[2026-08-17 22:15:01,242] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-17 22:15:01,242] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-17 22:15:01,242] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-17 22:15:01,243] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-17 22:15:01,244] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-17 22:15:01,244] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-17 22:15:01,245] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-17 22:15:01,245] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/06_CollectMetrics/ [2026-08-17 22:15:01,607] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-17 22:15:01,607] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/06_CollectMetrics/ [2026-08-17 22:15:01,607] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/99_final_summary/G260_RNAseq_multiqc_report [2026-08-17 22:15:01,607] multiqc [DEBUG ] Template : default [2026-08-17 22:15:01,607] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-17 22:15:01,608] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-17 22:15:01,608] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp0zzh9ffj [2026-08-17 22:15:01,692] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/SAMPLES [2026-08-17 22:15:01,692] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/03_FASTQC [2026-08-17 22:15:01,692] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/06_CollectMetrics [2026-08-17 22:15:02,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M16-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:02,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M16-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:02,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,210] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:02,214] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M16_SJ.out.tab [2026-08-17 22:15:04,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M16_marked_dup_metrics.txt [2026-08-17 22:15:04,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M16_marked_dup_metrics.txt [2026-08-17 22:15:04,408] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M16_marked_dup_metrics.txt [2026-08-17 22:15:04,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M16_marked_dup_metrics.txt [2026-08-17 22:15:04,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M16_marked_dup_metrics.txt [2026-08-17 22:15:04,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M16_hist.pdf [2026-08-17 22:15:04,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:04,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:04,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:04,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:04,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:04,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,535] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:04,554] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,516] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,516] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,517] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,517] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:05,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M16_featureCounts.out [2026-08-17 22:15:06,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:06,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:06,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M16_metrics [2026-08-17 22:15:06,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M08-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:06,507] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M08-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:06,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,654] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,655] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:06,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M08_SJ.out.tab [2026-08-17 22:15:08,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M08_marked_dup_metrics.txt [2026-08-17 22:15:08,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M08_marked_dup_metrics.txt [2026-08-17 22:15:08,490] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M08_marked_dup_metrics.txt [2026-08-17 22:15:08,490] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M08_marked_dup_metrics.txt [2026-08-17 22:15:08,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M08_marked_dup_metrics.txt [2026-08-17 22:15:08,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:08,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:08,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:08,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:08,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:08,604] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M08_hist.pdf [2026-08-17 22:15:08,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,645] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:08,664] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,622] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,622] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,628] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:09,646] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M08_featureCounts.out [2026-08-17 22:15:10,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:10,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:10,574] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M08_metrics [2026-08-17 22:15:10,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M11-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:10,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M11-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:10,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:10,748] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M11_SJ.out.tab [2026-08-17 22:15:12,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M11_marked_dup_metrics.txt [2026-08-17 22:15:12,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M11_marked_dup_metrics.txt [2026-08-17 22:15:12,853] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M11_marked_dup_metrics.txt [2026-08-17 22:15:12,853] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M11_marked_dup_metrics.txt [2026-08-17 22:15:12,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M11_marked_dup_metrics.txt [2026-08-17 22:15:12,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M11_hist.pdf [2026-08-17 22:15:12,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:12,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:12,886] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:12,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:12,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:12,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,993] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:12,994] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,014] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,973] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,973] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,973] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,973] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,973] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:13,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M11_featureCounts.out [2026-08-17 22:15:14,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:14,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:14,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M11_metrics [2026-08-17 22:15:14,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M03-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:14,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M03-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:15,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,152] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,157] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,157] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,157] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,157] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,157] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,158] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,158] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,158] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:15,158] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M03_SJ.out.tab [2026-08-17 22:15:16,983] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M03_marked_dup_metrics.txt [2026-08-17 22:15:16,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M03_marked_dup_metrics.txt [2026-08-17 22:15:16,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M03_marked_dup_metrics.txt [2026-08-17 22:15:16,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M03_marked_dup_metrics.txt [2026-08-17 22:15:16,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M03_marked_dup_metrics.txt [2026-08-17 22:15:17,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:17,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:17,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:17,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:17,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:17,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M03_hist.pdf [2026-08-17 