[2024-06-10 17:33:35,008] multiqc [DEBUG ] This is MultiQC v1.12 [2024-06-10 17:33:35,009] multiqc [DEBUG ] No MultiQC config found: /usr/lib/python3.8/site-packages/multiqc_config.yaml [2024-06-10 17:33:35,009] multiqc [DEBUG ] No MultiQC config found: /usr3/graduate/dengel/.multiqc_config.yaml [2024-06-10 17:33:35,013] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-06-10 17:33:35,015] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2024-06-10 17:33:35,015] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2024-06-10 17:33:35,015] multiqc [DEBUG ] Command used: /usr/bin/multiqc --no-ansi -c /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/SAMPLES /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/03_FASTQC/ /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/06_CollectMetrics/ [2024-06-10 17:33:36,018] multiqc [WARNING] MultiQC Version v1.22.2 now available! [2024-06-10 17:33:36,018] multiqc [DEBUG ] Command : /usr/bin/multiqc --no-ansi -c /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/SAMPLES /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/03_FASTQC/ /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/06_CollectMetrics/ [2024-06-10 17:33:36,018] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/14_final_summary/GSE104743_PCN_TCPOBOP_ARosado_Pipe_multiqc_report [2024-06-10 17:33:36,018] multiqc [DEBUG ] Template : default [2024-06-10 17:33:36,019] multiqc [DEBUG ] Running Python 3.8.1 (default, Dec 26 2019, 14:42:08) [GCC 9.2.0] [2024-06-10 17:33:36,020] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2024-06-10 17:33:36,020] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpity4lx92 [2024-06-10 17:33:36,159] multiqc [INFO ] Search path : /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/SAMPLES [2024-06-10 17:33:36,159] multiqc [INFO ] Search path : /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/03_FASTQC [2024-06-10 17:33:36,159] multiqc [INFO ] Search path : /projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/06_CollectMetrics [2024-06-10 17:33:36,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150368_2.fastq.gz [2024-06-10 17:33:36,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150368_1.fastq.gz [2024-06-10 17:33:36,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:36,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:36,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:36,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:36,471] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:36,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_TCPO3_hist.pdf [2024-06-10 17:33:36,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,521] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:36,556] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,342] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,353] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:38,388] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:39,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO3_featureCounts.out [2024-06-10 17:33:40,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:40,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:40,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO3_metrics [2024-06-10 17:33:40,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150365_1.fastq.gz [2024-06-10 17:33:40,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150365_2.fastq.gz [2024-06-10 17:33:40,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:40,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:40,320] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:40,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:40,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:40,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_PCN3_hist.pdf [2024-06-10 17:33:40,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,406] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:40,442] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,062] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,216] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:42,251] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:43,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN3_featureCounts.out [2024-06-10 17:33:44,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:44,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:44,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN3_metrics [2024-06-10 17:33:44,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150362_1.fastq.gz [2024-06-10 17:33:44,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150362_2.fastq.gz [2024-06-10 17:33:44,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:44,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:44,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:44,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:44,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:44,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_Ctrl3_hist.pdf [2024-06-10 17:33:44,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,312] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,312] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,313] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,313] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,313] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,313] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,314] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:44,357] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,166] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,174] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:46,209] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:47,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl3_featureCounts.out [2024-06-10 17:33:47,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:47,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:47,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl3_metrics [2024-06-10 17:33:48,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150361_1.fastq.gz [2024-06-10 17:33:48,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150361_2.fastq.gz [2024-06-10 17:33:48,128] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_Ctrl2_hist.pdf [2024-06-10 17:33:48,153] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:48,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:48,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:48,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:48,190] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:48,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,261] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:48,296] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:49,938] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,100] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:50,134] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:51,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl2_featureCounts.out [2024-06-10 17:33:51,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:51,864] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:51,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl2_metrics [2024-06-10 17:33:51,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150360_1.fastq.gz [2024-06-10 17:33:51,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150360_2.fastq.gz [2024-06-10 17:33:52,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:52,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:52,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:52,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:52,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:52,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_Ctrl1_hist.pdf [2024-06-10 17:33:52,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:52,247] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:53,902] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,067] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,067] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,067] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,068] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,068] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,068] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:54,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:55,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_Ctrl1_featureCounts.out [2024-06-10 17:33:55,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:55,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:55,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_Ctrl1_metrics [2024-06-10 17:33:55,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150363_1.fastq.gz [2024-06-10 17:33:55,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150363_2.fastq.gz [2024-06-10 17:33:56,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_PCN1_hist.pdf [2024-06-10 17:33:56,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:56,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:56,034] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:56,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:56,058] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:56,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,126] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:56,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,766] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,949] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:57,984] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:59,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN1_featureCounts.out [2024-06-10 17:33:59,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:59,732] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:59,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN1_metrics [2024-06-10 17:33:59,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150364_2.fastq.gz [2024-06-10 17:33:59,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150364_1.fastq.gz [2024-06-10 17:33:59,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:33:59,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:33:59,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:33:59,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:33:59,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:33:59,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_PCN2_hist.pdf [2024-06-10 17:34:00,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,013] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:00,049] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,666] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,825] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,831] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,831] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,831] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,831] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:01,867] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:03,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_PCN2_featureCounts.out [2024-06-10 17:34:03,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:34:03,571] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:34:03,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_PCN2_metrics [2024-06-10 17:34:03,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150366_2.fastq.gz [2024-06-10 17:34:03,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150366_1.fastq.gz [2024-06-10 17:34:03,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_TCPO1_hist.pdf [2024-06-10 17:34:03,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:03,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:03,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:03,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:03,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:03,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:03,907] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,518] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,683] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:05,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:07,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO1_featureCounts.out [2024-06-10 17:34:07,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:07,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:07,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO1_metrics [2024-06-10 17:34:07,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150367_1.fastq.gz [2024-06-10 17:34:07,532] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR6150367_2.fastq.gz [2024-06-10 17:34:07,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: XB33_TCPO2_hist.pdf [2024-06-10 17:34:07,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:07,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:07,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:07,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:07,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:07,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,747] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:07,782] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,555] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:09,591] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:11,222] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: XB33_TCPO2_featureCounts.out [2024-06-10 17:34:11,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:11,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:11,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: XB33_TCPO2_metrics [2024-06-10 17:34:11,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-06-10 17:34:11,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-06-10 17:34:11,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2024-06-10 17:34:11,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-06-10 17:34:11,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-06-10 17:34:11,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2024-06-10 17:34:11,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-06-10 17:34:11,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2024-06-10 17:34:11,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2024-06-10 17:34:11,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2024-06-10 17:34:11,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2024-06-10 17:34:11,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2024-06-10 17:34:11,497] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2024-06-10 17:34:11,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-06-10 17:34:11,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2024-06-10 17:34:11,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7914345 [2024-06-10 17:34:11,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7914345 [2024-06-10 17:34:11,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7914345 [2024-06-10 17:34:11,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7914345 [2024-06-10 17:34:11,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7914345 [2024-06-10 17:34:11,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl3.o7914342 [2024-06-10 17:34:11,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl3.o7914342 [2024-06-10 17:34:11,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl3.o7914342 [2024-06-10 17:34:11,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl3.o7914342 [2024-06-10 17:34:11,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl3.o7914342 [2024-06-10 17:34:11,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7914344 [2024-06-10 17:34:11,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7914344 [2024-06-10 17:34:11,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7914344 [2024-06-10 17:34:11,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7914344 [2024-06-10 17:34:11,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7914344 [2024-06-10 17:34:11,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7914343 [2024-06-10 17:34:11,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7914343 [2024-06-10 17:34:11,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7914343 [2024-06-10 17:34:11,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7914343 [2024-06-10 17:34:11,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7914343 [2024-06-10 17:34:11,652] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7914348 [2024-06-10 17:34:11,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7914348 [2024-06-10 17:34:11,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7914348 [2024-06-10 17:34:11,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7914348 [2024-06-10 