[2023-11-15 10:33:08,554] multiqc [DEBUG ] This is MultiQC v1.11 [2023-11-15 10:33:08,554] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2023-11-15 10:33:08,554] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-11-15 10:33:08,554] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-15 10:33:08,555] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2023-11-15 10:33:08,555] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-11-15 10:33:08,555] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/06_CollectMetrics/ [2023-11-15 10:33:08,852] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-15 10:33:08,852] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/06_CollectMetrics/ [2023-11-15 10:33:08,853] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/14_final_summary/GSE138392_multiqc_report [2023-11-15 10:33:08,853] multiqc [DEBUG ] Template : default [2023-11-15 10:33:08,853] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2023-11-15 10:33:08,853] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2023-11-15 10:33:08,854] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmprog5nzys [2023-11-15 10:33:08,930] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/SAMPLES [2023-11-15 10:33:08,930] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/03_FASTQC [2023-11-15 10:33:08,930] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/06_CollectMetrics [2023-11-15 10:33:09,154] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106540_pass.fastq.gz [2023-11-15 10:33:09,225] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M27_primary_unique.bam [2023-11-15 10:33:09,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M27_primary_unique.bam.bai [2023-11-15 10:33:09,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:09,296] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,259] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,262] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,268] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:10,289] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M27_featureCounts.out [2023-11-15 10:33:11,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M27_metrics [2023-11-15 10:33:11,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M27_metrics [2023-11-15 10:33:11,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M27_metrics [2023-11-15 10:33:11,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106519_pass.fastq.gz [2023-11-15 10:33:11,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M6_primary_unique.bam [2023-11-15 10:33:11,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M6_primary_unique.bam.bai [2023-11-15 10:33:11,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,391] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,391] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,392] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,392] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:11,409] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,345] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,350] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:12,368] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M6_featureCounts.out [2023-11-15 10:33:13,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M6_metrics [2023-11-15 10:33:13,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M6_metrics [2023-11-15 10:33:13,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M6_metrics [2023-11-15 10:33:13,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106545_pass.fastq.gz [2023-11-15 10:33:13,438] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M32_primary_unique.bam [2023-11-15 10:33:13,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M32_primary_unique.bam.bai [2023-11-15 10:33:13,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,495] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,498] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:13,517] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,472] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,476] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:14,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M32_featureCounts.out [2023-11-15 10:33:15,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M32_metrics [2023-11-15 10:33:15,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M32_metrics [2023-11-15 10:33:15,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M32_metrics [2023-11-15 10:33:15,472] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106524_pass.fastq.gz [2023-11-15 10:33:15,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M11_primary_unique.bam [2023-11-15 10:33:15,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M11_primary_unique.bam.bai [2023-11-15 10:33:15,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,581] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:15,603] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:16,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M11_featureCounts.out [2023-11-15 10:33:17,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M11_metrics [2023-11-15 10:33:17,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M11_metrics [2023-11-15 10:33:17,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M11_metrics [2023-11-15 10:33:17,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106541_pass.fastq.gz [2023-11-15 10:33:17,565] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M28_primary_unique.bam.bai [2023-11-15 10:33:17,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M28_primary_unique.bam [2023-11-15 10:33:17,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,605] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,605] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:17,626] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:18,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M28_featureCounts.out [2023-11-15 10:33:19,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M28_metrics [2023-11-15 10:33:19,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M28_metrics [2023-11-15 10:33:19,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M28_metrics [2023-11-15 10:33:19,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106514_pass.fastq.gz [2023-11-15 10:33:19,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M1_primary_unique.bam.bai [2023-11-15 10:33:19,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M1_primary_unique.bam [2023-11-15 10:33:19,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,725] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,728] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:19,746] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,679] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,679] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:20,709] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M1_featureCounts.out [2023-11-15 10:33:21,651] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M1_metrics [2023-11-15 10:33:21,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M1_metrics [2023-11-15 10:33:21,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M1_metrics [2023-11-15 10:33:21,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106522_pass.fastq.gz [2023-11-15 10:33:21,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M9_primary_unique.bam.bai [2023-11-15 10:33:21,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M9_primary_unique.bam [2023-11-15 