22:15:17,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,182] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,182] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,182] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,182] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,182] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,183] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,183] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:17,201] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,145] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,150] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,151] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:18,169] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M03_featureCounts.out [2026-08-17 22:15:19,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:19,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:19,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M03_metrics [2026-08-17 22:15:19,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M09-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:19,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M09-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:19,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,404] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:19,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M09_SJ.out.tab [2026-08-17 22:15:21,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M09_marked_dup_metrics.txt [2026-08-17 22:15:21,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M09_marked_dup_metrics.txt [2026-08-17 22:15:21,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M09_marked_dup_metrics.txt [2026-08-17 22:15:21,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M09_marked_dup_metrics.txt [2026-08-17 22:15:21,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M09_marked_dup_metrics.txt [2026-08-17 22:15:21,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M09_hist.pdf [2026-08-17 22:15:21,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:21,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:21,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:21,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:21,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:21,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,614] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,614] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,614] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,615] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,615] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,615] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,615] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:21,633] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,574] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,579] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,579] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,584] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:22,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M09_featureCounts.out [2026-08-17 22:15:23,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:23,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:23,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M09_metrics [2026-08-17 22:15:23,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M22-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:23,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M22-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:23,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:23,634] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M22_SJ.out.tab [2026-08-17 22:15:25,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M22_marked_dup_metrics.txt [2026-08-17 22:15:25,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M22_marked_dup_metrics.txt [2026-08-17 22:15:25,609] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M22_marked_dup_metrics.txt [2026-08-17 22:15:25,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M22_marked_dup_metrics.txt [2026-08-17 22:15:25,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M22_marked_dup_metrics.txt [2026-08-17 22:15:25,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M22_hist.pdf [2026-08-17 22:15:25,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:25,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:25,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:25,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:25,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:25,762] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,770] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:25,799] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,766] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,766] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,774] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,774] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,775] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,775] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,775] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,775] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,775] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:26,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M22_featureCounts.out [2026-08-17 22:15:27,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:27,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:27,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M22_metrics [2026-08-17 22:15:27,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M14-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:27,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M14-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:27,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,977] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:27,985] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M14_SJ.out.tab [2026-08-17 22:15:29,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M14_marked_dup_metrics.txt [2026-08-17 22:15:29,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M14_marked_dup_metrics.txt [2026-08-17 22:15:29,980] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M14_marked_dup_metrics.txt [2026-08-17 22:15:29,980] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M14_marked_dup_metrics.txt [2026-08-17 22:15:29,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M14_marked_dup_metrics.txt [2026-08-17 22:15:30,032] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:30,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:30,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:30,036] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:30,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:30,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M14_hist.pdf [2026-08-17 22:15:30,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:30,119] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,062] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,066] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:31,091] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M14_featureCounts.out [2026-08-17 22:15:32,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:32,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:32,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M14_metrics [2026-08-17 22:15:32,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M04-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:32,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M04-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:32,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,256] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,257] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:32,257] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M04_SJ.out.tab [2026-08-17 22:15:34,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M04_marked_dup_metrics.txt [2026-08-17 22:15:34,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M04_marked_dup_metrics.txt [2026-08-17 22:15:34,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M04_marked_dup_metrics.txt [2026-08-17 22:15:34,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M04_marked_dup_metrics.txt [2026-08-17 22:15:34,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M04_marked_dup_metrics.txt [2026-08-17 22:15:34,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:34,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:34,254] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:34,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:34,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:34,333] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M04_hist.pdf [2026-08-17 22:15:34,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,373] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:34,395] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,343] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,347] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,348] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:35,367] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M04_featureCounts.out [2026-08-17 22:15:36,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:36,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:36,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M04_metrics [2026-08-17 22:15:36,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M15-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:36,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M15-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:36,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:36,460] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M15_SJ.out.tab [2026-08-17 22:15:38,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M15_marked_dup_metrics.txt [2026-08-17 22:15:38,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M15_marked_dup_metrics.txt [2026-08-17 22:15:38,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M15_marked_dup_metrics.txt [2026-08-17 22:15:38,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:38,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:38,287] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:38,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:38,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:38,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M15_hist.pdf [2026-08-17 22:15:38,402] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,406] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,412] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:38,431] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,400] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,405] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:39,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M15_featureCounts.out [2026-08-17 22:15:40,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:40,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:40,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M15_metrics [2026-08-17 22:15:40,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M07-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:40,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M07-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:40,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,444] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:40,451] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M07_SJ.out.tab [2026-08-17 22:15:42,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M07_marked_dup_metrics.txt [2026-08-17 22:15:42,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M07_marked_dup_metrics.txt [2026-08-17 22:15:42,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M07_marked_dup_metrics.txt [2026-08-17 22:15:42,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M07_marked_dup_metrics.txt [2026-08-17 22:15:42,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M07_marked_dup_metrics.txt [2026-08-17 22:15:42,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:42,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:42,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:42,738] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:42,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:42,811] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M07_hist.pdf [2026-08-17 22:15:42,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:42,902] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,843] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,843] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,843] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,843] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,844] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,844] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,844] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:43,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M07_featureCounts.out [2026-08-17 22:15:44,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:44,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:44,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M07_metrics [2026-08-17 22:15:44,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M20-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:44,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M20-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:44,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:44,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M20_SJ.out.tab [2026-08-17 22:15:47,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M20_marked_dup_metrics.txt [2026-08-17 22:15:47,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M20_marked_dup_metrics.txt [2026-08-17 22:15:47,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M20_marked_dup_metrics.txt [2026-08-17 22:15:47,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M20_marked_dup_metrics.txt [2026-08-17 22:15:47,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M20_marked_dup_metrics.txt [2026-08-17 22:15:47,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:47,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:47,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:47,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:47,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:47,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M20_hist.pdf [2026-08-17 22:15:47,406] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,409] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,414] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:47,433] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,386] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,394] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,395] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:48,415] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M20_featureCounts.out [2026-08-17 22:15:49,330] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:49,335] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:49,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M20_metrics [2026-08-17 22:15:49,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M26-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:49,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M26-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:49,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,530] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:49,537] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M26_SJ.out.tab [2026-08-17 22:15:51,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M26_marked_dup_metrics.txt [2026-08-17 22:15:51,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M26_marked_dup_metrics.txt [2026-08-17 22:15:51,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M26_marked_dup_metrics.txt [2026-08-17 22:15:51,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M26_marked_dup_metrics.txt [2026-08-17 22:15:51,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M26_marked_dup_metrics.txt [2026-08-17 22:15:51,940] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:51,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:51,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:51,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:51,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:51,998] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M26_hist.pdf [2026-08-17 22:15:52,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,032] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,032] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,038] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:52,068] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,017] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,017] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,018] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,018] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,018] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,018] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,018] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,040] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M26_featureCounts.out [2026-08-17 22:15:53,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:53,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:53,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M26_metrics [2026-08-17 22:15:54,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M10-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:15:54,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M10-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:15:54,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,083] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:54,084] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M10_SJ.out.tab [2026-08-17 22:15:56,179] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M10_marked_dup_metrics.txt [2026-08-17 22:15:56,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M10_marked_dup_metrics.txt [2026-08-17 22:15:56,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M10_marked_dup_metrics.txt [2026-08-17 22:15:56,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M10_marked_dup_metrics.txt [2026-08-17 22:15:56,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M10_marked_dup_metrics.txt [2026-08-17 22:15:56,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M10_hist.pdf [2026-08-17 22:15:56,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:56,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:56,232] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:56,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:56,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:56,330] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:56,369] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,308] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,309] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:57,328] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M10_featureCounts.out [2026-08-17 22:15:58,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:58,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:58,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M10_metrics [2026-08-17 22:15:58,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M18-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:15:58,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M18-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:15:58,367] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,372] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:15:58,378] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M18_SJ.out.tab [2026-08-17 22:16:00,498] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M18_marked_dup_metrics.txt [2026-08-17 22:16:00,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M18_marked_dup_metrics.txt [2026-08-17 22:16:00,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M18_marked_dup_metrics.txt [2026-08-17 22:16:00,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M18_marked_dup_metrics.txt [2026-08-17 22:16:00,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M18_marked_dup_metrics.txt [2026-08-17 22:16:00,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M18_hist.pdf [2026-08-17 22:16:00,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:00,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:00,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:00,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:00,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:00,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:00,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,613] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:01,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M18_featureCounts.out [2026-08-17 22:16:02,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:02,590] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:02,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M18_metrics [2026-08-17 22:16:02,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M02-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:16:02,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M02-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:16:02,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:02,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M02_SJ.out.tab [2026-08-17 22:16:04,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M02_marked_dup_metrics.txt [2026-08-17 22:16:04,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M02_marked_dup_metrics.txt [2026-08-17 22:16:04,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M02_marked_dup_metrics.txt [2026-08-17 22:16:04,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M02_marked_dup_metrics.txt [2026-08-17 22:16:04,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M02_marked_dup_metrics.txt [2026-08-17 22:16:04,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M02_hist.pdf [2026-08-17 22:16:04,809] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:04,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:04,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:04,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:04,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:04,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,947] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:04,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,922] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,928] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,928] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,928] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,928] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,928] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,929] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,929] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:05,948] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M02_featureCounts.out [2026-08-17 22:16:06,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:06,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:06,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M02_metrics [2026-08-17 22:16:06,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M21-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:16:06,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M21-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:16:07,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:07,081] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M21_SJ.out.tab [2026-08-17 22:16:09,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M21_marked_dup_metrics.txt [2026-08-17 22:16:09,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M21_marked_dup_metrics.txt [2026-08-17 22:16:09,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M21_marked_dup_metrics.txt [2026-08-17 22:16:09,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M21_marked_dup_metrics.txt [2026-08-17 22:16:09,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M21_marked_dup_metrics.txt [2026-08-17 22:16:09,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:09,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:09,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:09,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:09,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:09,500] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M21_hist.pdf [2026-08-17 22:16:09,581] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,584] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,590] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:09,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,577] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,582] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:10,601] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M21_featureCounts.out [2026-08-17 22:16:11,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:11,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:11,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M21_metrics [2026-08-17 22:16:11,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M13-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:16:11,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M13-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:16:11,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:11,607] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M13_SJ.out.tab [2026-08-17 22:16:13,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M13_marked_dup_metrics.txt [2026-08-17 22:16:13,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M13_marked_dup_metrics.txt [2026-08-17 22:16:13,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M13_marked_dup_metrics.txt [2026-08-17 22:16:13,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M13_marked_dup_metrics.txt [2026-08-17 22:16:13,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M13_marked_dup_metrics.txt [2026-08-17 22:16:13,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M13_hist.pdf [2026-08-17 22:16:13,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:13,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:13,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:13,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:13,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:13,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:13,997] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:14,978] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:15,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M13_featureCounts.out [2026-08-17 22:16:15,903] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:15,907] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:15,912] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M13_metrics [2026-08-17 22:16:15,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M19-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:16:15,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M19-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:16:16,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,068] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,068] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:16,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M19_SJ.out.tab [2026-08-17 22:16:18,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M19_marked_dup_metrics.txt [2026-08-17 22:16:18,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M19_marked_dup_metrics.txt [2026-08-17 22:16:18,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M19_marked_dup_metrics.txt [2026-08-17 22:16:18,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M19_marked_dup_metrics.txt [2026-08-17 22:16:18,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M19_marked_dup_metrics.txt [2026-08-17 22:16:18,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:18,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:18,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:18,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:18,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:18,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M19_hist.pdf [2026-08-17 