[2023-11-14 23:26:26,178] multiqc [DEBUG ] This is MultiQC v1.11 [2023-11-14 23:26:26,178] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2023-11-14 23:26:26,178] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-11-14 23:26:26,178] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-14 23:26:26,179] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2023-11-14 23:26:26,179] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-11-14 23:26:26,179] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/06_CollectMetrics/ [2023-11-14 23:26:26,364] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-14 23:26:26,364] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/06_CollectMetrics/ [2023-11-14 23:26:26,364] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/14_final_summary/multiqc_report [2023-11-14 23:26:26,364] multiqc [DEBUG ] Template : default [2023-11-14 23:26:26,365] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2023-11-14 23:26:26,365] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2023-11-14 23:26:26,366] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp6qadir05 [2023-11-14 23:26:26,430] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/SAMPLES [2023-11-14 23:26:26,430] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/03_FASTQC [2023-11-14 23:26:26,430] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/06_CollectMetrics [2023-11-14 23:26:26,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347588_pass.fastq.gz [2023-11-14 23:26:26,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M7_primary_unique.bam [2023-11-14 23:26:26,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M7_primary_unique.bam.bai [2023-11-14 23:26:26,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,737] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,737] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,738] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,738] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:26,759] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:27,778] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M7_featureCounts.out [2023-11-14 23:26:28,728] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M7_metrics [2023-11-14 23:26:28,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M7_metrics [2023-11-14 23:26:28,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M7_metrics [2023-11-14 23:26:28,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347599_pass.fastq.gz [2023-11-14 23:26:28,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M18_primary_unique.bam [2023-11-14 23:26:28,836] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M18_primary_unique.bam.bai [2023-11-14 23:26:28,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,898] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:28,920] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,898] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:29,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M18_featureCounts.out [2023-11-14 23:26:30,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M18_metrics [2023-11-14 23:26:30,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M18_metrics [2023-11-14 23:26:30,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M18_metrics [2023-11-14 23:26:30,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347593_pass.fastq.gz [2023-11-14 23:26:30,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M12_primary_unique.bam.bai [2023-11-14 23:26:30,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M12_primary_unique.bam [2023-11-14 23:26:30,990] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:30,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:30,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:30,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:30,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:30,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,000] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:31,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,019] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,020] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:32,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M12_featureCounts.out [2023-11-14 23:26:33,004] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M12_metrics [2023-11-14 23:26:33,006] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M12_metrics [2023-11-14 23:26:33,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M12_metrics [2023-11-14 23:26:33,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347594_pass.fastq.gz [2023-11-14 23:26:33,091] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M13_primary_unique.bam.bai [2023-11-14 23:26:33,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M13_primary_unique.bam [2023-11-14 23:26:33,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,172] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,172] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,172] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,172] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:33,194] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,190] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,191] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,196] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,196] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,197] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,197] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:34,221] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M13_featureCounts.out [2023-11-14 23:26:35,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M13_metrics [2023-11-14 23:26:35,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M13_metrics [2023-11-14 23:26:35,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M13_metrics [2023-11-14 23:26:35,200] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347590_pass.fastq.gz [2023-11-14 23:26:35,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M9_primary_unique.bam [2023-11-14 23:26:35,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M9_primary_unique.bam.bai [2023-11-14 