[2026-08-13 15:07:38,475] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-13 15:07:38,475] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-13 15:07:38,476] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-13 15:07:38,476] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-13 15:07:38,479] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-13 15:07:38,479] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-13 15:07:38,480] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-13 15:07:38,480] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/06_CollectMetrics/ [2026-08-13 15:07:39,044] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-13 15:07:39,044] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/06_CollectMetrics/ [2026-08-13 15:07:39,044] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/99_final_summary/G263_RNAseq_multiqc_report [2026-08-13 15:07:39,044] multiqc [DEBUG ] Template : default [2026-08-13 15:07:39,044] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-13 15:07:39,045] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-13 15:07:39,052] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpevlnikcy [2026-08-13 15:07:39,441] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/SAMPLES [2026-08-13 15:07:39,441] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/03_FASTQC [2026-08-13 15:07:39,441] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/06_CollectMetrics [2026-08-13 15:07:39,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M01-AAV8-Cas9-SG_R1_001.fastq.gz [2026-08-13 15:07:39,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M01-AAV8-Cas9-SG_R2_001.fastq.gz [2026-08-13 15:07:39,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,875] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:39,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M01_SJ.out.tab [2026-08-13 15:07:42,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M01_marked_dup_metrics.txt [2026-08-13 15:07:42,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M01_marked_dup_metrics.txt [2026-08-13 15:07:42,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M01_marked_dup_metrics.txt [2026-08-13 15:07:42,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M01_marked_dup_metrics.txt [2026-08-13 15:07:42,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M01_marked_dup_metrics.txt [2026-08-13 15:07:42,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M01_hist.pdf [2026-08-13 15:07:42,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:42,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:42,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:42,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:42,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:42,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:42,508] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,474] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,474] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,474] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,474] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,475] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,475] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,475] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:43,498] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M01_featureCounts.out [2026-08-13 15:07:44,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:44,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:44,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M01_metrics [2026-08-13 15:07:44,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M03-AAV8-Cas9-SG_R2_001.fastq.gz [2026-08-13 15:07:44,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M03-AAV8-Cas9-SG_R1_001.fastq.gz [2026-08-13 15:07:44,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:44,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M03_SJ.out.tab [2026-08-13 15:07:46,917] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M03_marked_dup_metrics.txt [2026-08-13 15:07:46,922] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M03_marked_dup_metrics.txt [2026-08-13 15:07:46,922] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M03_marked_dup_metrics.txt [2026-08-13 15:07:46,923] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M03_marked_dup_metrics.txt [2026-08-13 15:07:46,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M03_marked_dup_metrics.txt [2026-08-13 15:07:46,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:46,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:46,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:46,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:46,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:47,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M03_hist.pdf [2026-08-13 15:07:47,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,079] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,079] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:47,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,162] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,168] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,168] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,169] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:48,188] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M03_featureCounts.out [2026-08-13 15:07:49,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:49,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:49,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M03_metrics [2026-08-13 15:07:49,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M11-Female-8wk_R1_001.fastq.gz [2026-08-13 15:07:49,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M11-Female-8wk_R2_001.fastq.gz [2026-08-13 15:07:49,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,347] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,348] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:49,348] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M11_SJ.out.tab [2026-08-13 15:07:51,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M11_marked_dup_metrics.txt [2026-08-13 15:07:51,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M11_marked_dup_metrics.txt [2026-08-13 15:07:51,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M11_marked_dup_metrics.txt [2026-08-13 15:07:51,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M11_marked_dup_metrics.txt [2026-08-13 15:07:51,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M11_marked_dup_metrics.txt [2026-08-13 15:07:51,510] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M11_hist.pdf [2026-08-13 15:07:51,522] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:51,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:51,527] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:51,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:51,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:51,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:51,694] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,702] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:52,725] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M11_featureCounts.out [2026-08-13 15:07:53,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:53,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:53,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M11_metrics [2026-08-13 15:07:53,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M10-AAV8-ALB-CUX2-SG_R1_001.fastq.gz [2026-08-13 15:07:53,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M10-AAV8-ALB-CUX2-SG_R2_001.fastq.gz [2026-08-13 15:07:53,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,784] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:53,792] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M10_SJ.out.tab [2026-08-13 15:07:56,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M10_marked_dup_metrics.txt [2026-08-13 15:07:56,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M10_marked_dup_metrics.txt [2026-08-13 15:07:56,075] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M10_marked_dup_metrics.txt [2026-08-13 15:07:56,075] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M10_marked_dup_metrics.txt [2026-08-13 15:07:56,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M10_marked_dup_metrics.txt [2026-08-13 15:07:56,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:56,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:56,119] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:56,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:56,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:56,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M10_hist.pdf [2026-08-13 15:07:56,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,231] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,231] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,232] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:56,256] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,222] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,222] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:57,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M10_featureCounts.out [2026-08-13 15:07:58,178] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:58,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:58,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M10_metrics [2026-08-13 15:07:58,268] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M06-AAV8-TBG-CUX2-SG_R1_001.fastq.gz [2026-08-13 15:07:58,268] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M06-AAV8-TBG-CUX2-SG_R2_001.fastq.gz [2026-08-13 15:07:58,384] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,396] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:07:58,397] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M06_SJ.out.tab [2026-08-13 15:08:00,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M06_marked_dup_metrics.txt [2026-08-13 15:08:00,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M06_marked_dup_metrics.txt [2026-08-13 15:08:00,849] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M06_marked_dup_metrics.txt [2026-08-13 15:08:00,849] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M06_marked_dup_metrics.txt [2026-08-13 15:08:00,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M06_marked_dup_metrics.txt [2026-08-13 15:08:00,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:00,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:00,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:00,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:00,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:00,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M06_hist.pdf [2026-08-13 15:08:01,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,021] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,021] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,021] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,022] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,022] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,022] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,022] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,048] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:01,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,002] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,006] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,006] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,006] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,006] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,007] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,007] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,025] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M06_featureCounts.out [2026-08-13 15:08:02,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:02,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:02,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M06_metrics [2026-08-13 15:08:03,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M13-Female-8wk_R2_001.fastq.gz [2026-08-13 15:08:03,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M13-Female-8wk_R1_001.fastq.gz [2026-08-13 15:08:03,096] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,110] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:03,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M13_SJ.out.tab [2026-08-13 15:08:05,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M13_marked_dup_metrics.txt [2026-08-13 15:08:05,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M13_marked_dup_metrics.txt [2026-08-13 15:08:05,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M13_marked_dup_metrics.txt [2026-08-13 15:08:05,511] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M13_marked_dup_metrics.txt [2026-08-13 15:08:05,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M13_marked_dup_metrics.txt [2026-08-13 15:08:05,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M13_hist.pdf [2026-08-13 