Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G263_M01_statistics_for_all_accepted_reads 35682902 0 4772586 0 0 0 0 0 35682902 0 100.0 nan 30910316 0 15455158 0 15455158 0 30910316 0 100.0 nan 30910316 0 0 0 0.0 nan 0 0 0 0 35682902 G263_M01_statistics_for_primary_reads 30910316 0 0 0 0 0 0 0 30910316 0 100.0 nan 30910316 0 15455158 0 15455158 0 30910316 0 100.0 nan 30910316 0 0 0 0.0 nan 0 0 0 0 30910316 G263_M01_statistics_for_primary_unique_reads 28495578 0 0 0 0 0 0 0 28495578 0 100.0 nan 28495578 0 14247789 0 14247789 0 28495578 0 100.0 nan 28495578 0 0 0 0.0 nan 0 0 0 0 28495578 G263_M02_statistics_for_all_accepted_reads 39764198 0 5104610 0 0 0 0 0 39764198 0 100.0 nan 34659588 0 17329794 0 17329794 0 34659588 0 100.0 nan 34659588 0 0 0 0.0 nan 0 0 0 0 39764198 G263_M02_statistics_for_primary_reads 34659588 0 0 0 0 0 0 0 34659588 0 100.0 nan 34659588 0 17329794 0 17329794 0 34659588 0 100.0 nan 34659588 0 0 0 0.0 nan 0 0 0 0 34659588 G263_M02_statistics_for_primary_unique_reads 32126956 0 0 0 0 0 0 0 32126956 0 100.0 nan 32126956 0 16063478 0 16063478 0 32126956 0 100.0 nan 32126956 0 0 0 0.0 nan 0 0 0 0 32126956 G263_M03_statistics_for_all_accepted_reads 42654166 0 5833658 0 0 0 0 0 42654166 0 100.0 nan 36820508 0 18410254 0 18410254 0 36820508 0 100.0 nan 36820508 0 0 0 0.0 nan 0 0 0 0 42654166 G263_M03_statistics_for_primary_reads 36820508 0 0 0 0 0 0 0 36820508 0 100.0 nan 36820508 0 18410254 0 18410254 0 36820508 0 100.0 nan 36820508 0 0 0 0.0 nan 0 0 0 0 36820508 G263_M03_statistics_for_primary_unique_reads 33818760 0 0 0 0 0 0 0 33818760 0 100.0 nan 33818760 0 16909380 0 16909380 0 33818760 0 100.0 nan 33818760 0 0 0 0.0 nan 0 0 0 0 33818760 G263_M04_statistics_for_all_accepted_reads 40266030 0 5264754 0 0 0 0 0 40266030 0 100.0 nan 35001276 0 17500638 0 17500638 0 35001276 0 100.0 nan 35001276 0 0 0 0.0 nan 0 0 0 0 40266030 G263_M04_statistics_for_primary_reads 35001276 0 0 0 0 0 0 0 35001276 0 100.0 nan 35001276 0 17500638 0 17500638 0 35001276 0 100.0 nan 35001276 0 0 0 0.0 nan 0 0 0 0 35001276 G263_M04_statistics_for_primary_unique_reads 32224128 0 0 0 0 0 0 0 32224128 0 100.0 nan 32224128 0 16112064 0 16112064 0 32224128 0 100.0 nan 32224128 0 0 0 0.0 nan 0 0 0 0 32224128 G263_M05_statistics_for_all_accepted_reads 57644970 0 6577640 0 0 0 0 0 57644970 0 100.0 nan 51067330 0 25533665 0 25533665 0 51067330 0 100.0 nan 51067330 0 0 0 0.0 nan 0 0 0 0 57644970 G263_M05_statistics_for_primary_reads 51067330 0 0 0 0 0 0 0 51067330 0 100.0 nan 51067330 0 25533665 0 25533665 0 51067330 0 100.0 nan 51067330 0 0 0 0.0 nan 0 0 0 0 51067330 G263_M05_statistics_for_primary_unique_reads 47656518 0 0 0 0 0 0 0 47656518 0 100.0 nan 47656518 0 23828259 0 23828259 0 47656518 0 100.0 nan 47656518 0 0 0 0.0 nan 0 0 0 0 47656518 G263_M06_statistics_for_all_accepted_reads 56700624 0 7319620 0 0 0 0 0 56700624 0 100.0 nan 49381004 0 24690502 0 24690502 0 49381004 0 100.0 nan 49381004 0 0 0 0.0 nan 0 0 0 0 56700624 G263_M06_statistics_for_primary_reads 49381004 0 0 0 0 0 0 0 49381004 0 100.0 nan 49381004 0 24690502 0 24690502 0 49381004 0 100.0 nan 49381004 0 0 0 0.0 nan 0 0 0 0 49381004 G263_M06_statistics_for_primary_unique_reads 45566604 0 0 0 0 0 0 0 45566604 0 100.0 nan 45566604 0 22783302 0 22783302 0 45566604 0 100.0 nan 45566604 0 0 0 0.0 nan 0 0 0 0 45566604 G263_M07_statistics_for_all_accepted_reads 42051114 0 5465782 0 0 0 0 0 42051114 0 100.0 nan 36585332 0 18292666 0 18292666 0 36585332 0 100.0 nan 36585332 0 0 0 0.0 nan 0 0 0 0 42051114 G263_M07_statistics_for_primary_reads 36585332 0 0 0 0 0 0 