17:34:11,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7914348 [2024-06-10 17:34:11,705] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl2.o7914341 [2024-06-10 17:34:11,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl2.o7914341 [2024-06-10 17:34:11,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl2.o7914341 [2024-06-10 17:34:11,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl2.o7914341 [2024-06-10 17:34:11,722] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl2.o7914341 [2024-06-10 17:34:11,728] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO2.o7914347 [2024-06-10 17:34:11,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO2.o7914347 [2024-06-10 17:34:11,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO2.o7914347 [2024-06-10 17:34:11,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO2.o7914347 [2024-06-10 17:34:11,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO2.o7914347 [2024-06-10 17:34:11,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7914346 [2024-06-10 17:34:11,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7914346 [2024-06-10 17:34:11,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7914346 [2024-06-10 17:34:11,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7914346 [2024-06-10 17:34:11,769] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7914346 [2024-06-10 17:34:11,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7914340 [2024-06-10 17:34:11,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7914340 [2024-06-10 17:34:11,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7914340 [2024-06-10 17:34:11,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7914340 [2024-06-10 17:34:11,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_03_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7914340 [2024-06-10 17:34:12,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2024-06-10 17:34:12,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2024-06-10 17:34:12,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2024-06-10 17:34:12,066] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2024-06-10 17:34:12,067] 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[2024-06-10 17:34:16,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7915924 [2024-06-10 17:34:16,558] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7915924 [2024-06-10 17:34:16,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7915924 [2024-06-10 17:34:16,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN1.o7915924 [2024-06-10 17:34:16,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl3.o7915923 [2024-06-10 17:34:16,588] multiqc [DEBUG ] File ignored by hicexplorer 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17:34:16,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7915926 [2024-06-10 17:34:16,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7915926 [2024-06-10 17:34:16,680] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN3.o7915926 [2024-06-10 17:34:16,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7915927 [2024-06-10 17:34:16,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7915927 [2024-06-10 17:34:16,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7915927 [2024-06-10 17:34:16,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7915927 [2024-06-10 17:34:16,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO1.o7915927 [2024-06-10 17:34:16,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7915921 [2024-06-10 17:34:16,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7915921 [2024-06-10 17:34:16,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7915921 [2024-06-10 17:34:16,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7915921 [2024-06-10 17:34:16,748] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_Ctrl1.o7915921 [2024-06-10 17:34:16,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7915929 [2024-06-10 17:34:16,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7915929 [2024-06-10 17:34:16,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7915929 [2024-06-10 17:34:16,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7915929 [2024-06-10 17:34:16,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_TCPO3.o7915929 [2024-06-10 17:34:16,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7915925 [2024-06-10 17:34:16,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7915925 [2024-06-10 17:34:16,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7915925 [2024-06-10 17:34:16,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7915925 [2024-06-10 17:34:16,807] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE104743_PCN_TCPOBOP_ARosado_Pipe_XB33_PCN2.o7915925 [2024-06-10 17:34:16,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2024-06-10 17:34:16,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:16,871] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:18,171] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2024-06-10 17:34:18,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-06-10 17:34:18,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-06-10 17:34:18,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-06-10 17:34:18,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-06-10 17:34:18,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2024-06-10 17:34:18,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-06-10 17:34:18,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-06-10 17:34:18,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-06-10 17:34:18,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-06-10 17:34:18,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2024-06-10 17:34:19,140] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.2 [2024-06-10 17:34:19,142] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.2 [2024-06-10 17:34:19,157] multiqc.modules.rseqc.rseqc [INFO ] Found 9 infer_experiment reports [2024-06-10 17:34:19,163] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_TCPO3_sorted [2024-06-10 17:34:19,164] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_PCN3_sorted [2024-06-10 17:34:19,165] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_Ctrl3_sorted [2024-06-10 17:34:19,166] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_Ctrl2_sorted [2024-06-10 17:34:19,167] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_Ctrl1_sorted [2024-06-10 17:34:19,168] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_PCN1_sorted [2024-06-10 17:34:19,168] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_PCN2_sorted [2024-06-10 17:34:19,169] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_TCPO1_sorted [2024-06-10 17:34:19,170] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: XB33_TCPO2_sorted [2024-06-10 17:34:19,170] multiqc.modules.featureCounts.feature_counts [INFO ] Found 9 reports [2024-06-10 17:34:19,311] multiqc.modules.picard.picard [INFO ] Found 9 InsertSizeMetrics reports [2024-06-10 17:34:19,325] multiqc.modules.picard.picard [INFO ] Found 9 RnaSeqMetrics reports [2024-06-10 17:34:19,350] multiqc.modules.samtools.samtools [INFO ] Found 27 flagstat reports [2024-06-10 17:34:19,366] multiqc.modules.star.star [INFO ] Found 9 reports [2024-06-10 17:34:19,403] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,422] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,473] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,490] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,510] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,534] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,558] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,581] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,606] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2024-06-10 17:34:19,608] multiqc.modules.fastp.fastp [INFO ] Found 9 reports [2024-06-10 17:34:20,605] multiqc.modules.fastqc.fastqc [INFO ] Found 18 reports [2024-06-10 17:34:20,923] multiqc [INFO ] Compressing plot data [2024-06-10 17:34:22,186] multiqc [INFO ] Report : multiqc_report.html [2024-06-10 17:34:22,186] multiqc [INFO ] Data : multiqc_data [2024-06-10 17:34:22,186] multiqc [DEBUG ] Moving data file from '/scratch/tmpity4lx92/multiqc_data' to '/projectnb/wax-dk/david/GSE104743_PCN_TCPOBOP_ARosado_Pipe/Scripts/14_final_summary/GSE104743_PCN_TCPOBOP_ARosado_Pipe_multiqc_report/multiqc_data' [2024-06-10 17:34:22,326] multiqc [INFO ] MultiQC complete