22:16:18,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,608] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,609] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,609] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,609] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,609] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,609] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:18,628] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:19,607] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M19_featureCounts.out [2026-08-17 22:16:20,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:20,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:20,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M19_metrics [2026-08-17 22:16:20,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M24-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:16:20,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M24-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:16:20,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,667] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:20,668] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M24_SJ.out.tab [2026-08-17 22:16:22,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M24_marked_dup_metrics.txt [2026-08-17 22:16:22,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M24_marked_dup_metrics.txt [2026-08-17 22:16:22,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M24_marked_dup_metrics.txt [2026-08-17 22:16:22,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M24_marked_dup_metrics.txt [2026-08-17 22:16:22,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M24_marked_dup_metrics.txt [2026-08-17 22:16:22,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M24_hist.pdf [2026-08-17 22:16:22,643] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:22,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:22,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:22,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:22,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:22,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,748] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,754] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:22,773] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,728] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,733] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:23,752] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M24_featureCounts.out [2026-08-17 22:16:24,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:24,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:24,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M24_metrics [2026-08-17 22:16:24,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M06-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:16:24,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M06-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:16:24,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,816] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,817] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:24,817] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M06_SJ.out.tab [2026-08-17 22:16:27,133] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M06_marked_dup_metrics.txt [2026-08-17 22:16:27,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M06_marked_dup_metrics.txt [2026-08-17 22:16:27,137] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M06_marked_dup_metrics.txt [2026-08-17 22:16:27,137] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M06_marked_dup_metrics.txt [2026-08-17 22:16:27,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M06_marked_dup_metrics.txt [2026-08-17 22:16:27,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M06_hist.pdf [2026-08-17 22:16:27,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:27,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:27,201] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:27,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:27,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:27,309] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,317] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,317] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,317] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:27,340] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,325] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,325] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,325] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,326] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,326] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,326] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,326] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:28,345] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M06_featureCounts.out [2026-08-17 22:16:29,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:29,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:29,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M06_metrics [2026-08-17 22:16:29,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M25-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:16:29,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M25-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:16:29,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,399] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,400] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:29,400] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M25_SJ.out.tab [2026-08-17 22:16:31,814] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M25_marked_dup_metrics.txt [2026-08-17 22:16:31,819] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M25_marked_dup_metrics.txt [2026-08-17 22:16:31,820] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M25_marked_dup_metrics.txt [2026-08-17 22:16:31,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M25_marked_dup_metrics.txt [2026-08-17 22:16:31,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M25_marked_dup_metrics.txt [2026-08-17 22:16:31,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:31,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:31,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:31,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:31,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:31,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M25_hist.pdf [2026-08-17 22:16:31,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,957] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,957] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,962] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:31,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,944] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:32,964] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M25_featureCounts.out [2026-08-17 22:16:33,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:33,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:33,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M25_metrics [2026-08-17 22:16:33,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M17-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:16:33,914] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M17-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:16:34,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:34,076] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M17_SJ.out.tab [2026-08-17 22:16:36,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M17_marked_dup_metrics.txt [2026-08-17 22:16:36,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M17_marked_dup_metrics.txt [2026-08-17 22:16:36,286] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M17_marked_dup_metrics.txt [2026-08-17 22:16:36,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M17_marked_dup_metrics.txt [2026-08-17 22:16:36,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M17_marked_dup_metrics.txt [2026-08-17 22:16:36,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M17_hist.pdf [2026-08-17 22:16:36,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:36,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:36,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:36,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:36,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:36,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:36,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:37,441] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M17_featureCounts.out [2026-08-17 22:16:38,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:38,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:38,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M17_metrics [2026-08-17 22:16:38,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M01-STAT5a-WT_R1_001.fastq.gz [2026-08-17 22:16:38,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M01-STAT5a-WT_R2_001.fastq.gz [2026-08-17 22:16:38,561] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:38,569] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M01_SJ.out.tab [2026-08-17 22:16:40,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M01_marked_dup_metrics.txt [2026-08-17 22:16:40,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M01_marked_dup_metrics.txt [2026-08-17 22:16:40,264] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M01_marked_dup_metrics.txt [2026-08-17 22:16:40,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M01_marked_dup_metrics.txt [2026-08-17 22:16:40,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M01_marked_dup_metrics.txt [2026-08-17 