10:33:21,807] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,810] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,816] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:21,842] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,764] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,766] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,766] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:22,787] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M9_featureCounts.out [2023-11-15 10:33:23,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M9_metrics [2023-11-15 10:33:23,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M9_metrics [2023-11-15 10:33:23,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M9_metrics [2023-11-15 10:33:23,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106526_pass.fastq.gz [2023-11-15 10:33:23,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M13_primary_unique.bam.bai [2023-11-15 10:33:23,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M13_primary_unique.bam [2023-11-15 10:33:23,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,845] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,846] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:23,864] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,827] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,831] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:24,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M13_featureCounts.out [2023-11-15 10:33:25,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M13_metrics [2023-11-15 10:33:25,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M13_metrics [2023-11-15 10:33:25,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M13_metrics [2023-11-15 10:33:25,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106539_pass.fastq.gz [2023-11-15 10:33:25,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M26_primary_unique.bam [2023-11-15 10:33:25,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M26_primary_unique.bam.bai [2023-11-15 10:33:25,904] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,907] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,908] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,908] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,911] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:25,931] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,882] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:26,900] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M26_featureCounts.out [2023-11-15 10:33:27,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M26_metrics [2023-11-15 10:33:27,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M26_metrics [2023-11-15 10:33:27,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M26_metrics [2023-11-15 10:33:27,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106523_pass.fastq.gz [2023-11-15 10:33:27,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M10_primary_unique.bam [2023-11-15 10:33:27,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M10_primary_unique.bam.bai [2023-11-15 10:33:27,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,945] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,945] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:27,966] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:28,905] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M10_featureCounts.out [2023-11-15 10:33:29,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M10_metrics [2023-11-15 10:33:29,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M10_metrics [2023-11-15 10:33:29,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M10_metrics [2023-11-15 10:33:29,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106533_pass.fastq.gz [2023-11-15 10:33:29,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M20_primary_unique.bam [2023-11-15 10:33:29,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M20_primary_unique.bam.bai [2023-11-15 10:33:29,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,959] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,962] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,963] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,963] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,963] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,963] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,963] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:29,982] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,930] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:30,948] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M20_featureCounts.out [2023-11-15 10:33:31,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M20_metrics [2023-11-15 10:33:31,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M20_metrics [2023-11-15 10:33:31,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M20_metrics [2023-11-15 10:33:31,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106534_pass.fastq.gz [2023-11-15 10:33:31,941] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M21_primary_unique.bam.bai [2023-11-15 10:33:31,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M21_primary_unique.bam [2023-11-15 10:33:32,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,029] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,046] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:32,986] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:33,004] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M21_featureCounts.out [2023-11-15 10:33:33,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M21_metrics [2023-11-15 10:33:33,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M21_metrics [2023-11-15 10:33:33,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M21_metrics [2023-11-15 10:33:33,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106520_pass.fastq.gz [2023-11-15 10:33:33,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M7_primary_unique.bam.bai [2023-11-15 10:33:34,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M7_primary_unique.bam [2023-11-15 10:33:34,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:34,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,077] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,077] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,083] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,084] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:35,106] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M7_featureCounts.out [2023-11-15 10:33:36,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M7_metrics [2023-11-15 10:33:36,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M7_metrics [2023-11-15 10:33:36,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M7_metrics [2023-11-15 10:33:36,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106537_pass.fastq.gz [2023-11-15 10:33:36,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M24_primary_unique.bam.bai [2023-11-15 10:33:36,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M24_primary_unique.bam [2023-11-15 10:33:36,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:36,188] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,135] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:37,153] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M24_featureCounts.out [2023-11-15 10:33:38,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M24_metrics [2023-11-15 10:33:38,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M24_metrics [2023-11-15 10:33:38,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M24_metrics [2023-11-15 10:33:38,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106532_pass.fastq.gz [2023-11-15 10:33:38,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M19_primary_unique.bam.bai [2023-11-15 10:33:38,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M19_primary_unique.bam [2023-11-15 10:33:38,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,220] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:38,240] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,188] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:39,206] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M19_featureCounts.out [2023-11-15 10:33:40,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M19_metrics [2023-11-15 10:33:40,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M19_metrics [2023-11-15 10:33:40,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M19_metrics [2023-11-15 10:33:40,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106529_pass.fastq.gz [2023-11-15 10:33:40,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M16_primary_unique.bam.bai [2023-11-15 10:33:40,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M16_primary_unique.bam [2023-11-15 10:33:40,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,327] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,331] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,331] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:40,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:41,305] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M16_featureCounts.out [2023-11-15 10:33:42,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M16_metrics [2023-11-15 10:33:42,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M16_metrics [2023-11-15 10:33:42,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M16_metrics [2023-11-15 10:33:42,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106544_pass.fastq.gz [2023-11-15 10:33:42,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M31_primary_unique.bam.bai [2023-11-15 10:33:42,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M31_primary_unique.bam [2023-11-15 10:33:42,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,367] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:42,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,341] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,341] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,341] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,341] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:43,367] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M31_featureCounts.out [2023-11-15 10:33:44,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M31_metrics [2023-11-15 10:33:44,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M31_metrics [2023-11-15 10:33:44,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M31_metrics [2023-11-15 10:33:44,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106531_pass.fastq.gz [2023-11-15 10:33:44,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M18_primary_unique.bam [2023-11-15 10:33:44,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M18_primary_unique.bam.bai [2023-11-15 10:33:44,436] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,441] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:44,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,418] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,422] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:45,444] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M18_featureCounts.out [2023-11-15 10:33:46,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M18_metrics [2023-11-15 10:33:46,389] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M18_metrics [2023-11-15 10:33:46,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M18_metrics [2023-11-15 10:33:46,440] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106525_pass.fastq.gz [2023-11-15 10:33:46,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M12_primary_unique.bam [2023-11-15 10:33:46,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M12_primary_unique.bam.bai [2023-11-15 10:33:46,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:46,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:47,543] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M12_featureCounts.out [2023-11-15 10:33:48,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M12_metrics [2023-11-15 10:33:48,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M12_metrics [2023-11-15 10:33:48,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M12_metrics [2023-11-15 10:33:48,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106542_pass.fastq.gz [2023-11-15 10:33:48,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M29_primary_unique.bam [2023-11-15 10:33:48,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M29_primary_unique.bam.bai [2023-11-15 10:33:48,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,607] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,607] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,611] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:48,629] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,601] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,602] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:49,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M29_featureCounts.out [2023-11-15 10:33:50,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M29_metrics [2023-11-15 10:33:50,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M29_metrics [2023-11-15 10:33:50,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M29_metrics [2023-11-15 10:33:50,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106528_pass.fastq.gz [2023-11-15 10:33:50,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M15_primary_unique.bam.bai [2023-11-15 10:33:50,718] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M15_primary_unique.bam [2023-11-15 10:33:50,735] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:50,758] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,692] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:51,710] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M15_featureCounts.out [2023-11-15 10:33:52,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M15_metrics [2023-11-15 10:33:52,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M15_metrics [2023-11-15 10:33:52,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M15_metrics [2023-11-15 10:33:52,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106515_pass.fastq.gz [2023-11-15 10:33:52,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M2_primary_unique.bam.bai [2023-11-15 10:33:52,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M2_primary_unique.bam [2023-11-15 10:33:52,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,772] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:52,793] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,714] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,714] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,715] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,715] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,715] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,715] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,715] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:53,732] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M2_featureCounts.out [2023-11-15 10:33:54,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M2_metrics [2023-11-15 10:33:54,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M2_metrics [2023-11-15 10:33:54,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M2_metrics [2023-11-15 10:33:54,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106527_pass.fastq.gz [2023-11-15 