Module Section Sample Name Source RSeQC infer_experiment GSE138391_M25_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/Read_Strandness/GSE138391_M25_Read_Strandness.txt RSeQC infer_experiment GSE138391_M13_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/Read_Strandness/GSE138391_M13_Read_Strandness.txt RSeQC infer_experiment GSE138391_M19_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M19/Read_Strandness/GSE138391_M19_Read_Strandness.txt RSeQC infer_experiment GSE138391_M22_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M22/Read_Strandness/GSE138391_M22_Read_Strandness.txt RSeQC infer_experiment GSE138391_M3_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M3/Read_Strandness/GSE138391_M3_Read_Strandness.txt RSeQC infer_experiment GSE138391_M5_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M5/Read_Strandness/GSE138391_M5_Read_Strandness.txt RSeQC infer_experiment GSE138391_M29_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M29/Read_Strandness/GSE138391_M29_Read_Strandness.txt RSeQC infer_experiment GSE138391_M31_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M31/Read_Strandness/GSE138391_M31_Read_Strandness.txt RSeQC infer_experiment GSE138391_M7_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M7/Read_Strandness/GSE138391_M7_Read_Strandness.txt RSeQC infer_experiment GSE138391_M15_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M15/Read_Strandness/GSE138391_M15_Read_Strandness.txt RSeQC infer_experiment GSE138391_M24_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M24/Read_Strandness/GSE138391_M24_Read_Strandness.txt RSeQC infer_experiment GSE138391_M11_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M11/Read_Strandness/GSE138391_M11_Read_Strandness.txt RSeQC infer_experiment GSE138391_M2_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M2/Read_Strandness/GSE138391_M2_Read_Strandness.txt RSeQC infer_experiment GSE138391_M30_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M30/Read_Strandness/GSE138391_M30_Read_Strandness.txt RSeQC infer_experiment GSE138391_M12_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M12/Read_Strandness/GSE138391_M12_Read_Strandness.txt RSeQC infer_experiment GSE138391_M23_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M23/Read_Strandness/GSE138391_M23_Read_Strandness.txt RSeQC infer_experiment GSE138391_M8_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M8/Read_Strandness/GSE138391_M8_Read_Strandness.txt RSeQC infer_experiment GSE138391_M18_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M18/Read_Strandness/GSE138391_M18_Read_Strandness.txt RSeQC infer_experiment GSE138391_M32_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M32/Read_Strandness/GSE138391_M32_Read_Strandness.txt RSeQC infer_experiment GSE138391_M1_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M1/Read_Strandness/GSE138391_M1_Read_Strandness.txt RSeQC infer_experiment GSE138391_M9_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M9/Read_Strandness/GSE138391_M9_Read_Strandness.txt RSeQC infer_experiment GSE138391_M21_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M21/Read_Strandness/GSE138391_M21_Read_Strandness.txt RSeQC infer_experiment GSE138391_M16_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M16/Read_Strandness/GSE138391_M16_Read_Strandness.txt RSeQC infer_experiment GSE138391_M10_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M10/Read_Strandness/GSE138391_M10_Read_Strandness.txt RSeQC infer_experiment GSE138391_M4_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M4/Read_Strandness/GSE138391_M4_Read_Strandness.txt RSeQC infer_experiment GSE138391_M20_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M20/Read_Strandness/GSE138391_M20_Read_Strandness.txt RSeQC infer_experiment GSE138391_M17_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M17/Read_Strandness/GSE138391_M17_Read_Strandness.txt RSeQC infer_experiment GSE138391_M27_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M27/Read_Strandness/GSE138391_M27_Read_Strandness.txt RSeQC infer_experiment GSE138391_M14_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M14/Read_Strandness/GSE138391_M14_Read_Strandness.txt RSeQC infer_experiment GSE138391_M6_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M6/Read_Strandness/GSE138391_M6_Read_Strandness.txt RSeQC infer_experiment GSE138391_M26_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M26/Read_Strandness/GSE138391_M26_Read_Strandness.txt RSeQC infer_experiment GSE138391_M28_Read_Strandness /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M28/Read_Strandness/GSE138391_M28_Read_Strandness.txt featureCounts all_sections GSE138391_M25_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M25_featureCounts.out.summary featureCounts all_sections GSE138391_M13_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M13_featureCounts.out.summary featureCounts all_sections GSE138391_M19_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M19/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M19_featureCounts.out.summary featureCounts all_sections GSE138391_M22_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M22/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M22_featureCounts.out.summary featureCounts all_sections GSE138391_M3_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M3/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M3_featureCounts.out.summary featureCounts all_sections GSE138391_M5_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M5/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M5_featureCounts.out.summary featureCounts all_sections GSE138391_M29_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M29/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M29_featureCounts.out.summary featureCounts all_sections GSE138391_M31_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M31/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M31_featureCounts.out.summary featureCounts all_sections GSE138391_M7_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M7/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M7_featureCounts.out.summary featureCounts all_sections GSE138391_M15_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M15/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M15_featureCounts.out.summary featureCounts all_sections GSE138391_M24_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M24/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M24_featureCounts.out.summary featureCounts all_sections GSE138391_M11_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M11_featureCounts.out.summary featureCounts all_sections GSE138391_M2_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M2/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M2_featureCounts.out.summary featureCounts all_sections GSE138391_M30_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M30/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M30_featureCounts.out.summary