23:26:35,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,298] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,302] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,303] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:35,324] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,285] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,289] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,293] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:36,314] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M9_featureCounts.out [2023-11-14 23:26:37,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M9_metrics [2023-11-14 23:26:37,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M9_metrics [2023-11-14 23:26:37,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M9_metrics [2023-11-14 23:26:37,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347595_pass.fastq.gz [2023-11-14 23:26:37,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M14_primary_unique.bam.bai [2023-11-14 23:26:37,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M14_primary_unique.bam [2023-11-14 23:26:37,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:37,449] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:38,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M14_featureCounts.out [2023-11-14 23:26:39,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M14_metrics [2023-11-14 23:26:39,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M14_metrics [2023-11-14 23:26:39,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M14_metrics [2023-11-14 23:26:39,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347591_pass.fastq.gz [2023-11-14 23:26:39,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M10_primary_unique.bam.bai [2023-11-14 23:26:39,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M10_primary_unique.bam [2023-11-14 23:26:39,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,493] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,493] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,499] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:39,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,517] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,517] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,521] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,521] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:40,543] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M10_featureCounts.out [2023-11-14 23:26:41,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M10_metrics [2023-11-14 23:26:41,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M10_metrics [2023-11-14 23:26:41,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M10_metrics [2023-11-14 23:26:41,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347605_pass.fastq.gz [2023-11-14 23:26:41,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M24_primary_unique.bam.bai [2023-11-14 23:26:41,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M24_primary_unique.bam [2023-11-14 23:26:41,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,612] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:41,640] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,606] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,606] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,607] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,607] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,607] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,607] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:42,629] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M24_featureCounts.out [2023-11-14 23:26:43,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M24_metrics [2023-11-14 23:26:43,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M24_metrics [2023-11-14 23:26:43,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M24_metrics [2023-11-14 23:26:43,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347601_pass.fastq.gz [2023-11-14 23:26:43,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M20_primary_unique.bam.bai [2023-11-14 23:26:43,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M20_primary_unique.bam [2023-11-14 23:26:43,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,715] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,715] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,720] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,721] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:43,742] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,720] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,732] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,732] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:44,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M20_featureCounts.out [2023-11-14 23:26:45,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M20_metrics [2023-11-14 23:26:45,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M20_metrics [2023-11-14 23:26:45,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M20_metrics [2023-11-14 23:26:45,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347597_pass.fastq.gz [2023-11-14 23:26:45,800] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M16_primary_unique.bam.bai [2023-11-14 23:26:45,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M16_primary_unique.bam [2023-11-14 23:26:45,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,856] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,861] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:45,882] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,866] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:46,889] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M16_featureCounts.out [2023-11-14 23:26:47,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M16_metrics [2023-11-14 23:26:47,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M16_metrics [2023-11-14 23:26:47,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M16_metrics [2023-11-14 23:26:47,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347586_pass.fastq.gz [2023-11-14 23:26:47,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M5_primary_unique.bam [2023-11-14 23:26:47,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M5_primary_unique.bam.bai [2023-11-14 