Sample fastp_mqc-generalstats-fastp-pct_duplication fastp_mqc-generalstats-fastp-after_filtering_q30_rate fastp_mqc-generalstats-fastp-after_filtering_q30_bases fastp_mqc-generalstats-fastp-after_filtering_gc_content fastp_mqc-generalstats-fastp-pct_surviving fastp_mqc-generalstats-fastp-pct_adapter FastQC_mqc-generalstats-fastqc-percent_duplicates FastQC_mqc-generalstats-fastqc-percent_gc FastQC_mqc-generalstats-fastqc-avg_sequence_length FastQC_mqc-generalstats-fastqc-percent_fails FastQC_mqc-generalstats-fastqc-total_sequences STAR_mqc-generalstats-star-uniquely_mapped_percent STAR_mqc-generalstats-star-uniquely_mapped Picard_mqc-generalstats-picard-PCT_RIBOSOMAL_BASES Picard_mqc-generalstats-picard-PCT_MRNA_BASES Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean Picard_mqc-generalstats-picard-PERCENT_DUPLICATION featureCounts_mqc-generalstats-featurecounts-percent_assigned featureCounts_mqc-generalstats-featurecounts-Assigned Samtools_mqc-generalstats-samtools-flagstat_total Samtools_mqc-generalstats-samtools-mapped_passed 31_R1_001 18.6043 0.924822 5202570136.0 0.503676 98.19067757482931 8.191476067943247 53.5924 50.0 150.0 27.27272727272727 19373993.0 31_R2_001 52.3075 51.0 150.0 27.27272727272727 19373993.0 32_R1_001 16.6759 0.919133 5813410691.0 0.508595 97.94772957437586 9.181040064703906 54.0284 51.0 150.0 27.27272727272727 21860813.0 32_R2_001 52.3493 51.0 150.0 27.27272727272727 21860813.0 33_R1_001 17.1793 0.917532 5889372433.0 0.505415 97.72724034838022 9.554335411750445 52.9464 50.0 150.0 27.27272727272727 22250747.0 33_R2_001 51.4158 51.0 150.0 27.27272727272727 22250747.0 34_R1_001 17.9758 0.914863 6265643102.0 0.507669 97.65263733899656 8.675294815209382 55.8758 50.0 150.0 27.27272727272727 23729695.0 34_R2_001 53.9998 51.0 150.0 27.27272727272727 23729695.0 35_R1_001 16.6104 0.913187 6069808238.0 0.505327 97.70022035005333 7.398973730680638 53.4282 50.0 150.0 27.27272727272727 22977984.0 35_R2_001 51.1211 51.0 150.0 27.27272727272727 22977984.0 36_R1_001 17.0143 0.91526 7087661635.0 0.509335 97.65285691756233 9.119469540433805 55.3118 51.0 150.0 27.27272727272727 26847362.0 36_R2_001 53.5557 51.0 150.0 27.27272727272727 26847362.0 37_R1_001 17.995 0.924645 6464289534.0 0.505709 98.23563367594633 8.608790608087642 53.126 50.0 150.0 27.27272727272727 24077993.0 37_R2_001 51.7578 51.0 150.0 27.27272727272727 24077993.0 38_R1_001 17.907500000000002 0.91592 5652517496.0 0.504563 97.7861415222421 8.165865518674785 57.1236 50.0 150.0 27.27272727272727 21338130.0 38_R2_001 55.3401 51.0 150.0 27.27272727272727 21338130.0 39_R1_001 18.4817 0.923086 5327487175.0 0.505605 98.21735636737263 8.52235747290834 55.2653 50.0 150.0 27.27272727272727 19881764.0 39_R2_001 53.6778 51.0 150.0 27.27272727272727 19881764.0 40_R1_001 17.5059 0.919253 5460555381.0 0.516256 97.84029524065457 10.360383311298204 57.334 51.0 150.0 27.27272727272727 20608002.0 40_R2_001 55.3285 52.0 150.0 27.27272727272727 20608002.0 41_R1_001 17.5952 0.914882 6142770492.0 0.507195 97.64548256772122 7.9605104990161575 55.1434 50.0 150.0 27.27272727272727 23238987.0 41_R2_001 53.2516 51.0 150.0 27.27272727272727 23238987.0 42_R1_001 19.314 0.91598 7096759714.0 0.504647 97.76023665266436 8.734719050477576 59.7818 50.0 150.0 27.27272727272727 26815333.0 42_R2_001 57.5936 51.0 150.0 27.27272727272727 26815333.0 43_R1_001 16.8945 0.916139 4311906577.0 0.501635 97.36236190508893 6.551369130142325 50.5996 50.0 150.0 27.27272727272727 16308530.0 43_R2_001 48.6398 51.0 150.0 27.27272727272727 