15:08:05,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:05,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:05,563] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:05,563] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:05,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:05,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:05,698] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:06,694] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M13_featureCounts.out [2026-08-13 15:08:07,641] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:07,645] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:07,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M13_metrics [2026-08-13 15:08:07,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M09-AAV8-ALB-CUX2-SG_R2_001.fastq.gz [2026-08-13 15:08:07,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M09-AAV8-ALB-CUX2-SG_R1_001.fastq.gz [2026-08-13 15:08:07,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:07,873] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M09_SJ.out.tab [2026-08-13 15:08:09,892] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M09_marked_dup_metrics.txt [2026-08-13 15:08:09,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M09_marked_dup_metrics.txt [2026-08-13 15:08:09,898] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M09_marked_dup_metrics.txt [2026-08-13 15:08:09,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M09_marked_dup_metrics.txt [2026-08-13 15:08:09,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M09_marked_dup_metrics.txt [2026-08-13 15:08:09,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:09,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:09,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:09,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:09,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:09,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M09_hist.pdf [2026-08-13 15:08:10,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,025] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,025] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,031] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,031] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,031] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:10,051] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,019] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,019] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,027] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,051] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M09_featureCounts.out [2026-08-13 15:08:11,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:11,975] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:11,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M09_metrics [2026-08-13 15:08:12,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M08-AAV8-ALB-CUX2-SG_R1_001.fastq.gz [2026-08-13 15:08:12,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M08-AAV8-ALB-CUX2-SG_R2_001.fastq.gz [2026-08-13 15:08:12,211] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:12,222] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M08_SJ.out.tab [2026-08-13 15:08:14,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M08_marked_dup_metrics.txt [2026-08-13 15:08:14,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M08_marked_dup_metrics.txt [2026-08-13 15:08:14,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M08_marked_dup_metrics.txt [2026-08-13 15:08:14,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M08_marked_dup_metrics.txt [2026-08-13 15:08:14,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M08_marked_dup_metrics.txt [2026-08-13 15:08:14,220] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:14,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:14,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:14,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:14,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:14,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M08_hist.pdf [2026-08-13 15:08:14,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,361] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,368] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,368] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,369] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,369] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,369] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,369] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,369] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:14,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,330] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,336] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:15,357] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M08_featureCounts.out [2026-08-13 15:08:16,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:16,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:16,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M08_metrics [2026-08-13 15:08:16,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M02-AAV8-Cas9-SG_R1_001.fastq.gz [2026-08-13 15:08:16,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M02-AAV8-Cas9-SG_R2_001.fastq.gz [2026-08-13 15:08:16,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:16,480] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M02_SJ.out.tab [2026-08-13 15:08:18,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M02_marked_dup_metrics.txt [2026-08-13 15:08:18,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M02_marked_dup_metrics.txt [2026-08-13 15:08:18,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M02_marked_dup_metrics.txt [2026-08-13 15:08:18,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M02_marked_dup_metrics.txt [2026-08-13 15:08:18,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M02_marked_dup_metrics.txt [2026-08-13 15:08:18,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:18,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:18,751] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:18,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:18,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:18,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M02_hist.pdf [2026-08-13 15:08:18,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,860] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,861] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:18,882] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,844] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,844] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,844] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,844] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,845] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,845] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:19,864] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M02_featureCounts.out [2026-08-13 15:08:20,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:20,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:20,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M02_metrics [2026-08-13 15:08:20,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M05-AAV8-TBG-CUX2-SG_R1_001.fastq.gz [2026-08-13 15:08:20,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M05-AAV8-TBG-CUX2-SG_R2_001.fastq.gz [2026-08-13 15:08:20,979] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,988] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:20,989] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M05_SJ.out.tab [2026-08-13 15:08:23,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M05_marked_dup_metrics.txt [2026-08-13 15:08:23,408] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M05_marked_dup_metrics.txt [2026-08-13 15:08:23,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M05_marked_dup_metrics.txt [2026-08-13 15:08:23,409] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M05_marked_dup_metrics.txt [2026-08-13 15:08:23,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M05_marked_dup_metrics.txt [2026-08-13 15:08:23,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M05_hist.pdf [2026-08-13 15:08:23,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:23,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:23,465] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:23,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:23,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:23,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,580] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,580] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,581] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:23,598] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:24,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M05_featureCounts.out [2026-08-13 15:08:25,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:25,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:25,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M05_metrics [2026-08-13 15:08:25,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M04-AAV8-Cas9-SG_R2_001.fastq.gz [2026-08-13 15:08:25,579] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M04-AAV8-Cas9-SG_R1_001.fastq.gz [2026-08-13 15:08:25,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,696] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,697] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,697] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,705] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:25,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M04_SJ.out.tab [2026-08-13 15:08:28,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M04_marked_dup_metrics.txt [2026-08-13 15:08:28,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M04_marked_dup_metrics.txt [2026-08-13 15:08:28,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M04_marked_dup_metrics.txt [2026-08-13 15:08:28,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M04_marked_dup_metrics.txt [2026-08-13 15:08:28,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M04_marked_dup_metrics.txt [2026-08-13 15:08:28,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:28,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:28,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:28,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:28,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:28,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M04_hist.pdf [2026-08-13 15:08:28,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,175] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:28,194] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,151] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,155] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:29,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M04_featureCounts.out [2026-08-13 15:08:30,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:30,082] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:30,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M04_metrics [2026-08-13 15:08:30,146] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M12-Female-8wk_R1_001.fastq.gz [2026-08-13 15:08:30,149] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M12-Female-8wk_R2_001.fastq.gz [2026-08-13 15:08:30,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:30,328] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M12_SJ.out.tab [2026-08-13 15:08:32,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M12_marked_dup_metrics.txt [2026-08-13 15:08:32,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M12_marked_dup_metrics.txt [2026-08-13 15:08:32,291] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M12_marked_dup_metrics.txt [2026-08-13 15:08:32,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M12_marked_dup_metrics.txt [2026-08-13 15:08:32,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M12_marked_dup_metrics.txt [2026-08-13 15:08:32,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:32,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:32,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:32,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:32,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:32,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M12_hist.pdf [2026-08-13 15:08:32,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,467] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,471] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,471] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,471] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,471] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,471] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,472] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,472] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:32,489] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,461] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:33,487] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M12_featureCounts.out [2026-08-13 15:08:34,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:34,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:34,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M12_metrics [2026-08-13 15:08:34,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M07-AAV8-TBG-CUX2-SG_R1_001.fastq.gz [2026-08-13 15:08:34,472] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263-M07-AAV8-TBG-CUX2-SG_R2_001.fastq.gz [2026-08-13 15:08:34,619] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,624] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:34,632] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M07_SJ.out.tab [2026-08-13 15:08:36,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M07_marked_dup_metrics.txt [2026-08-13 15:08:36,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M07_marked_dup_metrics.txt [2026-08-13 15:08:36,844] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M07_marked_dup_metrics.txt [2026-08-13 15:08:36,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M07_marked_dup_metrics.txt [2026-08-13 15:08:36,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M07_marked_dup_metrics.txt [2026-08-13 15:08:36,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:36,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:36,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:36,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:36,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:36,952] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G263_M07_hist.pdf [2026-08-13 15:08:37,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,022] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,042] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:37,999] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,010] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,010] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,010] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,010] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,011] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,011] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,011] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G263_M07_featureCounts.out [2026-08-13 15:08:38,939] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:38,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:38,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G263_M07_metrics [2026-08-13 15:08:39,023] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-13 15:08:39,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-13 15:08:39,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-13 15:08:39,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-13 15:08:39,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-13 15:08:39,055] 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15:08:48,610] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M04.o7167325 [2026-08-13 15:08:48,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M04.o7167325 [2026-08-13 15:08:48,614] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M04.o7167325 [2026-08-13 15:08:48,614] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M04.o7167325 [2026-08-13 15:08:48,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M04.o7167325 [2026-08-13 15:08:48,652] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M08.o7167329 [2026-08-13 15:08:48,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M08.o7167329 [2026-08-13 15:08:48,655] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M08.o7167329 [2026-08-13 15:08:48,655] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M08.o7167329 [2026-08-13 15:08:48,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M08.o7167329 [2026-08-13 15:08:48,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M13.o7167334 [2026-08-13 15:08:48,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M13.o7167334 [2026-08-13 15:08:48,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M13.o7167334 [2026-08-13 15:08:48,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M13.o7167334 [2026-08-13 15:08:48,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M13.o7167334 [2026-08-13 15:08:48,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M07.o7167328 [2026-08-13 15:08:48,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M07.o7167328 [2026-08-13 15:08:48,748] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M07.o7167328 [2026-08-13 15:08:48,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M07.o7167328 [2026-08-13 15:08:48,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M07.o7167328 [2026-08-13 15:08:48,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M01.o7167322 [2026-08-13 15:08:48,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M01.o7167322 [2026-08-13 15:08:48,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M01.o7167322 [2026-08-13 15:08:48,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M01.o7167322 [2026-08-13 15:08:48,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M01.o7167322 [2026-08-13 15:08:48,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M02.o7167323 [2026-08-13 15:08:48,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M02.o7167323 [2026-08-13 15:08:48,864] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M02.o7167323 [2026-08-13 15:08:48,864] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M02.o7167323 [2026-08-13 15:08:48,869] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M02.o7167323 [2026-08-13 15:08:48,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M03.o7167324 [2026-08-13 15:08:48,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M03.o7167324 [2026-08-13 15:08:48,900] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M03.o7167324 [2026-08-13 15:08:48,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M03.o7167324 [2026-08-13 15:08:48,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M03.o7167324 [2026-08-13 15:08:48,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M05.o7167326 [2026-08-13 15:08:48,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M05.o7167326 [2026-08-13 15:08:48,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M05.o7167326 [2026-08-13 15:08:48,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M05.o7167326 [2026-08-13 15:08:48,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M05.o7167326 [2026-08-13 15:08:49,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M09.o7167330 [2026-08-13 15:08:49,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M09.o7167330 [2026-08-13 15:08:49,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M09.o7167330 [2026-08-13 15:08:49,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M09.o7167330 [2026-08-13 15:08:49,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M09.o7167330 [2026-08-13 