10:33:54,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M14_primary_unique.bam.bai [2023-11-15 10:33:54,741] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M14_primary_unique.bam [2023-11-15 10:33:54,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,807] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,807] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:54,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:55,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M14_featureCounts.out [2023-11-15 10:33:56,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M14_metrics [2023-11-15 10:33:56,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M14_metrics [2023-11-15 10:33:56,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M14_metrics [2023-11-15 10:33:56,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106516_pass.fastq.gz [2023-11-15 10:33:56,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M3_primary_unique.bam.bai [2023-11-15 10:33:56,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M3_primary_unique.bam [2023-11-15 10:33:56,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,858] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,858] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,860] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,861] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:56,878] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,809] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,810] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,813] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:57,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M3_featureCounts.out [2023-11-15 10:33:58,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M3_metrics [2023-11-15 10:33:58,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M3_metrics [2023-11-15 10:33:58,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M3_metrics [2023-11-15 10:33:58,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106521_pass.fastq.gz [2023-11-15 10:33:58,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M8_primary_unique.bam [2023-11-15 10:33:58,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M8_primary_unique.bam.bai [2023-11-15 10:33:58,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,959] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,963] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:58,984] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,926] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,929] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,929] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,929] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,930] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,930] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:33:59,948] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M8_featureCounts.out [2023-11-15 10:34:00,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M8_metrics [2023-11-15 10:34:00,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M8_metrics [2023-11-15 10:34:00,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M8_metrics [2023-11-15 10:34:00,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106543_pass.fastq.gz [2023-11-15 10:34:00,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M30_primary_unique.bam [2023-11-15 10:34:01,021] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M30_primary_unique.bam.bai [2023-11-15 10:34:01,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,027] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,027] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,031] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,057] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,996] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,996] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,996] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,996] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:01,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:02,020] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M30_featureCounts.out [2023-11-15 10:34:02,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M30_metrics [2023-11-15 10:34:02,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M30_metrics [2023-11-15 10:34:02,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M30_metrics [2023-11-15 10:34:02,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106518_pass.fastq.gz [2023-11-15 10:34:03,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M5_primary_unique.bam.bai [2023-11-15 10:34:03,078] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M5_primary_unique.bam [2023-11-15 10:34:03,109] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,111] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,111] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,114] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:03,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,066] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:04,086] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M5_featureCounts.out [2023-11-15 10:34:05,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M5_metrics [2023-11-15 10:34:05,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M5_metrics [2023-11-15 10:34:05,008] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M5_metrics [2023-11-15 10:34:05,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106530_pass.fastq.gz [2023-11-15 10:34:05,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M17_primary_unique.bam.bai [2023-11-15 10:34:05,057] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M17_primary_unique.bam [2023-11-15 10:34:05,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,158] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,158] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,158] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,158] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,159] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,159] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,159] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:05,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,117] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,138] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:06,161] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M17_featureCounts.out [2023-11-15 10:34:07,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M17_metrics [2023-11-15 10:34:07,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M17_metrics [2023-11-15 10:34:07,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M17_metrics [2023-11-15 10:34:07,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106517_pass.fastq.gz [2023-11-15 10:34:07,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M4_primary_unique.bam [2023-11-15 10:34:07,202] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M4_primary_unique.bam.bai [2023-11-15 10:34:07,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,208] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,211] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:07,228] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,183] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,183] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,183] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,183] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,184] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,184] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,184] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:08,208] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M4_featureCounts.out [2023-11-15 10:34:09,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M4_metrics [2023-11-15 10:34:09,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M4_metrics [2023-11-15 10:34:09,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M4_metrics [2023-11-15 10:34:09,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106536_pass.fastq.gz [2023-11-15 10:34:09,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M23_primary_unique.bam.bai [2023-11-15 10:34:09,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M23_primary_unique.bam [2023-11-15 10:34:09,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,328] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,328] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,328] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,328] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,328] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:09,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,309] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,309] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,311] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,311] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,312] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,312] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,312] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,312] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,312] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:10,329] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M23_featureCounts.out [2023-11-15 10:34:11,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M23_metrics [2023-11-15 10:34:11,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M23_metrics [2023-11-15 10:34:11,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M23_metrics [2023-11-15 10:34:11,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106538_pass.fastq.gz [2023-11-15 10:34:11,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M25_primary_unique.bam [2023-11-15 10:34:11,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M25_primary_unique.bam.bai [2023-11-15 10:34:11,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:11,456] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,406] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,411] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,411] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,412] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,412] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,412] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,412] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,412] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:12,436] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M25_featureCounts.out [2023-11-15 10:34:13,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M25_metrics [2023-11-15 10:34:13,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M25_metrics [2023-11-15 10:34:13,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M25_metrics [2023-11-15 10:34:13,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4106535_pass.fastq.gz [2023-11-15 10:34:13,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M22_primary_unique.bam.bai [2023-11-15 10:34:13,525] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE138392_M22_primary_unique.bam [2023-11-15 10:34:13,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,552] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,552] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,552] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,552] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,552] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:13,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,542] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,546] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:14,564] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE138392_M22_featureCounts.out [2023-11-15 10:34:15,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE138392_M22_metrics [2023-11-15 10:34:15,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE138392_M22_metrics [2023-11-15 10:34:15,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE138392_M22_metrics [2023-11-15 10:34:15,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-15 10:34:15,571] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-15 10:34:15,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-15 10:34:15,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-15 10:34:15,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-15 10:34:15,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-15 10:34:15,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-15 10:34:15,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-15 10:34:15,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-15 10:34:15,619] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded 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[2023-11-15 10:34:16,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106534_pass_fastqc.html [2023-11-15 10:34:16,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,953] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,954] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106527_pass_fastqc.html [2023-11-15 10:34:16,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it 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10:34:17,055] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106532_pass_fastqc.html [2023-11-15 10:34:17,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106532_pass_fastqc.html [2023-11-15 10:34:17,055] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106532_pass_fastqc.html [2023-11-15 10:34:17,055] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106532_pass_fastqc.html [2023-11-15 10:34:17,055] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106532_pass_fastqc.html [2023-11-15 10:34:17,055] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106532_pass_fastqc.html [2023-11-15 10:34:17,055] multiqc [DEBUG ] File ignored by 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pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106523_pass_fastqc.html [2023-11-15 10:34:17,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106515_pass_fastqc.html [2023-11-15 10:34:17,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106515_pass_fastqc.html [2023-11-15 10:34:17,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106515_pass_fastqc.html [2023-11-15 10:34:17,645] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106515_pass_fastqc.html [2023-11-15 10:34:17,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,739] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,743] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106531_pass_fastqc.html [2023-11-15 10:34:17,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106514_pass_fastqc.html [2023-11-15 10:34:17,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:17,935] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106521_pass_fastqc.html [2023-11-15 10:34:18,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106526_pass_fastqc.html [2023-11-15 10:34:18,033] multiqc [DEBUG ] File ignored by 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[2023-11-15 10:34:18,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106517_pass_fastqc.html [2023-11-15 10:34:18,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106517_pass_fastqc.html [2023-11-15 10:34:18,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106517_pass_fastqc.html [2023-11-15 