16308530.0 44_R1_001 18.6311 0.922011 5180984154.0 0.506219 97.53497214448409 7.742949415241942 55.6076 50.0 150.0 27.27272727272727 19468137.0 44_R2_001 53.9543 51.0 150.0 36.36363636363637 19468137.0 45_R1_001 18.4035 0.930246 5003693896.0 0.503982 98.14145295568497 7.179870924822282 53.5269 50.0 150.0 27.27272727272727 18507199.0 45_R2_001 52.1406 51.0 150.0 36.36363636363637 18507199.0 46_R1_001 19.782700000000002 0.926812 4733103838.0 0.511294 97.7876751824016 8.578161750439603 57.8797 51.0 150.0 27.27272727272727 17668156.0 46_R2_001 56.1138 51.0 150.0 36.36363636363637 17668156.0 47_R1_001 19.0641 0.931905 5316378840.0 0.505791 98.16432924702715 8.395215034619309 55.317 50.0 150.0 27.27272727272727 19655649.0 47_R2_001 54.1741 51.0 150.0 27.27272727272727 19655649.0 48_R1_001 17.9413 0.92324 5173969130.0 0.504053 97.74614676164752 7.161416324331639 56.2269 50.0 150.0 27.27272727272727 19359690.0 48_R2_001 54.2224 51.0 150.0 36.36363636363637 19359690.0 49_R1_001 17.0197 0.922168 5063407055.0 0.507378 97.47784400733764 7.857229849822575 53.7164 50.0 150.0 27.27272727272727 19041011.0 49_R2_001 52.001 51.0 150.0 36.36363636363637 19041011.0 50_R1_001 16.4081 0.911003 4432853038.0 0.503434 97.03875199002884 6.33477599716501 51.343 50.0 150.0 27.27272727272727 16925634.0 50_R2_001 49.3387 51.0 150.0 27.27272727272727 16925634.0 51_R1_001 16.301299999999998 0.910827 5254650589.0 0.50667 97.49571751864585 7.228423113412119 53.7999 50.0 150.0 27.27272727272727 19979655.0 51_R2_001 51.9624 51.0 150.0 27.27272727272727 19979655.0 52_R1_001 16.743199999999998 0.914802 5672599354.0 0.502018 97.55564296325866 9.284133699219128 55.4068 50.0 150.0 27.27272727272727 21523656.0 52_R2_001 53.8465 50.0 150.0 27.27272727272727 21523656.0 53_R1_001 18.0856 0.924691 5626968482.0 0.501686 98.25680144789344 8.164641282681899 55.4412 50.0 150.0 27.27272727272727 20938005.0 53_R2_001 54.2225 50.0 150.0 27.27272727272727 20938005.0 54_R1_001 35.221599999999995 0.927937 6310018155.0 0.490568 98.19880057490748 12.835570039156547 79.003 49.0 150.0 36.36363636363637 23571793.0 54_R2_001 77.9594 49.0 150.0 36.36363636363637 23571793.0 55_R1_001 17.4827 0.92221 4729229398.0 0.498511 98.05939059880647 8.180855641989293 52.4798 50.0 150.0 27.27272727272727 17688052.0 55_R2_001 51.4184 50.0 150.0 27.27272727272727 17688052.0 56_R1_001 15.8976 0.913228 5832467232.0 0.503708 97.60808375695802 8.324119518020822 52.4974 50.0 150.0 27.27272727272727 22136143.0 56_R2_001 50.9761 51.0 150.0 27.27272727272727 22136143.0 57_R1_001 16.344 0.90991 5857405019.0 0.506145 97.24103494466331 7.260111381415174 53.2181 50.0 150.0 27.27272727272727 22357949.0 57_R2_001 51.7888 51.0 150.0 36.36363636363637 22357949.0 58_R1_001 15.601499999999998 0.912203 5370072209.0 0.506891 97.39406727685875 8.83167962071356 51.3296 50.0 150.0 27.27272727272727 20462846.0 58_R2_001 50.1631 51.0 150.0 36.36363636363637 20462846.0 59_R1_001 15.423300000000001 0.910199 6008202966.0 0.508177 97.6055731055927 9.02426679390668 52.801 51.0 150.0 27.27272727272727 22900553.0 59_R2_001 50.8927 51.0 150.0 27.27272727272727 22900553.0 60_R1_001 16.497500000000002 0.91008 5613800497.0 0.509142 97.54920404732438 7.852405241350486 53.8111 51.0 150.0 27.27272727272727 21371057.0 60_R2_001 51.8622 51.0 150.0 27.27272727272727 21371057.0 61_R1_001 16.3279 0.919826 5897418224.0 0.504958 98.14487833297659 9.404980047248918 51.2643 50.0 150.0 27.27272727272727 22130031.0 61_R2_001 49.746 51.0 150.0 18.181818181818183 22130031.0 