23:26:47,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,970] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:47,991] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,918] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,918] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,923] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,924] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:48,946] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M5_featureCounts.out [2023-11-14 23:26:49,860] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M5_metrics [2023-11-14 23:26:49,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M5_metrics [2023-11-14 23:26:49,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M5_metrics [2023-11-14 23:26:49,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347584_pass.fastq.gz [2023-11-14 23:26:49,955] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M3_primary_unique.bam.bai [2023-11-14 23:26:49,985] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M3_primary_unique.bam [2023-11-14 23:26:50,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,028] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,033] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,034] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:50,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M3_featureCounts.out [2023-11-14 23:26:51,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M3_metrics [2023-11-14 23:26:51,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M3_metrics [2023-11-14 23:26:51,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M3_metrics [2023-11-14 23:26:51,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347602_pass.fastq.gz [2023-11-14 23:26:51,959] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M21_primary_unique.bam.bai [2023-11-14 23:26:51,991] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M21_primary_unique.bam [2023-11-14 23:26:52,040] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,042] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,047] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:52,070] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,048] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,056] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,077] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M21_featureCounts.out [2023-11-14 23:26:53,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M21_metrics [2023-11-14 23:26:53,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M21_metrics [2023-11-14 23:26:53,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M21_metrics [2023-11-14 23:26:54,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347592_pass.fastq.gz [2023-11-14 23:26:54,030] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M11_primary_unique.bam [2023-11-14 23:26:54,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M11_primary_unique.bam.bai [2023-11-14 23:26:54,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,129] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,134] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:54,155] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,156] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,171] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:55,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M11_featureCounts.out [2023-11-14 23:26:56,133] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M11_metrics [2023-11-14 23:26:56,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M11_metrics [2023-11-14 23:26:56,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M11_metrics [2023-11-14 23:26:56,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347600_pass.fastq.gz [2023-11-14 23:26:56,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M19_primary_unique.bam [2023-11-14 23:26:56,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M19_primary_unique.bam.bai [2023-11-14 23:26:56,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,309] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:56,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,349] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,349] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,349] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:57,376] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M19_featureCounts.out [2023-11-14 23:26:58,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M19_metrics [2023-11-14 23:26:58,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M19_metrics [2023-11-14 23:26:58,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M19_metrics [2023-11-14 23:26:58,357] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347596_pass.fastq.gz [2023-11-14 23:26:58,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M15_primary_unique.bam [2023-11-14 23:26:58,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M15_primary_unique.bam.bai [2023-11-14 23:26:58,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,488] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,489] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:58,510] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,487] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:26:59,509] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M15_featureCounts.out [2023-11-14 23:27:00,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M15_metrics [2023-11-14 23:27:00,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M15_metrics [2023-11-14 23:27:00,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M15_metrics [2023-11-14 23:27:00,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347598_pass.fastq.gz [2023-11-14 23:27:00,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M17_primary_unique.bam [2023-11-14 23:27:00,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M17_primary_unique.bam.bai [2023-11-14 23:27:00,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,611] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:00,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,613] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,619] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:01,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M17_featureCounts.out [2023-11-14 23:27:02,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M17_metrics [2023-11-14 23:27:02,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M17_metrics [2023-11-14 23:27:02,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M17_metrics [2023-11-14 23:27:02,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347583_pass.fastq.gz [2023-11-14 23:27:02,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M2_primary_unique.bam [2023-11-14 23:27:02,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M2_primary_unique.bam.bai [2023-11-14 23:27:02,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,738] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:02,760] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,679] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,683] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,683] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:03,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M2_featureCounts.out [2023-11-14 23:27:04,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M2_metrics [2023-11-14 23:27:04,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M2_metrics [2023-11-14 23:27:04,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M2_metrics [2023-11-14 23:27:04,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347603_pass.fastq.gz [2023-11-14 23:27:04,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M22_primary_unique.bam.bai [2023-11-14 23:27:04,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M22_primary_unique.bam [2023-11-14 23:27:04,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:04,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:05,788] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M22_featureCounts.out [2023-11-14 23:27:06,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M22_metrics [2023-11-14 23:27:06,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M22_metrics [2023-11-14 23:27:06,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M22_metrics [2023-11-14 23:27:06,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347585_pass.fastq.gz [2023-11-14 23:27:06,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M4_primary_unique.bam [2023-11-14 23:27:06,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M4_primary_unique.bam.bai [2023-11-14 23:27:06,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,871] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,871] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:06,896] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:07,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M4_featureCounts.out [2023-11-14 23:27:08,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M4_metrics [2023-11-14 23:27:08,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M4_metrics [2023-11-14 23:27:08,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M4_metrics [2023-11-14 23:27:08,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347587_pass.fastq.gz [2023-11-14 23:27:08,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M6_primary_unique.bam.bai [2023-11-14 23:27:08,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M6_primary_unique.bam [2023-11-14 23:27:08,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,984] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,990] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,990] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,990] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:08,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:09,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:09,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:09,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,004] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,026] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M6_featureCounts.out [2023-11-14 23:27:10,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M6_metrics [2023-11-14 23:27:10,969] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M6_metrics [2023-11-14 23:27:10,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M6_metrics [2023-11-14 23:27:11,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347582_pass.fastq.gz [2023-11-14 23:27:11,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M1_primary_unique.bam.bai [2023-11-14 23:27:11,089] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M1_primary_unique.bam [2023-11-14 23:27:11,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,142] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,146] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,146] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,146] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,147] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,147] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,147] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,147] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:11,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,145] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,145] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,145] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,145] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,145] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,146] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,146] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,146] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:12,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M1_featureCounts.out [2023-11-14 23:27:13,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M1_metrics [2023-11-14 23:27:13,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M1_metrics [2023-11-14 23:27:13,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M1_metrics [2023-11-14 23:27:13,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347604_pass.fastq.gz [2023-11-14 23:27:13,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M23_primary_unique.bam.bai [2023-11-14 23:27:13,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M23_primary_unique.bam [2023-11-14 