10:34:18,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106517_pass_fastqc.html [2023-11-15 10:34:18,830] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106517_pass_fastqc.html [2023-11-15 10:34:18,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106517_pass_fastqc.html [2023-11-15 10:34:18,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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10:34:18,925] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106538_pass_fastqc.html [2023-11-15 10:34:18,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106538_pass_fastqc.html [2023-11-15 10:34:18,928] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106538_pass_fastqc.html [2023-11-15 10:34:18,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106538_pass_fastqc.html [2023-11-15 10:34:18,928] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106538_pass_fastqc.html [2023-11-15 10:34:18,928] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106538_pass_fastqc.html [2023-11-15 10:34:18,928] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it 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10:34:19,026] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106533_pass_fastqc.html [2023-11-15 10:34:19,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106533_pass_fastqc.html [2023-11-15 10:34:19,027] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106533_pass_fastqc.html [2023-11-15 10:34:19,027] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106533_pass_fastqc.html [2023-11-15 10:34:19,027] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106533_pass_fastqc.html [2023-11-15 10:34:19,027] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106533_pass_fastqc.html [2023-11-15 10:34:19,027] multiqc [DEBUG ] File ignored by 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] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106537_pass_fastqc.html [2023-11-15 10:34:19,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4106537_pass_fastqc.html [2023-11-15 10:34:19,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4106537_pass_fastqc.html [2023-11-15 10:34:19,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4106537_pass_fastqc.html [2023-11-15 10:34:19,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106528_pass_fastqc.html [2023-11-15 10:34:19,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106528_pass_fastqc.html [2023-11-15 10:34:19,690] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern 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[2023-11-15 10:34:19,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4106525_pass_fastqc.html [2023-11-15 10:34:19,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4106525_pass_fastqc.html [2023-11-15 10:34:19,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106525_pass_fastqc.html [2023-11-15 10:34:19,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106525_pass_fastqc.html [2023-11-15 10:34:19,905] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106525_pass_fastqc.html [2023-11-15 10:34:19,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106525_pass_fastqc.html [2023-11-15 10:34:19,905] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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10:34:20,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4106540_pass_fastqc.html [2023-11-15 10:34:20,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4106540_pass_fastqc.html [2023-11-15 10:34:20,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4106540_pass_fastqc.html [2023-11-15 10:34:20,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4106540_pass_fastqc.html [2023-11-15 10:34:20,020] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4106540_pass_fastqc.html [2023-11-15 10:34:20,020] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4106540_pass_fastqc.html [2023-11-15 10:34:20,020] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it 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Step_06_GSE138392_GSE138392_M8.o2557025 [2023-11-15 10:34:20,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M8.o2557025 [2023-11-15 10:34:20,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M8.o2557025 [2023-11-15 10:34:20,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M8.o2557025 [2023-11-15 10:34:20,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M24.o2557041 [2023-11-15 10:34:20,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M24.o2557041 [2023-11-15 10:34:20,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M24.o2557041 [2023-11-15 10:34:20,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M24.o2557041 [2023-11-15 10:34:20,561] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M24.o2557041 [2023-11-15 10:34:20,574] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M27.o2557044 [2023-11-15 10:34:20,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M27.o2557044 [2023-11-15 10:34:20,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M27.o2557044 [2023-11-15 10:34:20,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M27.o2557044 [2023-11-15 10:34:20,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M27.o2557044 [2023-11-15 10:34:20,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M23.o2557040 [2023-11-15 10:34:20,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M23.o2557040 [2023-11-15 10:34:20,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M23.o2557040 [2023-11-15 10:34:20,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M23.o2557040 [2023-11-15 10:34:20,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M23.o2557040 [2023-11-15 10:34:20,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M15.o2557032 [2023-11-15 10:34:20,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M15.o2557032 [2023-11-15 10:34:20,620] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M15.o2557032 [2023-11-15 10:34:20,620] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M15.o2557032 [2023-11-15 10:34:20,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M15.o2557032 [2023-11-15 10:34:20,634] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M25.o2557042 [2023-11-15 10:34:20,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M25.o2557042 [2023-11-15 10:34:20,636] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M25.o2557042 [2023-11-15 10:34:20,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M25.o2557042 [2023-11-15 10:34:20,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M25.o2557042 [2023-11-15 10:34:20,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M13.o2557030 [2023-11-15 10:34:20,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M13.o2557030 [2023-11-15 10:34:20,650] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M13.o2557030 [2023-11-15 10:34:20,650] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M13.o2557030 [2023-11-15 10:34:20,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M13.o2557030 [2023-11-15 10:34:20,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M20.o2557037 [2023-11-15 10:34:20,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M20.o2557037 [2023-11-15 10:34:20,665] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M20.o2557037 [2023-11-15 10:34:20,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M20.o2557037 [2023-11-15 10:34:20,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M20.o2557037 [2023-11-15 10:34:20,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M18.o2557035 [2023-11-15 10:34:20,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M18.o2557035 [2023-11-15 10:34:20,683] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M18.o2557035 [2023-11-15 