62_R1_001 15.7112 0.905714 6421877801.0 0.504203 97.39147764730377 7.048575293297908 53.6959 50.0 150.0 27.27272727272727 24571689.0 62_R2_001 51.6438 51.0 150.0 36.36363636363637 24571689.0 G253_M31_G253_M31 88.72 17187939.0 G253_M31_primary_unique 2.2325999999999997 88.3702 511 1192.692209 0.406325 G253_M31_sorted 96.01575849204491 16503130 G253_M31_statistics_for_all_accepted_reads 37794786 37794786 G253_M31_statistics_for_primary_reads 35803950 35803950 G253_M31_statistics_for_primary_unique_reads 34375878 34375878 G253_M32_G253_M32 88.69 19388360.0 G253_M32_primary_unique 1.5771 89.5035 532 1269.405715 0.391892 G253_M32_sorted 96.24122411591284 18659595 G253_M32_statistics_for_all_accepted_reads 42421940 42421940 G253_M32_statistics_for_primary_reads 40297692 40297692 G253_M32_statistics_for_primary_unique_reads 38776720 38776720 G253_M33_G253_M33 88.49 19689235.0 G253_M33_primary_unique 1.4237 87.6043 502 1152.804126 0.405759 G253_M33_sorted 95.64098351205621 18830978 G253_M33_statistics_for_all_accepted_reads 42791766 42791766 G253_M33_statistics_for_primary_reads 40793812 40793812 G253_M33_statistics_for_primary_unique_reads 39378470 39378470 G253_M34_G253_M34 88.79 21070377.0 G253_M34_primary_unique 1.5663 89.8968 586 1393.314679 0.433937 G253_M34_sorted 96.60175990206535 20354355 G253_M34_statistics_for_all_accepted_reads 45693352 45693352 G253_M34_statistics_for_primary_reads 43615410 43615410 G253_M34_statistics_for_primary_unique_reads 42140754 42140754 G253_M35_G253_M35 88.89 20426036.0 G253_M35_primary_unique 1.9192 88.0531 551 1297.148429 0.408243 G253_M35_sorted 95.90738996053861 19590078 G253_M35_statistics_for_all_accepted_reads 44328304 44328304 G253_M35_statistics_for_primary_reads 42319852 42319852 G253_M35_statistics_for_primary_unique_reads 40852072 40852072 G253_M36_G253_M36 88.6 23788091.0 G253_M36_primary_unique 1.7404 89.3854 541 1277.732112 0.413795 G253_M36_sorted 96.64158843179135 22989189 G253_M36_statistics_for_all_accepted_reads 51240576 51240576 G253_M36_statistics_for_primary_reads 49104002 49104002 G253_M36_statistics_for_primary_unique_reads 47576182 47576182 G253_M37_G253_M37 89.59 21570856.0 G253_M37_primary_unique 1.4042000000000001 85.0917 495 1123.078519 0.411606 G253_M37_sorted 93.99823539687067 20276224 G253_M37_statistics_for_all_accepted_reads 46653686 46653686 G253_M37_statistics_for_primary_reads 44565692 44565692 G253_M37_statistics_for_primary_unique_reads 43141712 43141712 G253_M38_G253_M38 87.66 18704680.0 G253_M38_primary_unique 3.2601 86.9995 468 1002.132178 0.437412 G253_M38_sorted 95.75039508828806 17909805 G253_M38_statistics_for_all_accepted_reads 41252952 41252952 G253_M38_statistics_for_primary_reads 39041284 39041284 G253_M38_statistics_for_primary_unique_reads 37409360 37409360 G253_M39_G253_M39 88.9 17674735.0 G253_M39_primary_unique 2.2103 89.0822 537 1251.485143 0.416341 G253_M39_sorted 95.99341093374242 16966581 G253_M39_statistics_for_all_accepted_reads 38630598 38630598 G253_M39_statistics_for_primary_reads 36743660 36743660 G253_M39_statistics_for_primary_unique_reads 35349470 35349470 G253_M40_G253_M40 87.03 17934954.0 G253_M40_primary_unique 2.7616 89.4863 571 1348.735445 0.414829 G253_M40_sorted 96.21826741233906 17256702 G253_M40_statistics_for_all_accepted_reads 39628698 39628698 G253_M40_statistics_for_primary_reads 37410282 37410282 G253_M40_statistics_for_primary_unique_reads 35869908 35869908 G253_M41_G253_M41 88.78 20630705.0 G253_M41_primary_unique 1.8224 89.2429 563 1351.429058 