15:08:49,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M12.o7167333 [2026-08-13 15:08:49,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M12.o7167333 [2026-08-13 15:08:49,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M12.o7167333 [2026-08-13 15:08:49,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M12.o7167333 [2026-08-13 15:08:49,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M12.o7167333 [2026-08-13 15:08:49,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M06.o7167327 [2026-08-13 15:08:49,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M06.o7167327 [2026-08-13 15:08:49,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M06.o7167327 [2026-08-13 15:08:49,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M06.o7167327 [2026-08-13 15:08:49,113] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M06.o7167327 [2026-08-13 15:08:49,151] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M11.o7167332 [2026-08-13 15:08:49,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M11.o7167332 [2026-08-13 15:08:49,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M11.o7167332 [2026-08-13 15:08:49,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M11.o7167332 [2026-08-13 15:08:49,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G263_RNAseq_G263_M11.o7167332 [2026-08-13 15:08:49,187] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-13 15:08:49,191] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-13 15:08:49,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-13 15:08:49,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-13 15:08:49,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-08-13 15:08:49,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:49,282] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 15:08:50,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 15:08:50,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 15:08:50,129] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 15:08:50,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 15:08:50,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 15:08:50,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 15:08:50,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 15:08:50,195] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 15:08:50,195] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 15:08:50,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 15:08:51,362] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-13 15:08:51,365] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-13 15:08:51,367] multiqc [DEBUG ] No samples found: custom_content [2026-08-13 15:08:51,371] multiqc [DEBUG ] No samples found: ccs [2026-08-13 15:08:51,376] multiqc [DEBUG ] No samples found: ngsderive [2026-08-13 15:08:51,380] multiqc [DEBUG ] No samples found: purple [2026-08-13 15:08:51,385] multiqc [DEBUG ] No samples found: conpair [2026-08-13 15:08:51,389] multiqc [DEBUG ] No samples found: lima [2026-08-13 15:08:51,394] multiqc [DEBUG ] No samples found: peddy [2026-08-13 15:08:51,398] multiqc [DEBUG ] No samples found: somalier [2026-08-13 15:08:51,403] multiqc [DEBUG ] No samples found: methylQA [2026-08-13 15:08:51,411] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-13 15:08:51,411] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-13 15:08:51,411] multiqc [DEBUG ] No samples found: mosdepth [2026-08-13 15:08:51,415] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-13 15:08:51,418] multiqc [DEBUG ] No samples found: qualimap [2026-08-13 15:08:51,440] multiqc [DEBUG ] No samples found: preseq [2026-08-13 15:08:51,446] multiqc [DEBUG ] No samples found: quast [2026-08-13 15:08:51,462] multiqc [DEBUG ] No samples found: qorts [2026-08-13 15:08:51,468] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-13 15:08:51,473] multiqc [DEBUG ] No samples found: rockhopper [2026-08-13 15:08:51,496] multiqc [DEBUG ] No samples found: rsem [2026-08-13 15:08:51,529] multiqc.modules.rseqc.rseqc [INFO ] Found 13 infer_experiment reports [2026-08-13 15:08:51,562] multiqc [DEBUG ] No samples found: busco [2026-08-13 15:08:51,570] multiqc [DEBUG ] No samples found: bustools [2026-08-13 15:08:51,577] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-13 15:08:51,582] multiqc [DEBUG ] No samples found: gffcompare [2026-08-13 15:08:51,591] multiqc [DEBUG ] No samples found: disambiguate [2026-08-13 15:08:51,598] multiqc [DEBUG ] No samples found: supernova [2026-08-13 15:08:51,614] multiqc [DEBUG ] No samples found: deeptools [2026-08-13 15:08:51,621] multiqc [DEBUG ] No samples found: sargasso [2026-08-13 15:08:51,627] multiqc [DEBUG ] No samples found: verifybamid [2026-08-13 15:08:51,631] multiqc [DEBUG ] No samples found: mirtrace [2026-08-13 15:08:51,636] multiqc [DEBUG ] No samples found: happy [2026-08-13 15:08:51,640] multiqc [DEBUG ] No samples found: mirtop [2026-08-13 15:08:51,645] multiqc [DEBUG ] No samples found: sambamba [2026-08-13 15:08:51,651] multiqc [DEBUG ] No samples found: homer [2026-08-13 15:08:51,656] multiqc [DEBUG ] No samples found: hops [2026-08-13 15:08:51,661] multiqc [DEBUG ] No samples found: macs2 [2026-08-13 15:08:51,669] multiqc [DEBUG ] No samples found: theta2 [2026-08-13 15:08:51,675] multiqc [DEBUG ] No samples found: snpeff [2026-08-13 15:08:51,683] multiqc [DEBUG ] No samples found: gatk [2026-08-13 15:08:51,689] multiqc [DEBUG ] No samples found: htseq [2026-08-13 15:08:51,696] multiqc [DEBUG ] No samples found: bcftools [2026-08-13 15:08:51,724] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M01_sorted [2026-08-13 15:08:51,727] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M03_sorted [2026-08-13 15:08:51,730] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M11_sorted [2026-08-13 15:08:51,733] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M10_sorted [2026-08-13 15:08:51,736] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M06_sorted [2026-08-13 15:08:51,739] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M13_sorted [2026-08-13 15:08:51,741] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M09_sorted [2026-08-13 15:08:51,743] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M08_sorted [2026-08-13 15:08:51,745] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M02_sorted [2026-08-13 15:08:51,747] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M05_sorted [2026-08-13 15:08:51,748] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M04_sorted [2026-08-13 15:08:51,749] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M12_sorted [2026-08-13 15:08:51,751] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G263_M07_sorted [2026-08-13 15:08:51,751] multiqc.modules.featureCounts.feature_counts [INFO ] Found 13 reports [2026-08-13 15:08:51,783] multiqc [DEBUG ] No samples found: fgbio [2026-08-13 15:08:51,810] multiqc [DEBUG ] No samples found: dragen [2026-08-13 15:08:51,818] multiqc [DEBUG ] No samples found: dedup [2026-08-13 15:08:51,823] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-13 15:08:51,952] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-13 15:08:51,960] multiqc [DEBUG ] No samples found: jcvi [2026-08-13 15:08:51,970] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-13 15:08:52,534] multiqc.modules.picard.picard [INFO ] Found 13 InsertSizeMetrics reports [2026-08-13 15:08:52,552] multiqc.modules.picard.picard [INFO ] Found 13 MarkDuplicates reports [2026-08-13 15:08:52,588] multiqc.modules.picard.picard [INFO ] Found 13 RnaSeqMetrics reports [2026-08-13 15:08:52,594] multiqc [DEBUG ] No samples found: vep [2026-08-13 15:08:52,603] multiqc [DEBUG ] No samples found: sentieon [2026-08-13 15:08:52,607] multiqc [DEBUG ] No samples found: prokka [2026-08-13 15:08:52,612] multiqc [DEBUG ] No samples found: qc3C [2026-08-13 15:08:52,620] multiqc [DEBUG ] No samples found: nanostat [2026-08-13 15:08:52,625] multiqc [DEBUG ] No samples found: samblaster [2026-08-13 15:08:52,677] multiqc.modules.samtools.samtools [INFO ] Found 39 flagstat reports [2026-08-13 15:08:52,681] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-13 15:08:52,686] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-13 15:08:52,691] multiqc [DEBUG ] No samples found: bamtools [2026-08-13 15:08:52,699] multiqc [DEBUG ] No samples found: jellyfish [2026-08-13 15:08:52,709] multiqc [DEBUG ] No samples found: vcftools [2026-08-13 15:08:52,714] multiqc [DEBUG ] No samples found: longranger [2026-08-13 15:08:52,719] multiqc [DEBUG ] No samples found: stacks [2026-08-13 15:08:52,724] multiqc [DEBUG ] No samples found: varscan2 [2026-08-13 15:08:52,732] multiqc [DEBUG ] No samples found: snippy [2026-08-13 15:08:52,786] multiqc [DEBUG ] No samples found: bbmap [2026-08-13 15:08:52,810] multiqc [DEBUG ] No samples found: bismark [2026-08-13 15:08:52,837] multiqc [DEBUG ] No samples found: biscuit [2026-08-13 15:08:52,862] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-13 15:08:52,885] multiqc [DEBUG ] No samples found: hicup [2026-08-13 15:08:52,910] multiqc [DEBUG ] No samples found: hicpro [2026-08-13 15:08:52,919] multiqc [DEBUG ] No samples found: salmon [2026-08-13 15:08:52,937] multiqc [DEBUG ] No samples found: kallisto [2026-08-13 15:08:52,943] multiqc [DEBUG ] No samples found: slamdunk [2026-08-13 15:08:54,291] multiqc.modules.star.star [INFO ] Found 13 reports and 13 gene count files [2026-08-13 15:08:54,298] multiqc [DEBUG ] No samples found: hisat2 [2026-08-13 15:08:54,304] multiqc [DEBUG ] No samples found: tophat [2026-08-13 15:08:54,314] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-13 15:08:54,336] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-13 15:08:54,343] multiqc [DEBUG ] No samples found: snpsplit [2026-08-13 15:08:54,348] multiqc [DEBUG ] No samples found: odgi [2026-08-13 15:08:54,353] multiqc [DEBUG ] No samples found: pangolin [2026-08-13 15:08:54,359] multiqc [DEBUG ] No samples found: kat [2026-08-13 15:08:54,365] multiqc [DEBUG ] No samples found: leehom [2026-08-13 15:08:54,385] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-13 15:08:54,396] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-13 15:08:54,414] multiqc [DEBUG ] No samples found: cutadapt [2026-08-13 15:08:54,424] multiqc [DEBUG ] No samples found: flexbar [2026-08-13 15:08:54,432] multiqc [DEBUG ] No samples found: kaiju [2026-08-13 15:08:54,441] multiqc [DEBUG ] No samples found: kraken [2026-08-13 15:08:54,458] multiqc [DEBUG ] No samples found: malt [2026-08-13 15:08:54,468] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-13 15:08:54,474] multiqc [DEBUG ] No samples found: sickle [2026-08-13 15:08:54,491] multiqc [DEBUG ] No samples found: skewer [2026-08-13 15:08:54,499] multiqc [DEBUG ] No samples found: sortmerna [2026-08-13 15:08:54,506] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-13 15:08:54,512] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-13 15:08:54,535] multiqc [DEBUG ] No samples found: afterqc [2026-08-13 15:08:54,563] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,583] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,603] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,624] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,641] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,664] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,677] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,713] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,733] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,756] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,777] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,807] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,827] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 15:08:54,828] multiqc.modules.fastp.fastp [INFO ] Found 13 reports [2026-08-13 15:09:00,811] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2026-08-13 15:09:00,813] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-08-13 15:09:02,458] multiqc [DEBUG ] No samples found: pychopper [2026-08-13 15:09:02,462] multiqc [DEBUG ] No samples found: pycoqc [2026-08-13 15:09:02,467] multiqc [DEBUG ] No samples found: minionqc [2026-08-13 15:09:02,473] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-13 15:09:02,488] multiqc [DEBUG ] No samples found: clusterflow [2026-08-13 15:09:02,498] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-13 15:09:02,506] multiqc [DEBUG ] No samples found: bclconvert [2026-08-13 15:09:02,513] multiqc [DEBUG ] No samples found: interop [2026-08-13 15:09:02,521] multiqc [DEBUG ] No samples found: ivar [2026-08-13 15:09:02,526] multiqc [DEBUG ] No samples found: flash [2026-08-13 15:09:02,530] multiqc [DEBUG ] No samples found: seqyclean [2026-08-13 15:09:02,534] multiqc [DEBUG ] No samples found: optitype [2026-08-13 15:09:02,605] multiqc [INFO ] Compressing plot data [2026-08-13 15:09:04,262] multiqc [INFO ] Report : multiqc_report.html [2026-08-13 15:09:04,262] multiqc [INFO ] Data : multiqc_data [2026-08-13 15:09:04,262] multiqc [DEBUG ] Moving data file from '/scratch/tmpevlnikcy/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G263_RNAseq/Scripts/99_final_summary/G263_RNAseq_multiqc_report/multiqc_data' [2026-08-13 15:09:04,432] multiqc [INFO ] MultiQC complete