10:34:20,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M18.o2557035 [2023-11-15 10:34:20,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M18.o2557035 [2023-11-15 10:34:20,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M6.o2557023 [2023-11-15 10:34:20,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M6.o2557023 [2023-11-15 10:34:20,705] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M6.o2557023 [2023-11-15 10:34:20,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M6.o2557023 [2023-11-15 10:34:20,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M6.o2557023 [2023-11-15 10:34:20,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M17.o2557034 [2023-11-15 10:34:20,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M17.o2557034 [2023-11-15 10:34:20,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M17.o2557034 [2023-11-15 10:34:20,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M17.o2557034 [2023-11-15 10:34:20,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M17.o2557034 [2023-11-15 10:34:20,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M3.o2557020 [2023-11-15 10:34:20,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M3.o2557020 [2023-11-15 10:34:20,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M3.o2557020 [2023-11-15 10:34:20,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M3.o2557020 [2023-11-15 10:34:20,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M3.o2557020 [2023-11-15 10:34:20,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M30.o2557047 [2023-11-15 10:34:20,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M30.o2557047 [2023-11-15 10:34:20,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M30.o2557047 [2023-11-15 10:34:20,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M30.o2557047 [2023-11-15 10:34:20,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M30.o2557047 [2023-11-15 10:34:20,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M31.o2557048 [2023-11-15 10:34:20,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M31.o2557048 [2023-11-15 10:34:20,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M31.o2557048 [2023-11-15 10:34:20,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M31.o2557048 [2023-11-15 10:34:20,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M31.o2557048 [2023-11-15 10:34:20,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M11.o2557028 [2023-11-15 10:34:20,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M11.o2557028 [2023-11-15 10:34:20,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M11.o2557028 [2023-11-15 10:34:20,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M11.o2557028 [2023-11-15 10:34:20,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE138392_GSE138392_M11.o2557028 [2023-11-15 10:34:20,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-15 10:34:20,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-15 10:34:20,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2023-11-15 10:34:20,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,850] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:20,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-11-15 10:34:21,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-15 10:34:21,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-15 10:34:21,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-15 10:34:21,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-15 10:34:21,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-15 10:34:21,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-15 10:34:21,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-15 10:34:21,665] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-15 10:34:21,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-15 10:34:21,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-15 10:34:22,591] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-15 10:34:22,592] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-15 10:34:22,595] multiqc [DEBUG ] No samples found: custom_content [2023-11-15 10:34:22,602] multiqc [DEBUG ] No samples found: ccs [2023-11-15 10:34:22,608] multiqc [DEBUG ] No samples found: ngsderive [2023-11-15 10:34:22,612] multiqc [DEBUG ] No samples found: purple [2023-11-15 10:34:22,619] multiqc [DEBUG ] No samples found: conpair [2023-11-15 10:34:22,628] multiqc [DEBUG ] No samples found: lima [2023-11-15 10:34:22,635] multiqc [DEBUG ] No samples found: peddy [2023-11-15 10:34:22,641] multiqc [DEBUG ] No samples found: somalier [2023-11-15 10:34:22,646] multiqc [DEBUG ] No samples found: methylQA [2023-11-15 10:34:22,654] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2023-11-15 10:34:22,654] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2023-11-15 10:34:22,654] multiqc [DEBUG ] No samples found: mosdepth [2023-11-15 10:34:22,659] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-15 10:34:22,662] multiqc [DEBUG ] No samples found: qualimap [2023-11-15 10:34:22,667] multiqc [DEBUG ] No samples found: preseq [2023-11-15 10:34:22,672] multiqc [DEBUG ] No samples found: quast [2023-11-15 10:34:22,677] multiqc [DEBUG ] No samples found: qorts [2023-11-15 10:34:22,681] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-15 10:34:22,686] multiqc [DEBUG ] No samples found: rockhopper [2023-11-15 10:34:22,691] multiqc [DEBUG ] No samples found: rsem [2023-11-15 10:34:22,760] multiqc.modules.rseqc.rseqc [INFO ] Found 32 infer_experiment reports [2023-11-15 10:34:22,769] multiqc [DEBUG ] No samples found: busco [2023-11-15 10:34:22,774] multiqc [DEBUG ] No samples found: bustools [2023-11-15 10:34:22,779] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-15 10:34:22,784] multiqc [DEBUG ] No samples found: gffcompare [2023-11-15 10:34:22,789] multiqc [DEBUG ] No samples found: disambiguate [2023-11-15 10:34:22,794] multiqc [DEBUG ] No samples found: supernova [2023-11-15 10:34:22,807] multiqc [DEBUG ] No samples found: deeptools [2023-11-15 10:34:22,817] multiqc [DEBUG ] No samples found: sargasso [2023-11-15 10:34:22,824] multiqc [DEBUG ] No samples found: verifybamid [2023-11-15 10:34:22,830] multiqc [DEBUG ] No samples found: mirtrace [2023-11-15 10:34:22,835] multiqc [DEBUG ] No samples found: happy [2023-11-15 10:34:22,840] multiqc [DEBUG ] No samples found: mirtop [2023-11-15 10:34:22,845] multiqc [DEBUG ] No samples found: sambamba [2023-11-15 10:34:22,852] multiqc [DEBUG ] No samples found: homer [2023-11-15 10:34:22,857] multiqc [DEBUG ] No samples found: hops [2023-11-15 10:34:22,861] multiqc [DEBUG ] No samples found: macs2 [2023-11-15 10:34:22,866] multiqc [DEBUG ] No samples found: theta2 [2023-11-15 10:34:22,871] multiqc [DEBUG ] No samples found: snpeff [2023-11-15 10:34:22,879] multiqc [DEBUG ] No samples found: gatk [2023-11-15 10:34:22,883] multiqc [DEBUG ] No samples found: htseq [2023-11-15 10:34:22,890] multiqc [DEBUG ] No samples found: bcftools [2023-11-15 10:34:22,903] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M27_sorted [2023-11-15 10:34:22,906] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M6_sorted [2023-11-15 10:34:22,909] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M32_sorted [2023-11-15 10:34:22,912] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M11_sorted [2023-11-15 10:34:22,915] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M28_sorted [2023-11-15 10:34:22,918] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M1_sorted [2023-11-15 10:34:22,921] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M9_sorted [2023-11-15 10:34:22,924] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M13_sorted [2023-11-15 