0 36585332 0 100.0 nan 36585332 0 18292666 0 18292666 0 36585332 0 100.0 nan 36585332 0 0 0 0.0 nan 0 0 0 0 36585332 G263_M07_statistics_for_primary_unique_reads 33682734 0 0 0 0 0 0 0 33682734 0 100.0 nan 33682734 0 16841367 0 16841367 0 33682734 0 100.0 nan 33682734 0 0 0 0.0 nan 0 0 0 0 33682734 G263_M08_statistics_for_all_accepted_reads 30684580 0 3610970 0 0 0 0 0 30684580 0 100.0 nan 27073610 0 13536805 0 13536805 0 27073610 0 100.0 nan 27073610 0 0 0 0.0 nan 0 0 0 0 30684580 G263_M08_statistics_for_primary_reads 27073610 0 0 0 0 0 0 0 27073610 0 100.0 nan 27073610 0 13536805 0 13536805 0 27073610 0 100.0 nan 27073610 0 0 0 0.0 nan 0 0 0 0 27073610 G263_M08_statistics_for_primary_unique_reads 24928096 0 0 0 0 0 0 0 24928096 0 100.0 nan 24928096 0 12464048 0 12464048 0 24928096 0 100.0 nan 24928096 0 0 0 0.0 nan 0 0 0 0 24928096 G263_M09_statistics_for_all_accepted_reads 38156474 0 4961088 0 0 0 0 0 38156474 0 100.0 nan 33195386 0 16597693 0 16597693 0 33195386 0 100.0 nan 33195386 0 0 0 0.0 nan 0 0 0 0 38156474 G263_M09_statistics_for_primary_reads 33195386 0 0 0 0 0 0 0 33195386 0 100.0 nan 33195386 0 16597693 0 16597693 0 33195386 0 100.0 nan 33195386 0 0 0 0.0 nan 0 0 0 0 33195386 G263_M09_statistics_for_primary_unique_reads 30812570 0 0 0 0 0 0 0 30812570 0 100.0 nan 30812570 0 15406285 0 15406285 0 30812570 0 100.0 nan 30812570 0 0 0 0.0 nan 0 0 0 0 30812570 G263_M10_statistics_for_all_accepted_reads 41609924 0 6055224 0 0 0 0 0 41609924 0 100.0 nan 35554700 0 17777350 0 17777350 0 35554700 0 100.0 nan 35554700 0 0 0 0.0 nan 0 0 0 0 41609924 G263_M10_statistics_for_primary_reads 35554700 0 0 0 0 0 0 0 35554700 0 100.0 nan 35554700 0 17777350 0 17777350 0 35554700 0 100.0 nan 35554700 0 0 0 0.0 nan 0 0 0 0 35554700 G263_M10_statistics_for_primary_unique_reads 32622098 0 0 0 0 0 0 0 32622098 0 100.0 nan 32622098 0 16311049 0 16311049 0 32622098 0 100.0 nan 32622098 0 0 0 0.0 nan 0 0 0 0 32622098 G263_M11_statistics_for_all_accepted_reads 42515114 0 4383624 0 0 0 0 0 42515114 0 100.0 nan 38131490 0 19065745 0 19065745 0 38131490 0 100.0 nan 38131490 0 0 0 0.0 nan 0 0 0 0 42515114 G263_M11_statistics_for_primary_reads 38131490 0 0 0 0 0 0 0 38131490 0 100.0 nan 38131490 0 19065745 0 19065745 0 38131490 0 100.0 nan 38131490 0 0 0 0.0 nan 0 0 0 0 38131490 G263_M11_statistics_for_primary_unique_reads 35529956 0 0 0 0 0 0 0 35529956 0 100.0 nan 35529956 0 17764978 0 17764978 0 35529956 0 100.0 nan 35529956 0 0 0 0.0 nan 0 0 0 0 35529956 G263_M12_statistics_for_all_accepted_reads 52800304 0 5923772 0 0 0 0 0 52800304 0 100.0 nan 46876532 0 23438266 0 23438266 0 46876532 0 100.0 nan 46876532 0 0 0 0.0 nan 0 0 0 0 52800304 G263_M12_statistics_for_primary_reads 46876532 0 0 0 0 0 0 0 46876532 0 100.0 nan 46876532 0 23438266 0 23438266 0 46876532 0 100.0 nan 46876532 0 0 0 0.0 nan 0 0 0 0 46876532 G263_M12_statistics_for_primary_unique_reads 43584002 0 0 0 0 0 0 0 43584002 0 100.0 nan 43584002 0 21792001 0 21792001 0 43584002 0 100.0 nan 43584002 0 0 0 0.0 nan 0 0 0 0 43584002 G263_M13_statistics_for_all_accepted_reads 59190524 0 5705086 0 0 0 0 0 59190524 0 100.0 nan 53485438 0 26742719 0 26742719 0 53485438 0 100.0 nan 53485438 0 0 0 0.0 nan 0 0 0 0 59190524 G263_M13_statistics_for_primary_reads 53485438 0 0 0 0 0 0 0 53485438 0 100.0 nan 53485438 0 26742719 0 26742719 0 53485438 0 100.0 nan 53485438 0 0 0 0.0 nan 0 0 0 0 53485438 G263_M13_statistics_for_primary_unique_reads 50105570 0 0 0 0 0 0 0 50105570 0 100.0 nan 50105570 0 25052785 0 25052785 0 50105570 0 100.0 nan 50105570 0 0 0 0.0 nan 0 0 0 0 50105570