23:27:13,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,293] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:13,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:14,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:14,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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23:27:14,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:14,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:14,268] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:14,268] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:14,292] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M23_featureCounts.out [2023-11-14 23:27:15,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M23_metrics [2023-11-14 23:27:15,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M23_metrics [2023-11-14 23:27:15,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M23_metrics [2023-11-14 23:27:15,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM3347589_pass.fastq.gz [2023-11-14 23:27:15,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M8_primary_unique.bam [2023-11-14 23:27:15,300] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE118787_M8_primary_unique.bam.bai [2023-11-14 23:27:15,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,347] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:15,375] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:16,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:16,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE118787_M8_featureCounts.out [2023-11-14 23:27:16,360] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE118787_M8_metrics [2023-11-14 23:27:17,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:27:17,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:27:17,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:27:17,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:27:17,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:27:17,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:27:17,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:27:17,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:27:17,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:27:17,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:27:17,541] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:27:17,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:27:17,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:27:17,555] multiqc [DEBUG ] File ignored by 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] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM3347593_pass_fastqc.html [2023-11-14 23:27:18,907] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM3347593_pass_fastqc.html [2023-11-14 23:27:18,907] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM3347593_pass_fastqc.html [2023-11-14 23:27:18,907] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM3347593_pass_fastqc.html [2023-11-14 23:27:18,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM3347597_pass_fastqc.html [2023-11-14 23:27:19,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM3347597_pass_fastqc.html [2023-11-14 23:27:19,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM3347597_pass_fastqc.html [2023-11-14 23:27:19,005] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM3347597_pass_fastqc.html [2023-11-14 23:27:19,089] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM3347590_pass_fastqc.html [2023-11-14 23:27:19,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM3347590_pass_fastqc.html [2023-11-14 23:27:19,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM3347590_pass_fastqc.html [2023-11-14 23:27:19,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM3347590_pass_fastqc.html [2023-11-14 23:27:19,096] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern 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[2023-11-14 23:27:19,193] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM3347602_pass_fastqc.html [2023-11-14 23:27:19,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM3347602_pass_fastqc.html [2023-11-14 23:27:19,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM3347602_pass_fastqc.html [2023-11-14 23:27:19,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM3347602_pass_fastqc.html [2023-11-14 23:27:19,200] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM3347602_pass_fastqc.html [2023-11-14 23:27:19,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM3347602_pass_fastqc.html [2023-11-14 23:27:19,200] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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[2023-11-14 23:27:20,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM3347604_pass_fastqc.html [2023-11-14 23:27:20,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM3347604_pass_fastqc.html [2023-11-14 23:27:20,337] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM3347604_pass_fastqc.html [2023-11-14 23:27:20,337] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM3347604_pass_fastqc.html [2023-11-14 23:27:20,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM3347604_pass_fastqc.html [2023-11-14 23:27:20,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM3347604_pass_fastqc.html [2023-11-14 23:27:20,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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23:27:20,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM3347600_pass_fastqc.html [2023-11-14 23:27:20,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,558] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,563] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,564] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,564] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,564] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,564] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM3347584_pass_fastqc.html [2023-11-14 23:27:20,564] multiqc [DEBUG ] File ignored by 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Step_06_GSE118787_GSE118787_M22.o2556475 [2023-11-14 23:27:21,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M22.o2556475 [2023-11-14 23:27:21,709] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M22.o2556475 [2023-11-14 23:27:21,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M22.o2556475 [2023-11-14 23:27:21,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M22.o2556475 [2023-11-14 23:27:21,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M5.o2556458 [2023-11-14 23:27:21,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M5.o2556458 [2023-11-14 23:27:21,725] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M5.o2556458 [2023-11-14 23:27:21,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M5.o2556458 [2023-11-14 23:27:21,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M5.o2556458 [2023-11-14 23:27:21,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M10.o2556463 [2023-11-14 23:27:21,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M10.o2556463 [2023-11-14 23:27:21,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M10.o2556463 [2023-11-14 23:27:21,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M10.o2556463 [2023-11-14 23:27:21,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE118787_GSE118787_M10.o2556463 [2023-11-14 23:27:21,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,801] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,801] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:21,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:27:22,586] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:27:22,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:27:22,588] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:27:22,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:27:22,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:27:22,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:27:22,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:27:22,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:27:22,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:27:22,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:27:22,916] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 23:27:22,917] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 23:27:22,918] multiqc [DEBUG ] No samples found: custom_content [2023-11-14 23:27:22,921] multiqc [DEBUG ] No samples found: ccs [2023-11-14 23:27:22,923] multiqc [DEBUG ] No samples found: ngsderive [2023-11-14 23:27:22,926] multiqc [DEBUG ] No samples found: purple [2023-11-14 23:27:22,929] multiqc [DEBUG ] No samples found: conpair [2023-11-14 23:27:22,931] multiqc [DEBUG ] No samples found: lima [2023-11-14 23:27:22,934] multiqc [DEBUG ] No samples found: peddy [2023-11-14 23:27:22,937] multiqc [DEBUG ] No samples found: somalier [2023-11-14 23:27:22,940] multiqc [DEBUG ] No samples found: methylQA [2023-11-14 23:27:22,944] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2023-11-14 23:27:22,944] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2023-11-14 23:27:22,944] multiqc [DEBUG ] No samples found: mosdepth [2023-11-14 23:27:22,946] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-14 23:27:22,949] multiqc [DEBUG ] No samples found: qualimap [2023-11-14 23:27:22,951] multiqc [DEBUG ] No samples found: preseq [2023-11-14 23:27:22,954] multiqc [DEBUG ] No samples found: quast [2023-11-14 23:27:22,957] multiqc [DEBUG ] No samples found: qorts [2023-11-14 23:27:22,960] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-14 23:27:22,964] multiqc [DEBUG ] No samples found: rockhopper [2023-11-14 23:27:22,966] multiqc [DEBUG ] No samples found: rsem [2023-11-14 23:27:22,979] multiqc.modules.rseqc.rseqc [INFO ] Found 24 infer_experiment reports [2023-11-14 23:27:22,982] multiqc [DEBUG ] No samples found: busco [2023-11-14 23:27:22,985] multiqc [DEBUG ] No samples found: bustools [2023-11-14 23:27:22,988] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-14 23:27:22,991] multiqc [DEBUG ] No samples found: gffcompare [2023-11-14 23:27:22,994] multiqc [DEBUG ] No samples found: disambiguate [2023-11-14 23:27:22,997] multiqc [DEBUG ] No samples found: supernova [2023-11-14 23:27:23,003] multiqc [DEBUG ] No samples found: deeptools [2023-11-14 23:27:23,007] multiqc [DEBUG ] No samples found: sargasso [2023-11-14 23:27:23,009] multiqc [DEBUG ] No samples found: verifybamid [2023-11-14 23:27:23,012] multiqc [DEBUG ] No samples found: mirtrace [2023-11-14 23:27:23,015] multiqc [DEBUG ] No samples found: happy [2023-11-14 23:27:23,018] multiqc [DEBUG ] No samples found: mirtop [2023-11-14 23:27:23,020] multiqc [DEBUG ] No samples found: sambamba [2023-11-14 23:27:23,024] multiqc [DEBUG ] No samples found: homer [2023-11-14 23:27:23,026] multiqc [DEBUG ] No samples found: hops [2023-11-14 23:27:23,029] multiqc [DEBUG ] No samples found: macs2 [2023-11-14 23:27:23,031] multiqc [DEBUG ] No samples found: theta2 [2023-11-14 23:27:23,034] multiqc [DEBUG ] No samples found: snpeff [2023-11-14 23:27:23,037] multiqc [DEBUG ] No samples found: gatk [2023-11-14 23:27:23,040] multiqc [DEBUG ] No samples found: htseq [2023-11-14 23:27:23,043] multiqc [DEBUG ] No samples found: bcftools [2023-11-14 23:27:23,046] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M7_sorted [2023-11-14 23:27:23,046] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M18_sorted [2023-11-14 23:27:23,047] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M12_sorted [2023-11-14 23:27:23,047] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M13_sorted [2023-11-14 23:27:23,048] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M9_sorted [2023-11-14 23:27:23,048] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M14_sorted [2023-11-14 23:27:23,048] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M10_sorted [2023-11-14 23:27:23,049] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M24_sorted [2023-11-14 23:27:23,049] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M20_sorted [2023-11-14 23:27:23,050] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M16_sorted [2023-11-14 23:27:23,050] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M5_sorted [2023-11-14 23:27:23,051] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M3_sorted [2023-11-14 23:27:23,051] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M21_sorted [2023-11-14 23:27:23,052] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M11_sorted [2023-11-14 23:27:23,052] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M19_sorted [2023-11-14 23:27:23,053] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M15_sorted [2023-11-14 23:27:23,053] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M17_sorted [2023-11-14 23:27:23,053] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M2_sorted [2023-11-14 23:27:23,054] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M22_sorted [2023-11-14 23:27:23,054] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M4_sorted [2023-11-14 23:27:23,055] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M6_sorted [2023-11-14 23:27:23,055] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M1_sorted [2023-11-14 23:27:23,056] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M23_sorted [2023-11-14 23:27:23,056] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE118787_M8_sorted [2023-11-14 23:27:23,056] multiqc.modules.featureCounts.feature_counts [INFO ] Found 24 reports [2023-11-14 23:27:23,062] multiqc [DEBUG ] No samples found: fgbio [2023-11-14 23:27:23,068] multiqc [DEBUG ] No samples found: dragen [2023-11-14 23:27:23,072] multiqc [DEBUG ] No samples found: dedup [2023-11-14 23:27:23,075] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-14 23:27:23,089] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-14 23:27:23,092] multiqc [DEBUG ] No samples found: jcvi [2023-11-14 23:27:23,094] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-14 23:27:23,119] multiqc.modules.picard.picard [INFO ] Found 24 RnaSeqMetrics reports [2023-11-14 23:27:23,122] multiqc [DEBUG ] No samples found: vep [2023-11-14 23:27:23,125] multiqc [DEBUG ] No samples found: sentieon [2023-11-14 23:27:23,127] multiqc [DEBUG ] No samples found: prokka [2023-11-14 23:27:23,130] multiqc [DEBUG ] No samples found: qc3C [2023-11-14 23:27:23,133] multiqc [DEBUG ] No samples found: nanostat [2023-11-14 23:27:23,135] multiqc [DEBUG ] No samples found: samblaster [2023-11-14 23:27:23,163] multiqc.modules.samtools.samtools [INFO ] Found 72 flagstat reports [2023-11-14 23:27:23,166] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-14 23:27:23,169] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2023-11-14 23:27:23,172] multiqc [DEBUG ] No samples found: bamtools [2023-11-14 23:27:23,174] multiqc [DEBUG ] No samples found: jellyfish [2023-11-14 23:27:23,178] multiqc [DEBUG ] No samples found: vcftools [2023-11-14 23:27:23,181] multiqc [DEBUG ] No samples found: longranger [2023-11-14 23:27:23,183] multiqc [DEBUG ] No samples found: stacks [2023-11-14 23:27:23,186] multiqc [DEBUG ] No samples found: varscan2 [2023-11-14 23:27:23,190] multiqc [DEBUG ] No samples found: snippy [2023-11-14 23:27:23,197] multiqc [DEBUG ] No samples found: bbmap [2023-11-14 23:27:23,200] multiqc [DEBUG ] No samples found: bismark [2023-11-14 23:27:23,204] multiqc [DEBUG ] No samples found: biscuit [2023-11-14 23:27:23,207] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-14 23:27:23,210] multiqc [DEBUG ] No samples found: hicup [2023-11-14 23:27:23,213] multiqc [DEBUG ] No samples found: hicpro [2023-11-14 23:27:23,216] multiqc [DEBUG ] No samples found: salmon [2023-11-14 23:27:23,218] multiqc [DEBUG ] No samples found: kallisto [2023-11-14 23:27:23,221] multiqc [DEBUG ] No samples found: slamdunk [2023-11-14 23:27:23,241] multiqc.modules.star.star [INFO ] Found 24 reports [2023-11-14 23:27:23,248] multiqc [DEBUG ] No samples found: hisat2 [2023-11-14 23:27:23,252] multiqc [DEBUG ] No samples found: tophat [2023-11-14 23:27:23,255] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-14 23:27:23,258] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-14 23:27:23,261] multiqc [DEBUG ] No samples found: snpsplit [2023-11-14 23:27:23,264] multiqc [DEBUG ] No samples found: odgi [2023-11-14 23:27:23,266] multiqc [DEBUG ] No samples found: pangolin [2023-11-14 23:27:23,269] multiqc [DEBUG ] No samples found: kat [2023-11-14 23:27:23,271] multiqc [DEBUG ] No samples found: leehom [2023-11-14 23:27:23,274] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-14 23:27:23,277] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-14 23:27:23,280] multiqc [DEBUG ] No samples found: cutadapt [2023-11-14 23:27:23,282] multiqc [DEBUG ] No samples found: flexbar [2023-11-14 23:27:23,285] multiqc [DEBUG ] No samples found: kaiju [2023-11-14 23:27:23,288] multiqc [DEBUG ] No samples found: kraken [2023-11-14 23:27:23,291] multiqc [DEBUG ] No samples found: malt [2023-11-14 23:27:23,293] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-14 23:27:23,296] multiqc [DEBUG ] No samples found: sickle [2023-11-14 23:27:23,299] multiqc [DEBUG ] No samples found: skewer [2023-11-14 23:27:23,302] multiqc [DEBUG ] No samples found: sortmerna [2023-11-14 23:27:23,304] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-14 23:27:23,307] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-14 23:27:23,310] multiqc [DEBUG ] No samples found: afterqc [2023-11-14 23:27:23,312] multiqc [DEBUG ] No samples found: fastp [2023-11-14 23:27:24,051] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2023-11-14 23:27:24,321] multiqc [DEBUG ] No samples found: pychopper [2023-11-14 23:27:24,324] multiqc [DEBUG ] No samples found: pycoqc [2023-11-14 23:27:24,326] multiqc [DEBUG ] No samples found: minionqc [2023-11-14 23:27:24,329] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-14 23:27:24,332] multiqc [DEBUG ] No samples found: clusterflow [2023-11-14 23:27:24,335] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-14 23:27:24,338] multiqc [DEBUG ] No samples found: bclconvert [2023-11-14 23:27:24,341] multiqc [DEBUG ] No samples found: interop [2023-11-14 23:27:24,344] multiqc [DEBUG ] No samples found: ivar [2023-11-14 23:27:24,346] multiqc [DEBUG ] No samples found: flash [2023-11-14 23:27:24,349] multiqc [DEBUG ] No samples found: seqyclean [2023-11-14 23:27:24,352] multiqc [DEBUG ] No samples found: optitype [2023-11-14 23:27:24,421] multiqc [INFO ] Compressing plot data [2023-11-14 23:27:24,772] multiqc [INFO ] Report : multiqc_report.html [2023-11-14 23:27:24,772] multiqc [INFO ] Data : multiqc_data [2023-11-14 23:27:24,772] multiqc [DEBUG ] Moving data file from '/scratch/tmp6qadir05/multiqc_data' to '/projectnb/wax-dk/max/RK_grant_proposal/GSE118787/Scripts/14_final_summary/multiqc_report/multiqc_data' [2023-11-14 23:27:24,866] multiqc [INFO ] MultiQC complete