10:34:22,927] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M26_sorted [2023-11-15 10:34:22,931] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M10_sorted [2023-11-15 10:34:22,934] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M20_sorted [2023-11-15 10:34:22,937] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M21_sorted [2023-11-15 10:34:22,940] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M7_sorted [2023-11-15 10:34:22,943] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M24_sorted [2023-11-15 10:34:22,946] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M19_sorted [2023-11-15 10:34:22,949] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M16_sorted [2023-11-15 10:34:22,952] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M31_sorted [2023-11-15 10:34:22,955] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M18_sorted [2023-11-15 10:34:22,959] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M12_sorted [2023-11-15 10:34:22,962] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M29_sorted [2023-11-15 10:34:22,965] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M15_sorted [2023-11-15 10:34:22,968] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M2_sorted [2023-11-15 10:34:22,971] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M14_sorted [2023-11-15 10:34:22,974] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M3_sorted [2023-11-15 10:34:22,977] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M8_sorted [2023-11-15 10:34:22,981] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M30_sorted [2023-11-15 10:34:22,984] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M5_sorted [2023-11-15 10:34:22,987] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M17_sorted [2023-11-15 10:34:22,989] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M4_sorted [2023-11-15 10:34:22,991] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M23_sorted [2023-11-15 10:34:22,992] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M25_sorted [2023-11-15 10:34:22,993] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE138392_M22_sorted [2023-11-15 10:34:22,994] multiqc.modules.featureCounts.feature_counts [INFO ] Found 32 reports [2023-11-15 10:34:23,011] multiqc [DEBUG ] No samples found: fgbio [2023-11-15 10:34:23,025] multiqc [DEBUG ] No samples found: dragen [2023-11-15 10:34:23,030] multiqc [DEBUG ] No samples found: dedup [2023-11-15 10:34:23,035] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-15 10:34:23,066] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-15 10:34:23,074] multiqc [DEBUG ] No samples found: jcvi [2023-11-15 10:34:23,078] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-15 10:34:23,134] multiqc.modules.picard.picard [INFO ] Found 32 RnaSeqMetrics reports [2023-11-15 10:34:23,139] multiqc [DEBUG ] No samples found: vep [2023-11-15 10:34:23,147] multiqc [DEBUG ] No samples found: sentieon [2023-11-15 10:34:23,151] multiqc [DEBUG ] No samples found: prokka [2023-11-15 10:34:23,157] multiqc [DEBUG ] No samples found: qc3C [2023-11-15 10:34:23,162] multiqc [DEBUG ] No samples found: nanostat [2023-11-15 10:34:23,168] multiqc [DEBUG ] No samples found: samblaster [2023-11-15 10:34:23,260] multiqc.modules.samtools.samtools [INFO ] Found 96 flagstat reports [2023-11-15 10:34:23,265] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-15 10:34:23,269] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2023-11-15 10:34:23,275] multiqc [DEBUG ] No samples found: bamtools [2023-11-15 10:34:23,280] multiqc [DEBUG ] No samples found: jellyfish [2023-11-15 10:34:23,288] multiqc [DEBUG ] No samples found: vcftools [2023-11-15 10:34:23,293] multiqc [DEBUG ] No samples found: longranger [2023-11-15 10:34:23,298] multiqc [DEBUG ] No samples found: stacks [2023-11-15 10:34:23,303] multiqc [DEBUG ] No samples found: varscan2 [2023-11-15 10:34:23,308] multiqc [DEBUG ] No samples found: snippy [2023-11-15 10:34:23,324] multiqc [DEBUG ] No samples found: bbmap [2023-11-15 10:34:23,329] multiqc [DEBUG ] No samples found: bismark [2023-11-15 10:34:23,335] multiqc [DEBUG ] No samples found: biscuit [2023-11-15 10:34:23,340] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-15 10:34:23,345] multiqc [DEBUG ] No samples found: hicup [2023-11-15 10:34:23,350] multiqc [DEBUG ] No samples found: hicpro [2023-11-15 10:34:23,355] multiqc [DEBUG ] No samples found: salmon [2023-11-15 10:34:23,359] multiqc [DEBUG ] No samples found: kallisto [2023-11-15 10:34:23,364] multiqc [DEBUG ] No samples found: slamdunk [2023-11-15 10:34:23,390] multiqc.modules.star.star [INFO ] Found 32 reports [2023-11-15 10:34:23,396] multiqc [DEBUG ] No samples found: hisat2 [2023-11-15 10:34:23,401] multiqc [DEBUG ] No samples found: tophat [2023-11-15 10:34:23,406] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-15 10:34:23,411] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-15 10:34:23,416] multiqc [DEBUG ] No samples found: snpsplit [2023-11-15 10:34:23,421] multiqc [DEBUG ] No samples found: odgi [2023-11-15 10:34:23,426] multiqc [DEBUG ] No samples found: pangolin [2023-11-15 10:34:23,431] multiqc [DEBUG ] No samples found: kat [2023-11-15 10:34:23,436] multiqc [DEBUG ] No samples found: leehom [2023-11-15 10:34:23,441] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-15 10:34:23,446] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-15 10:34:23,450] multiqc [DEBUG ] No samples found: cutadapt [2023-11-15 10:34:23,455] multiqc [DEBUG ] No samples found: flexbar [2023-11-15 10:34:23,460] multiqc [DEBUG ] No samples found: kaiju [2023-11-15 10:34:23,465] multiqc [DEBUG ] No samples found: kraken [2023-11-15 10:34:23,470] multiqc [DEBUG ] No samples found: malt [2023-11-15 10:34:23,474] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-15 10:34:23,479] multiqc [DEBUG ] No samples found: sickle [2023-11-15 10:34:23,484] multiqc [DEBUG ] No samples found: skewer [2023-11-15 10:34:23,489] multiqc [DEBUG ] No samples found: sortmerna [2023-11-15 10:34:23,494] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-15 10:34:23,498] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-15 10:34:23,503] multiqc [DEBUG ] No samples found: afterqc [2023-11-15 10:34:23,508] multiqc [DEBUG ] No samples found: fastp [2023-11-15 10:34:23,591] multiqc.modules.fastqc.fastqc [INFO ] Found 32 reports [2023-11-15 10:34:23,956] multiqc [DEBUG ] No samples found: pychopper [2023-11-15 10:34:23,962] multiqc [DEBUG ] No samples found: pycoqc [2023-11-15 10:34:23,967] multiqc [DEBUG ] No samples found: minionqc [2023-11-15 10:34:23,972] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-15 10:34:23,977] multiqc [DEBUG ] No samples found: clusterflow [2023-11-15 10:34:23,982] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-15 10:34:23,987] multiqc [DEBUG ] No samples found: bclconvert [2023-11-15 10:34:23,992] multiqc [DEBUG ] No samples found: interop [2023-11-15 10:34:23,998] multiqc [DEBUG ] No samples found: ivar [2023-11-15 10:34:24,003] multiqc [DEBUG ] No samples found: flash [2023-11-15 10:34:24,008] multiqc [DEBUG ] No samples found: seqyclean [2023-11-15 10:34:24,013] multiqc [DEBUG ] No samples found: optitype [2023-11-15 10:34:24,105] multiqc [INFO ] Compressing plot data [2023-11-15 10:34:24,617] multiqc [INFO ] Report : multiqc_report.html [2023-11-15 10:34:24,617] multiqc [INFO ] Data : multiqc_data [2023-11-15 10:34:24,617] multiqc [DEBUG ] Moving data file from '/scratch/tmprog5nzys/multiqc_data' to '/projectnb/wax-dk/max/RK_grant_proposal/GSE138392/Scripts/14_final_summary/GSE138392_multiqc_report/multiqc_data' [2023-11-15 10:34:24,743] multiqc [INFO ] MultiQC complete