[2023-11-14 23:28:14,243] multiqc [DEBUG ] This is MultiQC v1.11 [2023-11-14 23:28:14,243] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2023-11-14 23:28:14,243] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-11-14 23:28:14,244] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-14 23:28:14,244] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2023-11-14 23:28:14,244] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-11-14 23:28:14,245] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/06_CollectMetrics/ [2023-11-14 23:28:14,427] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-14 23:28:14,428] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/06_CollectMetrics/ [2023-11-14 23:28:14,428] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/14_final_summary/multiqc_report [2023-11-14 23:28:14,428] multiqc [DEBUG ] Template : default [2023-11-14 23:28:14,428] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2023-11-14 23:28:14,429] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2023-11-14 23:28:14,429] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpof15_fm3 [2023-11-14 23:28:14,494] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES [2023-11-14 23:28:14,494] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/03_FASTQC [2023-11-14 23:28:14,494] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/06_CollectMetrics [2023-11-14 23:28:14,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106506_pass.fastq.gz [2023-11-14 23:28:14,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M25_primary_unique.bam.bai [2023-11-14 23:28:14,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M25_primary_unique.bam [2023-11-14 23:28:14,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,901] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,901] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,902] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,902] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,902] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,902] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,902] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:14,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,882] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,883] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:15,903] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M25_featureCounts.out [2023-11-14 23:28:16,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M25_metrics [2023-11-14 23:28:16,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M25_metrics [2023-11-14 23:28:16,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M25_metrics [2023-11-14 23:28:16,837] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106494_pass.fastq.gz [2023-11-14 23:28:16,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M13_primary_unique.bam.bai [2023-11-14 23:28:16,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M13_primary_unique.bam [2023-11-14 23:28:16,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,975] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,975] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,976] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,976] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,976] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,976] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,976] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:16,995] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,939] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,944] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:17,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M13_featureCounts.out [2023-11-14 23:28:18,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M13_metrics [2023-11-14 23:28:18,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M13_metrics [2023-11-14 23:28:18,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M13_metrics [2023-11-14 23:28:18,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106500_pass.fastq.gz [2023-11-14 23:28:18,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M19_primary_unique.bam [2023-11-14 23:28:18,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M19_primary_unique.bam.bai [2023-11-14 23:28:19,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,010] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:19,987] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M19_featureCounts.out [2023-11-14 23:28:20,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M19_metrics [2023-11-14 23:28:20,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M19_metrics [2023-11-14 23:28:20,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M19_metrics [2023-11-14 23:28:20,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106503_pass.fastq.gz [2023-11-14 23:28:21,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M22_primary_unique.bam [2023-11-14 23:28:21,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M22_primary_unique.bam.bai [2023-11-14 23:28:21,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:21,122] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,055] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,064] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,064] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,064] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,065] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,065] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,065] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,065] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:22,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M22_featureCounts.out [2023-11-14 23:28:23,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M22_metrics [2023-11-14 23:28:23,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M22_metrics [2023-11-14 23:28:23,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M22_metrics [2023-11-14 23:28:23,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106484_pass.fastq.gz [2023-11-14 23:28:23,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M3_primary_unique.bam [2023-11-14 23:28:23,073] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M3_primary_unique.bam.bai [2023-11-14 23:28:23,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,162] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:23,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,148] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:24,170] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M3_featureCounts.out [2023-11-14 23:28:25,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M3_metrics [2023-11-14 23:28:25,098] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M3_metrics [2023-11-14 23:28:25,101] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M3_metrics [2023-11-14 23:28:25,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106486_pass.fastq.gz [2023-11-14 23:28:25,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M5_primary_unique.bam [2023-11-14 23:28:25,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M5_primary_unique.bam.bai [2023-11-14 23:28:25,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,248] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:25,269] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,216] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,222] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:26,243] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M5_featureCounts.out [2023-11-14 23:28:27,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M5_metrics [2023-11-14 23:28:27,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M5_metrics [2023-11-14 23:28:27,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M5_metrics [2023-11-14 23:28:27,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106510_pass.fastq.gz [2023-11-14 23:28:27,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M29_primary_unique.bam.bai [2023-11-14 23:28:27,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M29_primary_unique.bam [2023-11-14 23:28:27,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:27,366] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,274] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,274] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,275] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,275] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,275] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,275] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:28,295] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M29_featureCounts.out [2023-11-14 23:28:29,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M29_metrics [2023-11-14 23:28:29,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M29_metrics [2023-11-14 23:28:29,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M29_metrics [2023-11-14 23:28:29,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106512_pass.fastq.gz [2023-11-14 23:28:29,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M31_primary_unique.bam [2023-11-14 23:28:29,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M31_primary_unique.bam.bai [2023-11-14 23:28:29,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,331] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,331] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,336] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,336] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,337] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,337] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,337] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:29,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,282] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,285] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,285] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,285] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,285] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:30,306] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M31_featureCounts.out [2023-11-14 23:28:31,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M31_metrics [2023-11-14 23:28:31,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M31_metrics [2023-11-14 23:28:31,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M31_metrics [2023-11-14 23:28:31,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106488_pass.fastq.gz [2023-11-14 23:28:31,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M7_primary_unique.bam.bai [2023-11-14 23:28:31,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M7_primary_unique.bam [2023-11-14 23:28:31,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:31,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,403] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,403] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,403] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,404] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,404] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,404] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:32,430] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M7_featureCounts.out [2023-11-14 23:28:33,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M7_metrics [2023-11-14 23:28:33,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M7_metrics [2023-11-14 23:28:33,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M7_metrics [2023-11-14 23:28:33,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106496_pass.fastq.gz [2023-11-14 23:28:33,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M15_primary_unique.bam.bai [2023-11-14 23:28:33,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M15_primary_unique.bam [2023-11-14 23:28:33,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,483] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:33,505] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,489] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,493] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:34,513] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M15_featureCounts.out [2023-11-14 23:28:35,382] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M15_metrics [2023-11-14 23:28:35,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M15_metrics [2023-11-14 23:28:35,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M15_metrics [2023-11-14 23:28:35,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106505_pass.fastq.gz [2023-11-14 23:28:35,469] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M24_primary_unique.bam.bai [2023-11-14 23:28:35,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M24_primary_unique.bam [2023-11-14 23:28:35,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,535] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:35,556] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,555] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,555] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:36,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M24_featureCounts.out [2023-11-14 23:28:37,532] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M24_metrics [2023-11-14 23:28:37,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M24_metrics [2023-11-14 23:28:37,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M24_metrics [2023-11-14 23:28:37,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106492_pass.fastq.gz [2023-11-14 23:28:37,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M11_primary_unique.bam.bai [2023-11-14 23:28:37,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M11_primary_unique.bam [2023-11-14 23:28:37,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,699] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,699] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,700] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,700] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,700] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,700] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,700] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:37,722] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:38,664] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M11_featureCounts.out [2023-11-14 23:28:39,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M11_metrics [2023-11-14 23:28:39,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M11_metrics [2023-11-14 23:28:39,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M11_metrics [2023-11-14 23:28:39,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106483_pass.fastq.gz [2023-11-14 23:28:39,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M2_primary_unique.bam [2023-11-14 23:28:39,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M2_primary_unique.bam.bai [2023-11-14 23:28:39,677] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,679] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,679] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,683] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:39,703] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,624] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,629] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,630] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:40,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M2_featureCounts.out [2023-11-14 23:28:41,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M2_metrics [2023-11-14 23:28:41,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M2_metrics [2023-11-14 23:28:41,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M2_metrics [2023-11-14 23:28:41,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106511_pass.fastq.gz [2023-11-14 23:28:41,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M30_primary_unique.bam [2023-11-14 23:28:41,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M30_primary_unique.bam.bai [2023-11-14 23:28:41,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,796] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,797] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:41,823] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,766] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:42,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M30_featureCounts.out [2023-11-14 23:28:43,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M30_metrics [2023-11-14 23:28:43,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M30_metrics [2023-11-14 23:28:43,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M30_metrics [2023-11-14 23:28:43,724] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106493_pass.fastq.gz [2023-11-14 23:28:43,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M12_primary_unique.bam.bai [2023-11-14 23:28:43,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M12_primary_unique.bam [2023-11-14 23:28:43,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:43,846] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,780] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:44,800] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M12_featureCounts.out [2023-11-14 23:28:45,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M12_metrics [2023-11-14 23:28:45,711] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M12_metrics [2023-11-14 23:28:45,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M12_metrics [2023-11-14 23:28:45,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106504_pass.fastq.gz [2023-11-14 23:28:45,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M23_primary_unique.bam.bai [2023-11-14 23:28:45,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M23_primary_unique.bam [2023-11-14 23:28:45,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,844] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,849] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,849] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,850] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:45,871] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:46,837] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M23_featureCounts.out [2023-11-14 23:28:47,801] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M23_metrics [2023-11-14 23:28:47,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M23_metrics [2023-11-14 23:28:47,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M23_metrics [2023-11-14 23:28:47,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106489_pass.fastq.gz [2023-11-14 23:28:47,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M8_primary_unique.bam.bai [2023-11-14 23:28:47,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M8_primary_unique.bam [2023-11-14 23:28:47,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,936] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:47,961] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,903] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,904] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,908] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:48,928] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M8_featureCounts.out [2023-11-14 23:28:49,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M8_metrics [2023-11-14 23:28:49,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M8_metrics [2023-11-14 23:28:49,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M8_metrics [2023-11-14 23:28:49,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106499_pass.fastq.gz [2023-11-14 23:28:49,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M18_primary_unique.bam [2023-11-14 23:28:49,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M18_primary_unique.bam.bai [2023-11-14 23:28:50,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,053] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:50,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:51,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M18_featureCounts.out [2023-11-14 23:28:51,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M18_metrics [2023-11-14 23:28:51,922] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M18_metrics [2023-11-14 23:28:51,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M18_metrics [2023-11-14 23:28:51,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106513_pass.fastq.gz [2023-11-14 23:28:52,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M32_primary_unique.bam [2023-11-14 23:28:52,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M32_primary_unique.bam.bai [2023-11-14 23:28:52,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,110] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,116] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,116] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,117] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,117] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,117] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:52,141] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,100] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,108] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,108] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,109] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,109] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,109] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,109] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,109] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:53,131] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M32_featureCounts.out [2023-11-14 23:28:54,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M32_metrics [2023-11-14 23:28:54,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M32_metrics [2023-11-14 23:28:54,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M32_metrics [2023-11-14 23:28:54,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106482_pass.fastq.gz [2023-11-14 23:28:54,123] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M1_primary_unique.bam [2023-11-14 23:28:54,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M1_primary_unique.bam.bai [2023-11-14 23:28:54,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,187] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:54,207] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,124] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,127] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,127] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,130] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,130] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,130] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,130] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,130] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,131] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,131] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:55,150] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M1_featureCounts.out [2023-11-14 23:28:56,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M1_metrics [2023-11-14 23:28:56,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M1_metrics [2023-11-14 23:28:56,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M1_metrics [2023-11-14 23:28:56,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106490_pass.fastq.gz [2023-11-14 23:28:56,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M9_primary_unique.bam [2023-11-14 23:28:56,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M9_primary_unique.bam.bai [2023-11-14 