22:16:40,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:40,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:40,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:40,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:40,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:40,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M01_hist.pdf [2026-08-17 22:16:40,424] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:40,462] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,387] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:41,406] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M01_featureCounts.out [2026-08-17 22:16:42,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:42,286] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:42,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M01_metrics [2026-08-17 22:16:42,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M12-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:16:42,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M12-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:16:42,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,484] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:42,490] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M12_SJ.out.tab [2026-08-17 22:16:44,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M12_marked_dup_metrics.txt [2026-08-17 22:16:44,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M12_marked_dup_metrics.txt [2026-08-17 22:16:44,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M12_marked_dup_metrics.txt [2026-08-17 22:16:44,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M12_marked_dup_metrics.txt [2026-08-17 22:16:44,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M12_marked_dup_metrics.txt [2026-08-17 22:16:44,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:44,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:44,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:44,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:44,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:44,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M12_hist.pdf [2026-08-17 22:16:44,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,778] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,783] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:44,803] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,748] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,752] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:45,780] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M12_featureCounts.out [2026-08-17 22:16:46,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:46,684] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:46,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M12_metrics [2026-08-17 22:16:46,735] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M23-STAT5a-KO_R1_001.fastq.gz [2026-08-17 22:16:46,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260-M23-STAT5a-KO_R2_001.fastq.gz [2026-08-17 22:16:46,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:46,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:46,906] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:46,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:46,912] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:46,912] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:46,912] multiqc [DEBUG ] File ignored by 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22:16:46,912] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M23_SJ.out.tab [2026-08-17 22:16:48,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M23_marked_dup_metrics.txt [2026-08-17 22:16:48,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M23_marked_dup_metrics.txt [2026-08-17 22:16:48,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M23_marked_dup_metrics.txt [2026-08-17 22:16:48,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M23_marked_dup_metrics.txt [2026-08-17 22:16:48,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M23_marked_dup_metrics.txt [2026-08-17 22:16:48,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search 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multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,991] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:50,992] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M05_SJ.out.tab [2026-08-17 22:16:52,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M05_marked_dup_metrics.txt [2026-08-17 22:16:52,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M05_marked_dup_metrics.txt [2026-08-17 22:16:52,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M05_marked_dup_metrics.txt [2026-08-17 22:16:52,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M05_marked_dup_metrics.txt [2026-08-17 22:16:52,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M05_marked_dup_metrics.txt [2026-08-17 22:16:52,809] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G260_M05_hist.pdf [2026-08-17 22:16:52,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:52,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:52,835] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:52,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:52,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:52,973] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:52,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:52,977] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:52,978] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:52,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:52,984] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:52,984] multiqc [DEBUG ] File ignored by 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longranger/invocation because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:53,954] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:53,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:53,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:53,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:53,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:53,975] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G260_M05_featureCounts.out [2026-08-17 22:16:54,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:54,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:54,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G260_M05_metrics [2026-08-17 22:16:54,940] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:16:54,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:16:54,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:16:54,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:16:54,964] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:16:54,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:16:54,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-17 22:16:54,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-17 22:16:55,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-17 22:16:55,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-17 22:16:55,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-17 22:16:55,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-17 22:16:55,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-17 22:16:55,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M09.o7164659 [2026-08-17 22:16:55,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M09.o7164659 [2026-08-17 22:16:55,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M09.o7164659 [2026-08-17 22:16:55,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M23.o7164673 [2026-08-17 22:16:55,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M23.o7164673 [2026-08-17 22:16:55,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M23.o7164673 [2026-08-17 22:16:55,110] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M24.o7164674 [2026-08-17 22:16:55,114] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M24.o7164674 [2026-08-17 22:16:55,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M24.o7164674 [2026-08-17 22:16:55,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G260_RNAseq_G260_M19.o7164669 [2026-08-17 22:16:55,140] multiqc [DEBUG ] File ignored by lima/summary because it 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] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M08.o7166280 [2026-08-17 22:17:13,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M08.o7166280 [2026-08-17 22:17:13,065] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M19.o7166291 [2026-08-17 22:17:13,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M19.o7166291 [2026-08-17 22:17:13,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M19.o7166291 [2026-08-17 22:17:13,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M19.o7166291 [2026-08-17 22:17:13,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M19.o7166291 [2026-08-17 22:17:13,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M21.o7166293 [2026-08-17 22:17:13,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M21.o7166293 [2026-08-17 22:17:13,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M21.o7166293 [2026-08-17 22:17:13,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M21.o7166293 [2026-08-17 22:17:13,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M21.o7166293 [2026-08-17 22:17:13,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M10.o7166282 [2026-08-17 22:17:13,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M10.o7166282 [2026-08-17 22:17:13,177] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M10.o7166282 [2026-08-17 22:17:13,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M10.o7166282 [2026-08-17 22:17:13,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M10.o7166282 [2026-08-17 22:17:13,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M03.o7166275 [2026-08-17 22:17:13,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M03.o7166275 [2026-08-17 22:17:13,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M03.o7166275 [2026-08-17 22:17:13,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M03.o7166275 [2026-08-17 22:17:13,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M03.o7166275 [2026-08-17 22:17:13,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M15.o7166287 [2026-08-17 22:17:13,257] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M15.o7166287 [2026-08-17 22:17:13,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M15.o7166287 [2026-08-17 22:17:13,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M15.o7166287 [2026-08-17 22:17:13,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M15.o7166287 [2026-08-17 22:17:13,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M09.o7166281 [2026-08-17 22:17:13,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M09.o7166281 [2026-08-17 22:17:13,293] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M09.o7166281 [2026-08-17 22:17:13,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M09.o7166281 [2026-08-17 22:17:13,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M09.o7166281 [2026-08-17 22:17:13,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M12.o7166284 [2026-08-17 22:17:13,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M12.o7166284 [2026-08-17 22:17:13,331] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M12.o7166284 [2026-08-17 22:17:13,331] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M12.o7166284 [2026-08-17 22:17:13,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M12.o7166284 [2026-08-17 22:17:13,371] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M01.o7166273 [2026-08-17 22:17:13,376] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M01.o7166273 [2026-08-17 22:17:13,376] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M01.o7166273 [2026-08-17 22:17:13,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M01.o7166273 [2026-08-17 22:17:13,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M01.o7166273 [2026-08-17 22:17:13,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M05.o7166277 [2026-08-17 22:17:13,413] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M05.o7166277 [2026-08-17 22:17:13,414] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M05.o7166277 [2026-08-17 22:17:13,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M05.o7166277 [2026-08-17 22:17:13,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M05.o7166277 [2026-08-17 22:17:13,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M18.o7166290 [2026-08-17 22:17:13,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M18.o7166290 [2026-08-17 22:17:13,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M18.o7166290 [2026-08-17 22:17:13,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M18.o7166290 [2026-08-17 22:17:13,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M18.o7166290 [2026-08-17 22:17:13,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M16.o7166288 [2026-08-17 22:17:13,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M16.o7166288 [2026-08-17 22:17:13,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M16.o7166288 [2026-08-17 22:17:13,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M16.o7166288 [2026-08-17 22:17:13,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M16.o7166288 [2026-08-17 22:17:13,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M23.o7166295 [2026-08-17 22:17:13,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M23.o7166295 [2026-08-17 22:17:13,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M23.o7166295 [2026-08-17 22:17:13,558] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M23.o7166295 [2026-08-17 22:17:13,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M23.o7166295 [2026-08-17 22:17:13,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M04.o7166276 [2026-08-17 22:17:13,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M04.o7166276 [2026-08-17 22:17:13,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M04.o7166276 [2026-08-17 22:17:13,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M04.o7166276 [2026-08-17 22:17:13,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M04.o7166276 [2026-08-17 22:17:13,644] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M11.o7166283 [2026-08-17 22:17:13,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M11.o7166283 [2026-08-17 22:17:13,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M11.o7166283 [2026-08-17 22:17:13,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M11.o7166283 [2026-08-17 22:17:13,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G260_RNAseq_G260_M11.o7166283 [2026-08-17 22:17:13,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-17 22:17:13,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-17 22:17:13,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-17 22:17:13,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-17 22:17:13,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-17 22:17:13,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-17 22:17:13,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-08-17 22:17:13,750] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,755] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,762] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:13,763] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:17:14,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:17:14,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:17:14,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:17:14,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:17:14,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:17:14,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:17:14,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:17:14,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:17:14,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:17:14,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:17:15,661] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-17 22:17:15,682] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-17 22:17:15,686] multiqc [DEBUG ] No samples found: custom_content [2026-08-17 22:17:15,711] multiqc [DEBUG ] No samples found: ccs [2026-08-17 22:17:15,732] multiqc [DEBUG ] No samples found: ngsderive [2026-08-17 22:17:15,761] multiqc [DEBUG ] No samples found: purple [2026-08-17 22:17:15,771] multiqc [DEBUG ] No samples found: conpair [2026-08-17 22:17:15,787] multiqc [DEBUG ] No samples found: lima [2026-08-17 22:17:15,811] multiqc [DEBUG ] No samples found: peddy [2026-08-17 22:17:15,837] multiqc [DEBUG ] No samples found: somalier [2026-08-17 22:17:15,859] multiqc [DEBUG ] No samples found: methylQA [2026-08-17 22:17:15,902] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-17 22:17:15,902] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-17 22:17:15,902] multiqc [DEBUG ] No samples found: mosdepth [2026-08-17 22:17:15,913] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-17 22:17:15,942] multiqc [DEBUG ] No samples found: qualimap [2026-08-17 22:17:15,971] multiqc [DEBUG ] No samples found: preseq [2026-08-17 22:17:15,997] multiqc [DEBUG ] No samples found: quast [2026-08-17 22:17:16,019] multiqc [DEBUG ] No samples found: qorts [2026-08-17 22:17:16,038] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-17 22:17:16,063] multiqc [DEBUG ] No samples found: rockhopper [2026-08-17 22:17:16,085] multiqc [DEBUG ] No samples found: rsem [2026-08-17 22:17:16,168] multiqc.modules.rseqc.rseqc [INFO ] Found 26 infer_experiment reports [2026-08-17 22:17:16,184] multiqc [DEBUG ] No samples found: busco [2026-08-17 22:17:16,203] multiqc [DEBUG ] No samples found: bustools [2026-08-17 22:17:16,229] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-17 22:17:16,249] multiqc [DEBUG ] No samples found: gffcompare [2026-08-17 22:17:16,255] multiqc [DEBUG ] No samples found: disambiguate [2026-08-17 22:17:16,274] multiqc [DEBUG ] No samples found: supernova [2026-08-17 22:17:16,290] multiqc [DEBUG ] No samples found: deeptools [2026-08-17 22:17:16,318] multiqc [DEBUG ] No samples found: sargasso [2026-08-17 22:17:16,327] multiqc [DEBUG ] No samples found: verifybamid [2026-08-17 22:17:16,333] multiqc [DEBUG ] No samples found: mirtrace [2026-08-17 22:17:16,340] multiqc [DEBUG ] No samples found: happy [2026-08-17 22:17:16,346] multiqc [DEBUG ] No samples found: mirtop [2026-08-17 22:17:16,351] multiqc [DEBUG ] No samples found: sambamba [2026-08-17 22:17:16,357] multiqc [DEBUG ] No samples found: homer [2026-08-17 22:17:16,361] multiqc [DEBUG ] No samples found: hops [2026-08-17 22:17:16,366] multiqc [DEBUG ] No samples found: macs2 [2026-08-17 22:17:16,372] multiqc [DEBUG ] No samples found: theta2 [2026-08-17 22:17:16,378] multiqc [DEBUG ] No samples found: snpeff [2026-08-17 22:17:16,414] multiqc [DEBUG ] No samples found: gatk [2026-08-17 22:17:16,426] multiqc [DEBUG ] No samples found: htseq [2026-08-17 22:17:16,449] multiqc [DEBUG ] No samples found: bcftools [2026-08-17 22:17:16,480] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M16_sorted [2026-08-17 22:17:16,484] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M08_sorted [2026-08-17 