featureCounts all_sections GSE138391_M12_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M12_featureCounts.out.summary featureCounts all_sections GSE138391_M23_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M23/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M23_featureCounts.out.summary featureCounts all_sections GSE138391_M8_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M8/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M8_featureCounts.out.summary featureCounts all_sections GSE138391_M18_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M18/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M18_featureCounts.out.summary featureCounts all_sections GSE138391_M32_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M32/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M32_featureCounts.out.summary featureCounts all_sections GSE138391_M1_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M1/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M1_featureCounts.out.summary featureCounts all_sections GSE138391_M9_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M9/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M9_featureCounts.out.summary featureCounts all_sections GSE138391_M21_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M21/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M21_featureCounts.out.summary featureCounts all_sections GSE138391_M16_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M16/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M16_featureCounts.out.summary featureCounts all_sections GSE138391_M10_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M10_featureCounts.out.summary featureCounts all_sections GSE138391_M4_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M4/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M4_featureCounts.out.summary featureCounts all_sections GSE138391_M20_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M20/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M20_featureCounts.out.summary featureCounts all_sections GSE138391_M17_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M17/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M17_featureCounts.out.summary featureCounts all_sections GSE138391_M27_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M27/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M27_featureCounts.out.summary featureCounts all_sections GSE138391_M14_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M14/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M14_featureCounts.out.summary featureCounts all_sections GSE138391_M6_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M6/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M6_featureCounts.out.summary featureCounts all_sections GSE138391_M26_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M26/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M26_featureCounts.out.summary featureCounts all_sections GSE138391_M28_sorted /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M28/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE138391_M28_featureCounts.out.summary Picard RnaSeqMetrics GSE138391_M25_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/CollectRnaSeqMetrics/GSE138391_M25_metrics Picard RnaSeqMetrics GSE138391_M13_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/CollectRnaSeqMetrics/GSE138391_M13_metrics Picard RnaSeqMetrics GSE138391_M19_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M19/CollectRnaSeqMetrics/GSE138391_M19_metrics Picard RnaSeqMetrics GSE138391_M22_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M22/CollectRnaSeqMetrics/GSE138391_M22_metrics Picard RnaSeqMetrics GSE138391_M3_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M3/CollectRnaSeqMetrics/GSE138391_M3_metrics Picard RnaSeqMetrics GSE138391_M5_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M5/CollectRnaSeqMetrics/GSE138391_M5_metrics Picard RnaSeqMetrics GSE138391_M29_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M29/CollectRnaSeqMetrics/GSE138391_M29_metrics Picard RnaSeqMetrics GSE138391_M31_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M31/CollectRnaSeqMetrics/GSE138391_M31_metrics Picard RnaSeqMetrics GSE138391_M7_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M7/CollectRnaSeqMetrics/GSE138391_M7_metrics Picard RnaSeqMetrics GSE138391_M15_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M15/CollectRnaSeqMetrics/GSE138391_M15_metrics Picard RnaSeqMetrics GSE138391_M24_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M24/CollectRnaSeqMetrics/GSE138391_M24_metrics Picard RnaSeqMetrics GSE138391_M11_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M11/CollectRnaSeqMetrics/GSE138391_M11_metrics Picard RnaSeqMetrics GSE138391_M2_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M2/CollectRnaSeqMetrics/GSE138391_M2_metrics Picard RnaSeqMetrics GSE138391_M30_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M30/CollectRnaSeqMetrics/GSE138391_M30_metrics Picard RnaSeqMetrics GSE138391_M12_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M12/CollectRnaSeqMetrics/GSE138391_M12_metrics Picard RnaSeqMetrics GSE138391_M23_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M23/CollectRnaSeqMetrics/GSE138391_M23_metrics Picard RnaSeqMetrics GSE138391_M8_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M8/CollectRnaSeqMetrics/GSE138391_M8_metrics Picard RnaSeqMetrics GSE138391_M18_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M18/CollectRnaSeqMetrics/GSE138391_M18_metrics Picard RnaSeqMetrics GSE138391_M32_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M32/CollectRnaSeqMetrics/GSE138391_M32_metrics Picard RnaSeqMetrics GSE138391_M1_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M1/CollectRnaSeqMetrics/GSE138391_M1_metrics Picard RnaSeqMetrics GSE138391_M9_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M9/CollectRnaSeqMetrics/GSE138391_M9_metrics Picard RnaSeqMetrics GSE138391_M21_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M21/CollectRnaSeqMetrics/GSE138391_M21_metrics Picard RnaSeqMetrics GSE138391_M16_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M16/CollectRnaSeqMetrics/GSE138391_M16_metrics Picard RnaSeqMetrics GSE138391_M10_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M10/CollectRnaSeqMetrics/GSE138391_M10_metrics Picard RnaSeqMetrics GSE138391_M4_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M4/CollectRnaSeqMetrics/GSE138391_M4_metrics Picard RnaSeqMetrics GSE138391_M20_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M20/CollectRnaSeqMetrics/GSE138391_M20_metrics Picard RnaSeqMetrics GSE138391_M17_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M17/CollectRnaSeqMetrics/GSE138391_M17_metrics Picard RnaSeqMetrics GSE138391_M27_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M27/CollectRnaSeqMetrics/GSE138391_M27_metrics Picard RnaSeqMetrics GSE138391_M14_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M14/CollectRnaSeqMetrics/GSE138391_M14_metrics