23:28:56,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,196] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,196] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,196] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,196] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,196] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:56,219] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,179] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,180] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,181] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,181] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,184] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:57,205] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M9_featureCounts.out [2023-11-14 23:28:58,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M9_metrics [2023-11-14 23:28:58,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M9_metrics [2023-11-14 23:28:58,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M9_metrics [2023-11-14 23:28:58,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106502_pass.fastq.gz [2023-11-14 23:28:58,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M21_primary_unique.bam [2023-11-14 23:28:58,258] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M21_primary_unique.bam.bai [2023-11-14 23:28:58,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,296] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,301] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:58,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,258] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,260] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,264] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:28:59,285] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M21_featureCounts.out [2023-11-14 23:29:00,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M21_metrics [2023-11-14 23:29:00,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M21_metrics [2023-11-14 23:29:00,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M21_metrics [2023-11-14 23:29:00,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106497_pass.fastq.gz [2023-11-14 23:29:00,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M16_primary_unique.bam.bai [2023-11-14 23:29:00,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M16_primary_unique.bam [2023-11-14 23:29:00,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,341] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:00,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,299] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,301] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,301] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,305] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:01,327] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M16_featureCounts.out [2023-11-14 23:29:02,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M16_metrics [2023-11-14 23:29:02,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M16_metrics [2023-11-14 23:29:02,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M16_metrics [2023-11-14 23:29:02,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106491_pass.fastq.gz [2023-11-14 23:29:02,324] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M10_primary_unique.bam.bai [2023-11-14 23:29:02,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M10_primary_unique.bam [2023-11-14 23:29:02,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,427] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,432] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,433] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:02,454] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,417] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:03,438] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M10_featureCounts.out [2023-11-14 23:29:04,326] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M10_metrics [2023-11-14 23:29:04,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M10_metrics [2023-11-14 23:29:04,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M10_metrics [2023-11-14 23:29:04,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106485_pass.fastq.gz [2023-11-14 23:29:04,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M4_primary_unique.bam.bai [2023-11-14 23:29:04,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M4_primary_unique.bam [2023-11-14 23:29:04,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,466] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:04,487] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,417] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,419] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,419] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:05,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M4_featureCounts.out [2023-11-14 23:29:06,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M4_metrics [2023-11-14 23:29:06,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M4_metrics [2023-11-14 23:29:06,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M4_metrics [2023-11-14 23:29:06,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106501_pass.fastq.gz [2023-11-14 23:29:06,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M20_primary_unique.bam [2023-11-14 23:29:06,469] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M20_primary_unique.bam.bai [2023-11-14 23:29:06,509] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,516] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,516] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:06,539] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,524] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,524] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,524] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,524] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:07,549] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M20_featureCounts.out [2023-11-14 23:29:08,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M20_metrics [2023-11-14 23:29:08,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M20_metrics [2023-11-14 23:29:08,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M20_metrics [2023-11-14 23:29:08,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106498_pass.fastq.gz [2023-11-14 23:29:08,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M17_primary_unique.bam.bai [2023-11-14 23:29:08,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M17_primary_unique.bam [2023-11-14 23:29:08,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:08,726] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,656] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,656] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,656] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,661] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,661] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,662] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,662] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:09,683] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M17_featureCounts.out [2023-11-14 23:29:10,586] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M17_metrics [2023-11-14 23:29:10,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M17_metrics [2023-11-14 23:29:10,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M17_metrics [2023-11-14 23:29:10,616] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106508_pass.fastq.gz [2023-11-14 23:29:10,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M27_primary_unique.bam.bai [2023-11-14 23:29:10,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M27_primary_unique.bam [2023-11-14 23:29:10,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,717] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:10,739] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:11,728] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M27_featureCounts.out [2023-11-14 23:29:12,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M27_metrics [2023-11-14 23:29:12,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M27_metrics [2023-11-14 23:29:12,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M27_metrics [2023-11-14 23:29:12,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106495_pass.fastq.gz [2023-11-14 23:29:12,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M14_primary_unique.bam [2023-11-14 23:29:12,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M14_primary_unique.bam.bai [2023-11-14 23:29:12,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:12,848] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,792] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,798] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,799] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,799] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,799] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,799] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,799] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:13,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M14_featureCounts.out [2023-11-14 23:29:14,728] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M14_metrics [2023-11-14 23:29:14,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M14_metrics [2023-11-14 23:29:14,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M14_metrics [2023-11-14 23:29:14,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106487_pass.fastq.gz [2023-11-14 23:29:14,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M6_primary_unique.bam.bai [2023-11-14 23:29:14,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M6_primary_unique.bam [2023-11-14 23:29:14,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,866] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:14,887] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,828] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:15,847] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M6_featureCounts.out [2023-11-14 23:29:16,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M6_metrics [2023-11-14 23:29:16,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M6_metrics [2023-11-14 23:29:16,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M6_metrics [2023-11-14 23:29:16,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106507_pass.fastq.gz [2023-11-14 23:29:16,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M26_primary_unique.bam.bai [2023-11-14 23:29:16,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M26_primary_unique.bam [2023-11-14 23:29:16,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,903] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:16,939] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,932] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,932] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,932] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,932] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,932] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,933] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,933] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:17,958] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M26_featureCounts.out [2023-11-14 23:29:18,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M26_metrics [2023-11-14 23:29:18,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M26_metrics [2023-11-14 23:29:18,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M26_metrics [2023-11-14 23:29:18,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106509_pass.fastq.gz [2023-11-14 23:29:18,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M28_primary_unique.bam.bai [2023-11-14 23:29:18,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138391_M28_primary_unique.bam [2023-11-14 23:29:19,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,034] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,993] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,993] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,994] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,994] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,994] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,994] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:19,994] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:20,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138391_M28_featureCounts.out [2023-11-14 23:29:20,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138391_M28_metrics [2023-11-14 23:29:20,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138391_M28_metrics [2023-11-14 23:29:20,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138391_M28_metrics [2023-11-14 23:29:20,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:20,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:20,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:20,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:29:20,987] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:29:20,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:29:20,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:29:21,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:29:21,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:29:21,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:29:21,014] multiqc [DEBUG ] File 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] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106484_pass_fastqc.html [2023-11-14 23:29:22,017] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106484_pass_fastqc.html [2023-11-14 23:29:22,017] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106484_pass_fastqc.html [2023-11-14 23:29:22,017] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106484_pass_fastqc.html [2023-11-14 23:29:22,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106486_pass_fastqc.html [2023-11-14 23:29:22,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106486_pass_fastqc.html [2023-11-14 23:29:22,162] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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[2023-11-14 23:29:22,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106488_pass_fastqc.html [2023-11-14 23:29:22,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106488_pass_fastqc.html [2023-11-14 23:29:22,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106488_pass_fastqc.html [2023-11-14 23:29:22,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106488_pass_fastqc.html [2023-11-14 23:29:22,427] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106488_pass_fastqc.html [2023-11-14 23:29:22,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106488_pass_fastqc.html [2023-11-14 23:29:22,427] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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23:29:22,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106509_pass_fastqc.html [2023-11-14 23:29:22,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106487_pass_fastqc.html [2023-11-14 23:29:22,668] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106493_pass_fastqc.html [2023-11-14 23:29:22,915] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106493_pass_fastqc.html [2023-11-14 23:29:22,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106493_pass_fastqc.html [2023-11-14 23:29:22,931] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106493_pass_fastqc.html [2023-11-14 23:29:22,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106493_pass_fastqc.html [2023-11-14 23:29:22,931] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106493_pass_fastqc.html [2023-11-14 23:29:22,931] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 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pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,291] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106499_pass_fastqc.html [2023-11-14 23:29:23,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106489_pass_fastqc.html [2023-11-14 23:29:23,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106489_pass_fastqc.html [2023-11-14 23:29:23,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106489_pass_fastqc.html [2023-11-14 23:29:23,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106489_pass_fastqc.html [2023-11-14 23:29:23,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106508_pass_fastqc.html [2023-11-14 23:29:23,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106508_pass_fastqc.html [2023-11-14 23:29:23,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106508_pass_fastqc.html [2023-11-14 23:29:23,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106508_pass_fastqc.html [2023-11-14 23:29:23,537] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern 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[2023-11-14 23:29:23,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106503_pass_fastqc.html [2023-11-14 23:29:23,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106503_pass_fastqc.html [2023-11-14 23:29:23,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106503_pass_fastqc.html [2023-11-14 23:29:23,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106503_pass_fastqc.html [2023-11-14 23:29:23,655] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106503_pass_fastqc.html [2023-11-14 23:29:23,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106503_pass_fastqc.html [2023-11-14 23:29:23,656] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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23:29:23,771] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,775] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106511_pass_fastqc.html [2023-11-14 23:29:23,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106497_pass_fastqc.html [2023-11-14 23:29:23,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106497_pass_fastqc.html [2023-11-14 23:29:23,886] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106497_pass_fastqc.html [2023-11-14 23:29:23,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106497_pass_fastqc.html [2023-11-14 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] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106485_pass_fastqc.html [2023-11-14 23:29:24,507] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106485_pass_fastqc.html [2023-11-14 23:29:24,507] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106485_pass_fastqc.html [2023-11-14 23:29:24,507] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106485_pass_fastqc.html [2023-11-14 23:29:24,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106512_pass_fastqc.html [2023-11-14 23:29:24,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106512_pass_fastqc.html [2023-11-14 23:29:24,618] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106512_pass_fastqc.html [2023-11-14 23:29:24,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106512_pass_fastqc.html [2023-11-14 23:29:24,734] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106495_pass_fastqc.html [2023-11-14 23:29:24,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106495_pass_fastqc.html [2023-11-14 23:29:24,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106495_pass_fastqc.html [2023-11-14 23:29:24,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106495_pass_fastqc.html [2023-11-14 23:29:24,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern 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[2023-11-14 23:29:24,854] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106498_pass_fastqc.html [2023-11-14 23:29:24,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106498_pass_fastqc.html [2023-11-14 23:29:24,856] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106498_pass_fastqc.html [2023-11-14 23:29:24,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106498_pass_fastqc.html [2023-11-14 23:29:24,859] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106498_pass_fastqc.html [2023-11-14 23:29:24,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106498_pass_fastqc.html [2023-11-14 23:29:24,859] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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23:29:24,970] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:24,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106501_pass_fastqc.html [2023-11-14 23:29:25,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106483_pass_fastqc.html [2023-11-14 23:29:25,098] multiqc [DEBUG ] File ignored by 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multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106500_pass_fastqc.html [2023-11-14 23:29:25,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106500_pass_fastqc.html [2023-11-14 23:29:25,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:25,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:25,938] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:25,938] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:29:25,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh 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Step_06_GSE138391_GSE138391_M23.o2559057 [2023-11-14 23:29:26,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M23.o2559057 [2023-11-14 23:29:26,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M23.o2559057 [2023-11-14 23:29:26,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M20.o2559054 [2023-11-14 23:29:26,277] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M20.o2559054 [2023-11-14 23:29:26,277] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M20.o2559054 [2023-11-14 23:29:26,277] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M20.o2559054 [2023-11-14 23:29:26,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M20.o2559054 [2023-11-14 23:29:26,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M13.o2559047 [2023-11-14 23:29:26,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M13.o2559047 [2023-11-14 23:29:26,291] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M13.o2559047 [2023-11-14 23:29:26,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M13.o2559047 [2023-11-14 23:29:26,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M13.o2559047 [2023-11-14 23:29:26,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M27.o2559061 [2023-11-14 23:29:26,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M27.o2559061 [2023-11-14 23:29:26,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M27.o2559061 [2023-11-14 23:29:26,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M27.o2559061 [2023-11-14 23:29:26,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M27.o2559061 [2023-11-14 23:29:26,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M21.o2559055 [2023-11-14 23:29:26,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M21.o2559055 [2023-11-14 23:29:26,327] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M21.o2559055 [2023-11-14 23:29:26,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M21.o2559055 [2023-11-14 23:29:26,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M21.o2559055 [2023-11-14 23:29:26,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M5.o2559039 [2023-11-14 23:29:26,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M5.o2559039 [2023-11-14 23:29:26,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M5.o2559039 [2023-11-14 23:29:26,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M5.o2559039 [2023-11-14 23:29:26,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M5.o2559039 [2023-11-14 23:29:26,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M8.o2559042 [2023-11-14 23:29:26,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M8.o2559042 [2023-11-14 23:29:26,362] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M8.o2559042 [2023-11-14 23:29:26,362] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M8.o2559042 [2023-11-14 23:29:26,365] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M8.o2559042 [2023-11-14 23:29:26,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M17.o2559051 [2023-11-14 23:29:26,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M17.o2559051 [2023-11-14 23:29:26,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M17.o2559051 [2023-11-14 23:29:26,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M17.o2559051 [2023-11-14 23:29:26,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M17.o2559051 [2023-11-14 23:29:26,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M26.o2559060 [2023-11-14 23:29:26,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M26.o2559060 [2023-11-14 23:29:26,393] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M26.o2559060 [2023-11-14 23:29:26,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M26.o2559060 [2023-11-14 23:29:26,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M26.o2559060 [2023-11-14 23:29:26,413] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M10.o2559044 [2023-11-14 23:29:26,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M10.o2559044 [2023-11-14 23:29:26,415] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M10.o2559044 [2023-11-14 23:29:26,415] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M10.o2559044 [2023-11-14 23:29:26,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M10.o2559044 [2023-11-14 23:29:26,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M12.o2559046 [2023-11-14 23:29:26,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M12.o2559046 [2023-11-14 23:29:26,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M12.o2559046 [2023-11-14 23:29:26,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M12.o2559046 [2023-11-14 23:29:26,434] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M12.o2559046 [2023-11-14 23:29:26,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M16.o2559050 [2023-11-14 23:29:26,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M16.o2559050 [2023-11-14 23:29:26,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M16.o2559050 [2023-11-14 23:29:26,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M16.o2559050 [2023-11-14 23:29:26,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M16.o2559050 [2023-11-14 23:29:26,469] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M9.o2559043 [2023-11-14 23:29:26,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M9.o2559043 [2023-11-14 23:29:26,471] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M9.o2559043 [2023-11-14 23:29:26,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M9.o2559043 [2023-11-14 23:29:26,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M9.o2559043 [2023-11-14 23:29:26,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M31.o2559065 [2023-11-14 23:29:26,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M31.o2559065 [2023-11-14 23:29:26,486] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M31.o2559065 [2023-11-14 23:29:26,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M31.o2559065 [2023-11-14 23:29:26,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M31.o2559065 [2023-11-14 23:29:26,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M25.o2559059 [2023-11-14 23:29:26,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M25.o2559059 [2023-11-14 23:29:26,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M25.o2559059 [2023-11-14 23:29:26,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M25.o2559059 [2023-11-14 23:29:26,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138391_GSE138391_M25.o2559059 [2023-11-14 23:29:26,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-14 23:29:26,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-14 23:29:26,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-14 23:29:26,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:26,556] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:29:27,351] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:29:27,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:29:27,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:29:27,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:29:27,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:29:27,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:29:27,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:29:27,390] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:29:27,390] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:29:27,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:29:27,678] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 23:29:27,678] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 23:29:27,680] multiqc [DEBUG ] No samples found: custom_content [2023-11-14 23:29:27,683] multiqc [DEBUG ] No samples found: ccs [2023-11-14 23:29:27,687] multiqc [DEBUG ] No samples found: ngsderive [2023-11-14 23:29:27,690] multiqc [DEBUG ] No samples found: purple [2023-11-14 23:29:27,693] multiqc [DEBUG ] No samples found: conpair [2023-11-14 23:29:27,696] multiqc [DEBUG ] No samples found: lima [2023-11-14 23:29:27,699] multiqc [DEBUG ] No samples found: peddy [2023-11-14 23:29:27,702] multiqc [DEBUG ] No samples found: somalier [2023-11-14 23:29:27,705] multiqc [DEBUG ] No samples found: methylQA [2023-11-14 23:29:27,710] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2023-11-14 23:29:27,710] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2023-11-14 23:29:27,710] multiqc [DEBUG ] No samples found: mosdepth [2023-11-14 23:29:27,713] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-14 23:29:27,716] multiqc [DEBUG ] No samples found: qualimap [2023-11-14 23:29:27,719] multiqc [DEBUG ] No samples found: preseq [2023-11-14 23:29:27,722] multiqc [DEBUG ] No samples found: quast [2023-11-14 23:29:27,726] multiqc [DEBUG ] No samples found: qorts [2023-11-14 23:29:27,730] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-14 23:29:27,733] multiqc [DEBUG ] No samples found: rockhopper [2023-11-14 23:29:27,736] multiqc [DEBUG ] No samples found: rsem [2023-11-14 23:29:27,754] multiqc.modules.rseqc.rseqc [INFO ] Found 32 infer_experiment reports [2023-11-14 23:29:27,758] multiqc [DEBUG ] No samples found: busco [2023-11-14 23:29:27,761] multiqc [DEBUG ] No samples found: bustools [2023-11-14 23:29:27,764] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-14 23:29:27,768] multiqc [DEBUG ] No samples found: gffcompare [2023-11-14 23:29:27,770] multiqc [DEBUG ] No samples found: disambiguate [2023-11-14 23:29:27,773] multiqc [DEBUG ] No samples found: supernova [2023-11-14 23:29:27,780] multiqc [DEBUG ] No samples found: deeptools [2023-11-14 23:29:27,783] multiqc [DEBUG ] No samples found: sargasso [2023-11-14 23:29:27,786] multiqc [DEBUG ] No samples found: verifybamid [2023-11-14 23:29:27,790] multiqc [DEBUG ] No samples found: mirtrace [2023-11-14 23:29:27,792] multiqc [DEBUG ] No samples found: happy [2023-11-14 23:29:27,796] multiqc [DEBUG ] No samples found: mirtop [2023-11-14 23:29:27,799] multiqc [DEBUG ] No samples found: sambamba [2023-11-14 23:29:27,803] multiqc [DEBUG ] No samples found: homer [2023-11-14 23:29:27,806] multiqc [DEBUG ] No samples found: hops [2023-11-14 23:29:27,809] multiqc [DEBUG ] No samples found: macs2 [2023-11-14 23:29:27,812] multiqc [DEBUG ] No samples found: theta2 [2023-11-14 23:29:27,815] multiqc [DEBUG ] No samples found: snpeff [2023-11-14 23:29:27,820] multiqc [DEBUG ] No samples found: gatk [2023-11-14 23:29:27,825] multiqc [DEBUG ] No samples found: htseq [2023-11-14 23:29:27,829] multiqc [DEBUG ] No samples found: bcftools [2023-11-14 23:29:27,834] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M25_sorted [2023-11-14 23:29:27,834] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M13_sorted [2023-11-14 23:29:27,835] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M19_sorted [2023-11-14 23:29:27,836] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M22_sorted [2023-11-14 23:29:27,836] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M3_sorted [2023-11-14 23:29:27,837] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M5_sorted [2023-11-14 23:29:27,837] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M29_sorted [2023-11-14 23:29:27,838] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M31_sorted [2023-11-14 23:29:27,839] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M7_sorted [2023-11-14 23:29:27,839] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M15_sorted [2023-11-14 23:29:27,840] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M24_sorted [2023-11-14 23:29:27,840] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M11_sorted [2023-11-14 23:29:27,841] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M2_sorted [2023-11-14 23:29:27,842] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M30_sorted [2023-11-14 23:29:27,842] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M12_sorted [2023-11-14 23:29:27,842] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M23_sorted [2023-11-14 23:29:27,843] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M8_sorted [2023-11-14 23:29:27,843] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M18_sorted [2023-11-14 23:29:27,844] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M32_sorted [2023-11-14 23:29:27,844] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M1_sorted [2023-11-14 23:29:27,845] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M9_sorted [2023-11-14 23:29:27,845] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M21_sorted [2023-11-14 23:29:27,846] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M16_sorted [2023-11-14 23:29:27,846] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M10_sorted [2023-11-14 23:29:27,846] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M4_sorted [2023-11-14 23:29:27,847] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M20_sorted [2023-11-14 23:29:27,847] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M17_sorted [2023-11-14 23:29:27,848] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M27_sorted [2023-11-14 23:29:27,848] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M14_sorted [2023-11-14 23:29:27,849] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M6_sorted [2023-11-14 23:29:27,849] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M26_sorted [2023-11-14 23:29:27,850] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138391_M28_sorted [2023-11-14 23:29:27,850] multiqc.modules.featureCounts.feature_counts [INFO ] Found 32 reports [2023-11-14 23:29:27,856] multiqc [DEBUG ] No samples found: fgbio [2023-11-14 23:29:27,873] multiqc [DEBUG ] No samples found: dragen [2023-11-14 23:29:27,877] multiqc [DEBUG ] No samples found: dedup [2023-11-14 23:29:27,881] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-14 23:29:27,896] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-14 23:29:27,899] multiqc [DEBUG ] No samples found: jcvi [2023-11-14 23:29:27,903] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-14 23:29:27,954] multiqc.modules.picard.picard [INFO ] Found 32 RnaSeqMetrics reports [2023-11-14 23:29:27,958] multiqc [DEBUG ] No samples found: vep [2023-11-14 23:29:27,965] multiqc [DEBUG ] No samples found: sentieon [2023-11-14 23:29:27,968] multiqc [DEBUG ] No samples found: prokka [2023-11-14 23:29:27,971] multiqc [DEBUG ] No samples found: qc3C [2023-11-14 23:29:27,974] multiqc [DEBUG ] No samples found: nanostat [2023-11-14 23:29:27,977] multiqc [DEBUG ] No samples found: samblaster [2023-11-14 23:29:28,013] multiqc.modules.samtools.samtools [INFO ] Found 96 flagstat reports [2023-11-14 23:29:28,016] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-14 23:29:28,019] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2023-11-14 23:29:28,022] multiqc [DEBUG ] No samples found: bamtools [2023-11-14 23:29:28,025] multiqc [DEBUG ] No samples found: jellyfish [2023-11-14 23:29:28,030] multiqc [DEBUG ] No samples found: vcftools [2023-11-14 23:29:28,033] multiqc [DEBUG ] No samples found: longranger [2023-11-14 23:29:28,035] multiqc [DEBUG ] No samples found: stacks [2023-11-14 23:29:28,039] multiqc [DEBUG ] No samples found: varscan2 [2023-11-14 23:29:28,042] multiqc [DEBUG ] No samples found: snippy [2023-11-14 23:29:28,050] multiqc [DEBUG ] No samples found: bbmap [2023-11-14 23:29:28,053] multiqc [DEBUG ] No samples found: bismark [2023-11-14 23:29:28,056] multiqc [DEBUG ] No samples found: biscuit [2023-11-14 23:29:28,060] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-14 23:29:28,064] multiqc [DEBUG ] No samples found: hicup [2023-11-14 23:29:28,067] multiqc [DEBUG ] No samples found: hicpro [2023-11-14 23:29:28,069] multiqc [DEBUG ] No samples found: salmon [2023-11-14 23:29:28,073] multiqc [DEBUG ] No samples found: kallisto [2023-11-14 23:29:28,076] multiqc [DEBUG ] No samples found: slamdunk [2023-11-14 23:29:28,094] multiqc.modules.star.star [INFO ] Found 32 reports [2023-11-14 23:29:28,098] multiqc [DEBUG ] No samples found: hisat2 [2023-11-14 23:29:28,101] multiqc [DEBUG ] No samples found: tophat [2023-11-14 23:29:28,104] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-14 23:29:28,108] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-14 23:29:28,110] multiqc [DEBUG ] No samples found: snpsplit [2023-11-14 23:29:28,113] multiqc [DEBUG ] No samples found: odgi [2023-11-14 23:29:28,117] multiqc [DEBUG ] No samples found: pangolin [2023-11-14 23:29:28,120] multiqc [DEBUG ] No samples found: kat [2023-11-14 23:29:28,123] multiqc [DEBUG ] No samples found: leehom [2023-11-14 23:29:28,126] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-14 23:29:28,129] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-14 23:29:28,132] multiqc [DEBUG ] No samples found: cutadapt [2023-11-14 23:29:28,136] multiqc [DEBUG ] No samples found: flexbar [2023-11-14 23:29:28,139] multiqc [DEBUG ] No samples found: kaiju [2023-11-14 23:29:28,142] multiqc [DEBUG ] No samples found: kraken [2023-11-14 23:29:28,145] multiqc [DEBUG ] No samples found: malt [2023-11-14 23:29:28,148] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-14 23:29:28,151] multiqc [DEBUG ] No samples found: sickle [2023-11-14 23:29:28,154] multiqc [DEBUG ] No samples found: skewer [2023-11-14 23:29:28,157] multiqc [DEBUG ] No samples found: sortmerna [2023-11-14 23:29:28,161] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-14 23:29:28,164] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-14 23:29:28,168] multiqc [DEBUG ] No samples found: afterqc [2023-11-14 23:29:28,176] multiqc [DEBUG ] No samples found: fastp [2023-11-14 23:29:29,224] multiqc.modules.fastqc.fastqc [INFO ] Found 32 reports [2023-11-14 23:29:29,568] multiqc [DEBUG ] No samples found: pychopper [2023-11-14 23:29:29,571] multiqc [DEBUG ] No samples found: pycoqc [2023-11-14 23:29:29,574] multiqc [DEBUG ] No samples found: minionqc [2023-11-14 23:29:29,577] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-14 23:29:29,581] multiqc [DEBUG ] No samples found: clusterflow [2023-11-14 23:29:29,584] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-14 23:29:29,587] multiqc [DEBUG ] No samples found: bclconvert [2023-11-14 23:29:29,590] multiqc [DEBUG ] No samples found: interop [2023-11-14 23:29:29,593] multiqc [DEBUG ] No samples found: ivar [2023-11-14 23:29:29,596] multiqc [DEBUG ] No samples found: flash [2023-11-14 23:29:29,599] multiqc [DEBUG ] No samples found: seqyclean [2023-11-14 23:29:29,602] multiqc [DEBUG ] No samples found: optitype [2023-11-14 23:29:29,687] multiqc [INFO ] Compressing plot data [2023-11-14 23:29:30,196] multiqc [INFO ] Report : multiqc_report.html [2023-11-14 23:29:30,197] multiqc [INFO ] Data : multiqc_data [2023-11-14 23:29:30,197] multiqc [DEBUG ] Moving data file from '/scratch/tmpof15_fm3/multiqc_data' to '/projectnb/wax-dk/max/RK_grant_proposal/GSE138391/Scripts/14_final_summary/multiqc_report/multiqc_data' [2023-11-14 23:29:30,295] multiqc [INFO ] MultiQC complete