0.422837 G253_M41_sorted 96.3640360326998 19880580 G253_M41_statistics_for_all_accepted_reads 44841670 44841670 G253_M41_statistics_for_primary_reads 42756018 42756018 G253_M41_statistics_for_primary_unique_reads 41261410 41261410 G253_M42_G253_M42 87.45 23450715.0 G253_M42_primary_unique 2.3979 87.9573 605 1437.326881 0.452127 G253_M42_sorted 94.82922375714344 22238131 G253_M42_statistics_for_all_accepted_reads 52211822 52211822 G253_M42_statistics_for_primary_reads 49159456 49159456 G253_M42_statistics_for_primary_unique_reads 46901430 46901430 G253_M43_G253_M43 88.38 14412921.0 G253_M43_primary_unique 1.9729 88.3484 581 1378.610974 0.392792 G253_M43_sorted 95.76974022129171 13803217 G253_M43_statistics_for_all_accepted_reads 31393742 31393742 G253_M43_statistics_for_primary_reads 29916280 29916280 G253_M43_statistics_for_primary_unique_reads 28825842 28825842 G253_M44_G253_M44 86.79 16896370.0 G253_M44_primary_unique 2.8186 88.0003 592 1428.241599 0.406326 G253_M44_sorted 95.19493832107133 16084489 G253_M44_statistics_for_all_accepted_reads 37719620 37719620 G253_M44_statistics_for_primary_reads 35452010 35452010 G253_M44_statistics_for_primary_unique_reads 33792740 33792740 G253_M45_G253_M45 89.08 16486827.0 G253_M45_primary_unique 2.4098 87.7707 566 1355.006738 0.385593 G253_M45_sorted 96.11548662456396 15846394 G253_M45_statistics_for_all_accepted_reads 35893360 35893360 G253_M45_statistics_for_primary_reads 34204666 34204666 G253_M45_statistics_for_primary_unique_reads 32973654 32973654 G253_M46_G253_M46 87.53 15464774.0 G253_M46_primary_unique 2.3935 90.2156 648 1504.508956 0.423033 G253_M46_sorted 96.36878624931732 14903215 G253_M46_statistics_for_all_accepted_reads 34131242 34131242 G253_M46_statistics_for_primary_reads 32279096 32279096 G253_M46_statistics_for_primary_unique_reads 30929548 30929548 G253_M47_G253_M47 88.96 17485639.0 G253_M47_primary_unique 1.6925 89.8809 570 1340.251075 0.395443 G253_M47_sorted 96.55712896737717 16883631 G253_M47_statistics_for_all_accepted_reads 38198608 38198608 G253_M47_statistics_for_primary_reads 36323998 36323998 G253_M47_statistics_for_primary_unique_reads 34971278 34971278 G253_M48_G253_M48 87.43 16926215.0 G253_M48_primary_unique 2.3941 88.00670000000001 596 1383.933173 0.397814 G253_M48_sorted 95.57628211623212 16177447 G253_M48_statistics_for_all_accepted_reads 37752780 37752780 G253_M48_statistics_for_primary_reads 35508196 35508196 G253_M48_statistics_for_primary_unique_reads 33852430 33852430 G253_M49_G253_M49 88.5 16850661.0 G253_M49_primary_unique 1.3432 90.981 627 1490.488439 0.383496 G253_M49_sorted 97.02356483226386 16349112 G253_M49_statistics_for_all_accepted_reads 36451252 36451252 G253_M49_statistics_for_primary_reads 34853278 34853278 G253_M49_statistics_for_primary_unique_reads 33701322 33701322 G253_M50_G253_M50 88.06 14905444.0 G253_M50_primary_unique 2.0358 89.6607 631 1522.803526 0.396092 G253_M50_sorted 96.64737930651378 14405721 G253_M50_statistics_for_all_accepted_reads 32343254 32343254 G253_M50_statistics_for_primary_reads 30882332 30882332 G253_M50_statistics_for_primary_unique_reads 29810888 29810888 G253_M51_G253_M51 88.83 17747483.0 G253_M51_primary_unique 1.8952 89.5386 577 1350.030237 0.408864 G253_M51_sorted 96.39703275106672 17108047 G253_M51_statistics_for_all_accepted_reads 38385056 38385056 G253_M51_statistics_for_primary_reads 36718834 36718834 G253_M51_statistics_for_primary_unique_reads 35494966 35494966 G253_M52_G253_M52 87.57 18848863.0 G253_M52_primary_unique 1.6437 88.3601 472 1021.4769970000001 0.409725 G253_M52_sorted 95.3054356647401 17963991 G253_M52_statistics_for_all_accepted_reads 41509982 41509982 G253_M52_statistics_for_primary_reads 39330550 39330550 G253_M52_statistics_for_primary_unique_reads 37697726 37697726 G253_M53_G253_M53 88.43 18515454.0 G253_M53_primary_unique 1.9139 88.262 492 1116.227717 0.403112 G253_M53_sorted 95.26446934544516 17638649 G253_M53_statistics_for_all_accepted_reads 41279098 41279098 G253_M53_statistics_for_primary_reads 38834746 38834746 G253_M53_statistics_for_primary_unique_reads 37030908 37030908 G253_M54_G253_M54 80.08 18877315.0 G253_M54_primary_unique 5.0059 83.71600000000001 309 527.234844 0.787081 G253_M54_sorted 95.5380730787191 18035023 G253_M54_statistics_for_all_accepted_reads 48056032 48056032 G253_M54_statistics_for_primary_reads 41847216 41847216 G253_M54_statistics_for_primary_unique_reads 37754630 37754630 G253_M55_G253_M55 88.51 15655851.0 G253_M55_primary_unique 1.5625 86.8889 470 1011.262318 0.404954 G253_M55_sorted 94.59042501107095 14808936 G253_M55_statistics_for_all_accepted_reads 34616690 34616690 G253_M55_statistics_for_primary_reads 32726468 32726468 G253_M55_statistics_for_primary_unique_reads 31311702 31311702 G253_M56_G253_M56 88.56 19604852.0 G253_M56_primary_unique 1.2738 86.866 507 1140.618028 0.401802 G253_M56_sorted 94.70517298472846 18566809 G253_M56_statistics_for_all_accepted_reads 42493442 42493442 G253_M56_statistics_for_primary_reads 40572412 40572412 G253_M56_statistics_for_primary_unique_reads 39209704 39209704 G253_M57_G253_M57 88.52 19791871.0 G253_M57_primary_unique 1.4040000000000001 89.0954 545 1262.785945 0.413337 G253_M57_sorted 96.24220469100673 19048133 G253_M57_statistics_for_all_accepted_reads 43093348 43093348 G253_M57_statistics_for_primary_reads 41026494 41026494 G253_M57_statistics_for_primary_unique_reads 39583742 39583742 G253_M58_G253_M58 88.59 18127563.0 G253_M58_primary_unique 0.9733999999999999 88.7394 536 1231.425709 0.397724 G253_M58_sorted 95.92352816536895 17388598 G253_M58_statistics_for_all_accepted_reads 39106154 39106154 G253_M58_statistics_for_primary_reads 37429156 37429156 G253_M58_statistics_for_primary_unique_reads 36255126 36255126 G253_M59_G253_M59 88.2 20198530.0 G253_M59_primary_unique 1.1587999999999998 87.661 537 1251.532714 0.395289 G253_M59_sorted 95.03866370473494 19196413 G253_M59_statistics_for_all_accepted_reads 44062318 44062318 G253_M59_statistics_for_primary_reads 41881882 41881882 G253_M59_statistics_for_primary_unique_reads 40397060 40397060 G253_M60_G253_M60 88.26 18861172.0 G253_M60_primary_unique 2.0247 86.8232 575 1381.507095 0.426004 G253_M60_sorted 94.97983476318439 17914310 G253_M60_statistics_for_all_accepted_reads 41258366 41258366 G253_M60_statistics_for_primary_reads 39152050 39152050 G253_M60_statistics_for_primary_unique_reads 37722344 37722344 G253_M61_G253_M61 88.84 19661290.0 G253_M61_primary_unique 1.37 84.3239 479 1084.001142 0.393804 G253_M61_sorted 93.33770571513872 18351397 G253_M61_statistics_for_all_accepted_reads 42774836 42774836 G253_M61_statistics_for_primary_reads 40710366 40710366 G253_M61_statistics_for_primary_unique_reads 39322580 39322580 G253_M62_G253_M62 88.42 21726795.0 G253_M62_primary_unique 1.3325 87.878 513 1171.622027 0.414431 G253_M62_sorted 95.35540331650388 20717673 G253_M62_statistics_for_all_accepted_reads 47434434 47434434 G253_M62_statistics_for_primary_reads 45147580 45147580 G253_M62_statistics_for_primary_unique_reads 43453590 43453590