Picard RnaSeqMetrics GSE138391_M6_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M6/CollectRnaSeqMetrics/GSE138391_M6_metrics Picard RnaSeqMetrics GSE138391_M26_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M26/CollectRnaSeqMetrics/GSE138391_M26_metrics Picard RnaSeqMetrics GSE138391_M28_primary_unique /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M28/CollectRnaSeqMetrics/GSE138391_M28_metrics Samtools flagstat GSE138391_M25_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/aligner/GSE138391_M25_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M25_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/aligner/GSE138391_M25_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M25_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/aligner/GSE138391_M25_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M13_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/aligner/GSE138391_M13_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M13_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/aligner/GSE138391_M13_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M13_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/aligner/GSE138391_M13_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M19_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M19/aligner/GSE138391_M19_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M19_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M19/aligner/GSE138391_M19_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M19_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M19/aligner/GSE138391_M19_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M22_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M22/aligner/GSE138391_M22_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M22_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M22/aligner/GSE138391_M22_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M22_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M22/aligner/GSE138391_M22_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M3_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M3/aligner/GSE138391_M3_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M3_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M3/aligner/GSE138391_M3_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M3_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M3/aligner/GSE138391_M3_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M5_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M5/aligner/GSE138391_M5_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M5_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M5/aligner/GSE138391_M5_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M5_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M5/aligner/GSE138391_M5_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M29_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M29/aligner/GSE138391_M29_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M29_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M29/aligner/GSE138391_M29_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M29_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M29/aligner/GSE138391_M29_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M31_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M31/aligner/GSE138391_M31_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M31_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M31/aligner/GSE138391_M31_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M31_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M31/aligner/GSE138391_M31_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M7_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M7/aligner/GSE138391_M7_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M7_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M7/aligner/GSE138391_M7_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M7_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M7/aligner/GSE138391_M7_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M15_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M15/aligner/GSE138391_M15_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M15_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M15/aligner/GSE138391_M15_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M15_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M15/aligner/GSE138391_M15_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M24_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M24/aligner/GSE138391_M24_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M24_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M24/aligner/GSE138391_M24_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M24_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M24/aligner/GSE138391_M24_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M11_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M11/aligner/GSE138391_M11_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M11_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M11/aligner/GSE138391_M11_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M11_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M11/aligner/GSE138391_M11_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M2_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M2/aligner/GSE138391_M2_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M2_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M2/aligner/GSE138391_M2_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M2_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M2/aligner/GSE138391_M2_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M30_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M30/aligner/GSE138391_M30_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M30_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M30/aligner/GSE138391_M30_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M30_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M30/aligner/GSE138391_M30_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M12_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M12/aligner/GSE138391_M12_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M12_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M12/aligner/GSE138391_M12_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M12_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M12/aligner/GSE138391_M12_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M23_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M23/aligner/GSE138391_M23_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M23_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M23/aligner/GSE138391_M23_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M23_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M23/aligner/GSE138391_M23_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M8_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M8/aligner/GSE138391_M8_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M8_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M8/aligner/GSE138391_M8_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M8_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M8/aligner/GSE138391_M8_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M18_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M18/aligner/GSE138391_M18_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M18_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M18/aligner/GSE138391_M18_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M18_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M18/aligner/GSE138391_M18_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M32_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M32/aligner/GSE138391_M32_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M32_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M32/aligner/GSE138391_M32_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M32_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M32/aligner/GSE138391_M32_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M1_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M1/aligner/GSE138391_M1_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M1_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M1/aligner/GSE138391_M1_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M1_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M1/aligner/GSE138391_M1_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M9_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M9/aligner/GSE138391_M9_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M9_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M9/aligner/GSE138391_M9_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M9_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M9/aligner/GSE138391_M9_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M21_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M21/aligner/GSE138391_M21_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M21_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M21/aligner/GSE138391_M21_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M21_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M21/aligner/GSE138391_M21_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M16_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M16/aligner/GSE138391_M16_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M16_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M16/aligner/GSE138391_M16_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M16_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M16/aligner/GSE138391_M16_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M10_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M10/aligner/GSE138391_M10_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M10_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M10/aligner/GSE138391_M10_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M10_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M10/aligner/GSE138391_M10_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M4_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M4/aligner/GSE138391_M4_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M4_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M4/aligner/GSE138391_M4_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M4_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M4/aligner/GSE138391_M4_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M20_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M20/aligner/GSE138391_M20_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M20_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M20/aligner/GSE138391_M20_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M20_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M20/aligner/GSE138391_M20_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M17_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M17/aligner/GSE138391_M17_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M17_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M17/aligner/GSE138391_M17_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M17_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M17/aligner/GSE138391_M17_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M27_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M27/aligner/GSE138391_M27_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M27_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M27/aligner/GSE138391_M27_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M27_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M27/aligner/GSE138391_M27_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M14_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M14/aligner/GSE138391_M14_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M14_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M14/aligner/GSE138391_M14_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M14_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M14/aligner/GSE138391_M14_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M6_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M6/aligner/GSE138391_M6_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M6_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M6/aligner/GSE138391_M6_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M6_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M6/aligner/GSE138391_M6_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M26_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M26/aligner/GSE138391_M26_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M26_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M26/aligner/GSE138391_M26_statistics_for_all_accepted_reads.txt Samtools flagstat GSE138391_M26_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M26/aligner/GSE138391_M26_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M28_statistics_for_primary_unique_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M28/aligner/GSE138391_M28_statistics_for_primary_unique_reads.txt Samtools flagstat GSE138391_M28_statistics_for_primary_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M28/aligner/GSE138391_M28_statistics_for_primary_reads.txt Samtools flagstat GSE138391_M28_statistics_for_all_accepted_reads /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M28/aligner/GSE138391_M28_statistics_for_all_accepted_reads.txt STAR SummaryLog GSE138391_M25_GSE138391_M25 /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M25/aligner/GSE138391_M25_GSE138391_M25_Log.final.out STAR SummaryLog GSE138391_M13_GSE138391_M13 /projectnb/wax-dk/max/RK_grant_proposal/GSE138391/SAMPLES/GSE138391_M13/aligner/GSE138391_M13_GSE138391_M13_Log.final.out STAR SummaryLog GSE138391_M19_GSE138391_M19 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