22:17:16,488] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M11_sorted [2026-08-17 22:17:16,492] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M03_sorted [2026-08-17 22:17:16,495] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M09_sorted [2026-08-17 22:17:16,498] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M22_sorted [2026-08-17 22:17:16,502] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M14_sorted [2026-08-17 22:17:16,504] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M04_sorted [2026-08-17 22:17:16,507] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M15_sorted [2026-08-17 22:17:16,510] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M07_sorted [2026-08-17 22:17:16,513] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M20_sorted [2026-08-17 22:17:16,516] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M26_sorted [2026-08-17 22:17:16,519] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M10_sorted [2026-08-17 22:17:16,521] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M18_sorted [2026-08-17 22:17:16,524] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M02_sorted [2026-08-17 22:17:16,526] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M21_sorted [2026-08-17 22:17:16,529] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M13_sorted [2026-08-17 22:17:16,531] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M19_sorted [2026-08-17 22:17:16,532] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M24_sorted [2026-08-17 22:17:16,533] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M06_sorted [2026-08-17 22:17:16,535] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M25_sorted [2026-08-17 22:17:16,536] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M17_sorted [2026-08-17 22:17:16,537] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M01_sorted [2026-08-17 22:17:16,538] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M12_sorted [2026-08-17 22:17:16,540] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M23_sorted [2026-08-17 22:17:16,540] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G260_M05_sorted [2026-08-17 22:17:16,541] multiqc.modules.featureCounts.feature_counts [INFO ] Found 26 reports [2026-08-17 22:17:16,594] multiqc [DEBUG ] No samples found: fgbio [2026-08-17 22:17:16,609] multiqc [DEBUG ] No samples found: dragen [2026-08-17 22:17:16,615] multiqc [DEBUG ] No samples found: dedup [2026-08-17 22:17:16,632] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-17 22:17:16,691] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-17 22:17:16,696] multiqc [DEBUG ] No samples found: jcvi [2026-08-17 22:17:16,701] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-17 22:17:17,723] multiqc.modules.picard.picard [INFO ] Found 26 InsertSizeMetrics reports [2026-08-17 22:17:17,776] multiqc.modules.picard.picard [INFO ] Found 26 MarkDuplicates reports [2026-08-17 22:17:17,835] multiqc.modules.picard.picard [INFO ] Found 26 RnaSeqMetrics reports [2026-08-17 22:17:17,841] multiqc [DEBUG ] No samples found: vep [2026-08-17 22:17:17,849] multiqc [DEBUG ] No samples found: sentieon [2026-08-17 22:17:17,854] multiqc [DEBUG ] No samples found: prokka [2026-08-17 22:17:17,877] multiqc [DEBUG ] No samples found: qc3C [2026-08-17 22:17:17,894] multiqc [DEBUG ] No samples found: nanostat [2026-08-17 22:17:17,901] multiqc [DEBUG ] No samples found: samblaster [2026-08-17 22:17:18,039] multiqc.modules.samtools.samtools [INFO ] Found 78 flagstat reports [2026-08-17 22:17:18,060] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-17 22:17:18,067] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-17 22:17:18,074] multiqc [DEBUG ] No samples found: bamtools [2026-08-17 22:17:18,080] multiqc [DEBUG ] No samples found: jellyfish [2026-08-17 22:17:18,089] multiqc [DEBUG ] No samples found: vcftools [2026-08-17 22:17:18,106] multiqc [DEBUG ] No samples found: longranger [2026-08-17 22:17:18,125] multiqc [DEBUG ] No samples found: stacks [2026-08-17 22:17:18,153] multiqc [DEBUG ] No samples found: varscan2 [2026-08-17 22:17:18,177] multiqc [DEBUG ] No samples found: snippy [2026-08-17 22:17:18,220] multiqc [DEBUG ] No samples found: bbmap [2026-08-17 22:17:18,241] multiqc [DEBUG ] No samples found: bismark [2026-08-17 22:17:18,260] multiqc [DEBUG ] No samples found: biscuit [2026-08-17 22:17:18,287] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-17 22:17:18,304] multiqc [DEBUG ] No samples found: hicup [2026-08-17 22:17:18,323] multiqc [DEBUG ] No samples found: hicpro [2026-08-17 22:17:18,329] multiqc [DEBUG ] No samples found: salmon [2026-08-17 22:17:18,350] multiqc [DEBUG ] No samples found: kallisto [2026-08-17 22:17:18,375] multiqc [DEBUG ] No samples found: slamdunk [2026-08-17 22:17:21,079] multiqc.modules.star.star [INFO ] Found 26 reports and 26 gene count files [2026-08-17 22:17:21,126] multiqc [DEBUG ] No samples found: hisat2 [2026-08-17 22:17:21,142] multiqc [DEBUG ] No samples found: tophat [2026-08-17 22:17:21,172] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-17 22:17:21,199] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-17 22:17:21,214] multiqc [DEBUG ] No samples found: snpsplit [2026-08-17 22:17:21,235] multiqc [DEBUG ] No samples found: odgi [2026-08-17 22:17:21,269] multiqc [DEBUG ] No samples found: pangolin [2026-08-17 22:17:21,279] multiqc [DEBUG ] No samples found: kat [2026-08-17 22:17:21,287] multiqc [DEBUG ] No samples found: leehom [2026-08-17 22:17:21,342] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-17 22:17:21,352] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-17 22:17:21,369] multiqc [DEBUG ] No samples found: cutadapt [2026-08-17 22:17:21,375] multiqc [DEBUG ] No samples found: flexbar [2026-08-17 22:17:21,391] multiqc [DEBUG ] No samples found: kaiju [2026-08-17 22:17:21,407] multiqc [DEBUG ] No samples found: kraken [2026-08-17 22:17:21,423] multiqc [DEBUG ] No samples found: malt [2026-08-17 22:17:21,450] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-17 22:17:21,469] multiqc [DEBUG ] No samples found: sickle [2026-08-17 22:17:21,495] multiqc [DEBUG ] No samples found: skewer [2026-08-17 22:17:21,505] multiqc [DEBUG ] No samples found: sortmerna [2026-08-17 22:17:21,512] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-17 22:17:21,527] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-17 22:17:21,551] multiqc [DEBUG ] No samples found: afterqc [2026-08-17 22:17:21,604] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,625] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,650] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,673] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,690] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,733] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,752] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,775] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,801] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,810] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,827] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,846] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,872] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,890] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,907] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,928] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,952] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:21,981] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,007] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,030] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,052] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,075] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,090] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,107] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,123] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,132] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:17:22,132] multiqc.modules.fastp.fastp [INFO ] Found 26 reports [2026-08-17 22:17:33,882] multiqc.modules.fastqc.fastqc [INFO ] Found 52 reports [2026-08-17 22:17:33,930] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-08-17 22:17:38,367] multiqc [DEBUG ] No samples found: pychopper [2026-08-17 22:17:38,389] multiqc [DEBUG ] No samples found: pycoqc [2026-08-17 22:17:38,413] multiqc [DEBUG ] No samples found: minionqc [2026-08-17 22:17:38,441] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-17 22:17:38,466] multiqc [DEBUG ] No samples found: clusterflow [2026-08-17 22:17:38,490] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-17 22:17:38,514] multiqc [DEBUG ] No samples found: bclconvert [2026-08-17 22:17:38,533] multiqc [DEBUG ] No samples found: interop [2026-08-17 22:17:38,556] multiqc [DEBUG ] No samples found: ivar [2026-08-17 22:17:38,580] multiqc [DEBUG ] No samples found: flash [2026-08-17 22:17:38,607] multiqc [DEBUG ] No samples found: seqyclean [2026-08-17 22:17:38,617] multiqc [DEBUG ] No samples found: optitype [2026-08-17 22:17:38,748] multiqc [INFO ] Compressing plot data [2026-08-17 22:17:41,440] multiqc [INFO ] Report : multiqc_report.html [2026-08-17 22:17:41,440] multiqc [INFO ] Data : multiqc_data [2026-08-17 22:17:41,440] multiqc [DEBUG ] Moving data file from '/scratch/tmp0zzh9ffj/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G260_RNAseq/Scripts/99_final_summary/G260_RNAseq_multiqc_report/multiqc_data' [2026-08-17 22:17:42,082] multiqc [INFO ] MultiQC complete [2026-08-17 22:17:42,082] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers