-28 19:48:20,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-02-28 19:48:20,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-02-28 19:48:20,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-02-28 19:48:20,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-02-28 19:48:20,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-02-28 19:48:20,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-02-28 19:48:20,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-02-28 19:48:20,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-02-28 19:48:20,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-02-28 19:48:20,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-02-28 19:48:20,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-02-28 19:48:20,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-02-28 19:48:20,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-02-28 19:48:20,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-02-28 19:48:20,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-02-28 19:48:20,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-28 19:48:20,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-28 19:48:20,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-28 19:48:20,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-28 19:48:20,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-02-28 19:48:21,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-28 19:48:21,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-28 19:48:21,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-28 19:48:21,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-28 19:48:21,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-02-28 19:48:23,900] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-02-28 19:48:23,912] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-02-28 19:48:23,916] multiqc [DEBUG ] No samples found: custom_content [2026-02-28 19:48:23,938] multiqc [DEBUG ] No samples found: ccs [2026-02-28 19:48:23,962] multiqc [DEBUG ] No samples found: ngsderive [2026-02-28 19:48:23,983] multiqc [DEBUG ] No samples found: purple [2026-02-28 19:48:23,993] multiqc [DEBUG ] No samples found: conpair [2026-02-28 19:48:24,013] multiqc [DEBUG ] No samples found: lima [2026-02-28 19:48:24,030] multiqc [DEBUG ] No samples found: peddy [2026-02-28 19:48:24,046] multiqc [DEBUG ] No samples found: somalier [2026-02-28 19:48:24,071] multiqc [DEBUG ] No samples found: methylQA [2026-02-28 19:48:24,108] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-02-28 19:48:24,108] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-02-28 19:48:24,108] multiqc [DEBUG ] No samples found: mosdepth [2026-02-28 19:48:24,118] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-02-28 19:48:24,137] multiqc [DEBUG ] No samples found: qualimap [2026-02-28 19:48:24,164] multiqc [DEBUG ] No samples found: preseq [2026-02-28 19:48:24,184] multiqc [DEBUG ] No samples found: quast [2026-02-28 19:48:24,208] multiqc [DEBUG ] No samples found: qorts [2026-02-28 19:48:24,238] multiqc [DEBUG ] No samples found: rna_seqc [2026-02-28 19:48:24,257] multiqc [DEBUG ] No samples found: rockhopper [2026-02-28 19:48:24,276] multiqc [DEBUG ] No samples found: rsem [2026-02-28 19:48:24,353] multiqc.modules.rseqc.rseqc [INFO ] Found 32 infer_experiment reports [2026-02-28 19:48:24,374] multiqc [DEBUG ] No samples found: busco [2026-02-28 19:48:24,393] multiqc [DEBUG ] No samples found: bustools [2026-02-28 19:48:24,409] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-02-28 19:48:24,432] multiqc [DEBUG ] No samples found: gffcompare [2026-02-28 19:48:24,442] multiqc [DEBUG ] No samples found: disambiguate [2026-02-28 19:48:24,466] multiqc [DEBUG ] No samples found: supernova [2026-02-28 19:48:24,554] multiqc [DEBUG ] No samples found: deeptools [2026-02-28 19:48:24,580] multiqc [DEBUG ] No samples found: sargasso [2026-02-28 19:48:24,603] multiqc [DEBUG ] No samples found: verifybamid [2026-02-28 19:48:24,632] multiqc [DEBUG ] No samples found: mirtrace [2026-02-28 19:48:24,664] multiqc [DEBUG ] No samples found: happy [2026-02-28 19:48:24,700] multiqc [DEBUG ] No samples found: mirtop [2026-02-28 19:48:24,724] multiqc [DEBUG ] No samples found: sambamba [2026-02-28 19:48:24,758] multiqc [DEBUG ] No samples found: homer [2026-02-28 19:48:24,774] multiqc [DEBUG ] No samples found: hops [2026-02-28 19:48:24,808] multiqc [DEBUG ] No samples found: macs2 [2026-02-28 19:48:24,819] multiqc [DEBUG ] No samples found: theta2 [2026-02-28 19:48:24,838] multiqc [DEBUG ] No samples found: snpeff [2026-02-28 19:48:24,891] multiqc [DEBUG ] No samples found: gatk [2026-02-28 19:48:24,903] multiqc [DEBUG ] No samples found: htseq [2026-02-28 19:48:24,931] multiqc [DEBUG ] No samples found: bcftools [2026-02-28 19:48:24,956] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M42_sorted [2026-02-28 19:48:24,959] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M40_sorted [2026-02-28 19:48:24,962] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M53_sorted [2026-02-28 19:48:24,966] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M51_sorted [2026-02-28 19:48:24,969] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M39_sorted [2026-02-28 19:48:24,972] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M37_sorted [2026-02-28 19:48:24,975] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M48_sorted [2026-02-28 19:48:24,978] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M59_sorted [2026-02-28 19:48:24,981] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M32_sorted [2026-02-28 19:48:24,983] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M43_sorted [2026-02-28 19:48:24,986] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M56_sorted [2026-02-28 19:48:24,988] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M54_sorted [2026-02-28 19:48:24,990] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M62_sorted [2026-02-28 19:48:24,993] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M60_sorted [2026-02-28 19:48:24,995] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M38_sorted [2026-02-28 19:48:24,997] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M49_sorted [2026-02-28 19:48:24,998] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M35_sorted [2026-02-28 19:48:25,000] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M33_sorted [2026-02-28 19:48:25,002] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M46_sorted [2026-02-28 19:48:25,004] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M44_sorted [2026-02-28 19:48:25,006] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M57_sorted [2026-02-28 19:48:25,008] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M55_sorted [2026-02-28 19:48:25,010] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M41_sorted [2026-02-28 19:48:25,011] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M52_sorted [2026-02-28 19:48:25,013] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M50_sorted [2026-02-28 19:48:25,014] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M61_sorted [2026-02-28 19:48:25,015] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M36_sorted [2026-02-28 19:48:25,016] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M34_sorted [2026-02-28 19:48:25,016] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M47_sorted [2026-02-28 19:48:25,017] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M45_sorted [2026-02-28 19:48:25,018] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M58_sorted [2026-02-28 19:48:25,019] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M31_sorted [2026-02-28 19:48:25,019] multiqc.modules.featureCounts.feature_counts [INFO ] Found 32 reports [2026-02-28 19:48:25,060] multiqc [DEBUG ] No samples found: fgbio [2026-02-28 19:48:25,156] multiqc [DEBUG ] No samples found: dragen [2026-02-28 19:48:25,184] multiqc [DEBUG ] No samples found: dedup [2026-02-28 19:48:25,208] multiqc [DEBUG ] No samples found: damageprofiler [2026-02-28 19:48:25,392] multiqc [DEBUG ] No samples found: biobambam2 [2026-02-28 19:48:25,414] multiqc [DEBUG ] No samples found: jcvi [2026-02-28 19:48:25,423] multiqc [DEBUG ] No samples found: mtnucratio [2026-02-28 19:48:27,516] multiqc.modules.picard.picard [INFO ] Found 32 InsertSizeMetrics reports [2026-02-28 19:48:27,543] multiqc.modules.picard.picard [INFO ] Found 32 MarkDuplicates reports [2026-02-28 19:48:27,634] multiqc.modules.picard.picard [INFO ] Found 32 RnaSeqMetrics reports [2026-02-28 19:48:27,655] multiqc [DEBUG ] No samples found: vep [2026-02-28 19:48:27,680] multiqc [DEBUG ] No samples found: sentieon [2026-02-28 19:48:27,696] multiqc [DEBUG ] No samples found: prokka [2026-02-28 19:48:27,725] multiqc [DEBUG ] No samples found: qc3C [2026-02-28 19:48:27,748] multiqc [DEBUG ] No samples found: nanostat [2026-02-28 19:48:27,759] multiqc [DEBUG ] No samples found: samblaster [2026-02-28 19:48:27,878] multiqc.modules.samtools.samtools [INFO ] Found 96 flagstat reports [2026-02-28 19:48:27,896] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-02-28 19:48:27,905] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-02-28 19:48:27,916] multiqc [DEBUG ] No samples found: bamtools [2026-02-28 19:48:27,924] multiqc [DEBUG ] No samples found: jellyfish [2026-02-28 19:48:27,935] multiqc [DEBUG ] No samples found: vcftools [2026-02-28 19:48:27,954] multiqc [DEBUG ] No samples found: longranger [2026-02-28 19:48:27,976] multiqc [DEBUG ] No samples found: stacks [2026-02-28 19:48:28,004] multiqc [DEBUG ] No samples found: varscan2 [2026-02-28 19:48:28,024] multiqc [DEBUG ] No samples found: snippy [2026-02-28 19:48:28,074] multiqc [DEBUG ] No samples found: bbmap [2026-02-28 19:48:28,094] multiqc [DEBUG ] No samples found: bismark [2026-02-28 19:48:28,115] multiqc [DEBUG ] No samples found: biscuit [2026-02-28 19:48:28,138] multiqc [DEBUG ] No samples found: hicexplorer [2026-02-28 19:48:28,159] multiqc [DEBUG ] No samples found: hicup [2026-02-28 19:48:28,194] multiqc [DEBUG ] No samples found: hicpro [2026-02-28 19:48:28,205] multiqc [DEBUG ] No samples found: salmon [2026-02-28 19:48:28,230] multiqc [DEBUG ] No samples found: kallisto [2026-02-28 19:48:28,249] multiqc [DEBUG ] No samples found: slamdunk [2026-02-28 19:48:31,651] multiqc.modules.star.star [INFO ] Found 32 reports and 32 gene count files [2026-02-28 19:48:31,673] multiqc [DEBUG ] No samples found: hisat2 [2026-02-28 19:48:31,686] multiqc [DEBUG ] No samples found: tophat [2026-02-28 19:48:31,703] multiqc [DEBUG ] No samples found: bowtie2 [2026-02-28 19:48:31,723] multiqc [DEBUG ] No samples found: bowtie1 [2026-02-28 19:48:31,748] multiqc [DEBUG ] No samples found: snpsplit [2026-02-28 19:48:31,770] multiqc [DEBUG ] No samples found: odgi [2026-02-28 19:48:31,794] multiqc [DEBUG ] No samples found: pangolin [2026-02-28 19:48:31,805] multiqc [DEBUG ] No samples found: kat [2026-02-28 19:48:31,814] multiqc [DEBUG ] No samples found: leehom [2026-02-28 19:48:31,833] multiqc [DEBUG ] No samples found: adapterRemoval [2026-02-28 19:48:31,844] multiqc [DEBUG ] No samples found: clipandmerge [2026-02-28 19:48:31,871] multiqc [DEBUG ] No samples found: cutadapt [2026-02-28 19:48:31,881] multiqc [DEBUG ] No samples found: flexbar [2026-02-28 19:48:31,898] multiqc [DEBUG ] No samples found: kaiju [2026-02-28 19:48:31,914] multiqc [DEBUG ] No samples found: kraken [2026-02-28 19:48:31,939] multiqc [DEBUG ] No samples found: malt [2026-02-28 19:48:31,959] multiqc [DEBUG ] No samples found: trimmomatic [2026-02-28 19:48:31,989] multiqc [DEBUG ] No samples found: sickle [2026-02-28 19:48:32,007] multiqc [DEBUG ] No samples found: skewer [2026-02-28 19:48:32,017] multiqc [DEBUG ] No samples found: sortmerna [2026-02-28 19:48:32,025] multiqc [DEBUG ] No samples found: biobloomtools [2026-02-28 19:48:32,045] multiqc [DEBUG ] No samples found: fastq_screen [2026-02-28 19:48:32,073] multiqc [DEBUG ] No samples found: afterqc [2026-02-28 19:48:32,119] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,141] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,173] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,210] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,232] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,260] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,284] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,298] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,323] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,346] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,368] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,389] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,414] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,437] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,458] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,487] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,508] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,528] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,547] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,568] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,578] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,604] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,632] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,657] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,677] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,700] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,715] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,740] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,757] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,771] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,789] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,811] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-02-28 19:48:32,812] multiqc.modules.fastp.fastp [INFO ] Found 32 reports [2026-02-28 19:48:46,796] multiqc.modules.fastqc.fastqc [INFO ] Found 64 reports [2026-02-28 19:48:46,798] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-02-28 19:48:51,295] multiqc [DEBUG ] No samples found: pychopper [2026-02-28 19:48:51,321] multiqc [DEBUG ] No samples found: pycoqc [2026-02-28 19:48:51,341] multiqc [DEBUG ] No samples found: minionqc [2026-02-28 19:48:51,369] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-02-28 19:48:51,403] multiqc [DEBUG ] No samples found: clusterflow [2026-02-28 19:48:51,426] multiqc [DEBUG ] No samples found: bcl2fastq [2026-02-28 19:48:51,463] multiqc [DEBUG ] No samples found: bclconvert [2026-02-28 19:48:51,490] multiqc [DEBUG ] No samples found: interop [2026-02-28 19:48:51,514] multiqc [DEBUG ] No samples found: ivar [2026-02-28 19:48:51,539] multiqc [DEBUG ] No samples found: flash [2026-02-28 19:48:51,563] multiqc [DEBUG ] No samples found: seqyclean [2026-02-28 19:48:51,574] multiqc [DEBUG ] No samples found: optitype [2026-02-28 19:48:51,742] multiqc [INFO ] Compressing plot data [2026-02-28 19:48:54,983] multiqc [INFO ] Report : multiqc_report.html [2026-02-28 19:48:54,983] multiqc [INFO ] Data : multiqc_data [2026-02-28 19:48:54,983] multiqc [DEBUG ] Moving data file from '/scratch/tmptux75oka/multiqc_data' to '/projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/G253_RNASEQ_DevinKenney_multiqc_report/multiqc_data' [2026-02-28 19:48:55,647] multiqc [INFO ] MultiQC complete [2026-02-28 19:48:55,648] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers