[2023-11-14 23:24:48,227] multiqc [DEBUG ] This is MultiQC v1.11 [2023-11-14 23:24:48,227] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2023-11-14 23:24:48,227] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2023-11-14 23:24:48,228] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-14 23:24:48,229] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/14_final_summary/Scripts/multiqc_config.yaml [2023-11-14 23:24:48,229] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2023-11-14 23:24:48,230] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/06_CollectMetrics/ [2023-11-14 23:24:48,552] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-14 23:24:48,553] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/14_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/ /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/06_CollectMetrics/ [2023-11-14 23:24:48,553] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/14_final_summary/multiqc_report [2023-11-14 23:24:48,553] multiqc [DEBUG ] Template : default [2023-11-14 23:24:48,553] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2023-11-14 23:24:48,554] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2023-11-14 23:24:48,563] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpx3xy1_dg [2023-11-14 23:24:48,899] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES [2023-11-14 23:24:48,899] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC [2023-11-14 23:24:48,899] multiqc [INFO ] Search path : /projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/06_CollectMetrics [2023-11-14 23:24:48,999] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435409_pass.fastq.gz [2023-11-14 23:24:49,090] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M8_primary_unique.bam.bai [2023-11-14 23:24:49,090] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M8_primary_unique.bam [2023-11-14 23:24:49,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,128] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,129] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:49,147] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,094] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:50,112] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M8_featureCounts.out [2023-11-14 23:24:51,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M8_metrics [2023-11-14 23:24:51,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M8_metrics [2023-11-14 23:24:51,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M8_metrics [2023-11-14 23:24:51,098] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435402_pass.fastq.gz [2023-11-14 23:24:51,147] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M1_primary_unique.bam.bai [2023-11-14 23:24:51,148] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M1_primary_unique.bam [2023-11-14 23:24:51,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,177] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,180] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:51,198] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:52,178] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M1_featureCounts.out [2023-11-14 23:24:53,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M1_metrics [2023-11-14 23:24:53,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M1_metrics [2023-11-14 23:24:53,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M1_metrics [2023-11-14 23:24:53,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435408_pass.fastq.gz [2023-11-14 23:24:53,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M7_primary_unique.bam [2023-11-14 23:24:53,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M7_primary_unique.bam.bai [2023-11-14 23:24:53,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,277] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,277] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:53,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,270] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:54,290] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M7_featureCounts.out [2023-11-14 23:24:55,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M7_metrics [2023-11-14 23:24:55,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M7_metrics [2023-11-14 23:24:55,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M7_metrics [2023-11-14 23:24:55,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435410_pass.fastq.gz [2023-11-14 23:24:55,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M9_primary_unique.bam.bai [2023-11-14 23:24:55,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M9_primary_unique.bam [2023-11-14 23:24:55,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:55,376] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,302] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,306] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,306] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:56,325] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M9_featureCounts.out [2023-11-14 23:24:57,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M9_metrics [2023-11-14 23:24:57,310] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M9_metrics [2023-11-14 23:24:57,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M9_metrics [2023-11-14 23:24:57,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435405_pass.fastq.gz [2023-11-14 23:24:57,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M4_primary_unique.bam.bai [2023-11-14 23:24:57,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M4_primary_unique.bam [2023-11-14 23:24:57,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:57,453] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,357] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,371] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,377] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,377] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,377] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,377] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,377] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,378] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,378] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:58,401] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M4_featureCounts.out [2023-11-14 23:24:59,277] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M4_metrics [2023-11-14 23:24:59,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M4_metrics [2023-11-14 23:24:59,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M4_metrics [2023-11-14 23:24:59,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435403_pass.fastq.gz [2023-11-14 23:24:59,345] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M2_primary_unique.bam [2023-11-14 23:24:59,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M2_primary_unique.bam.bai [2023-11-14 23:24:59,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,410] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,413] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:24:59,432] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,357] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,362] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,363] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:00,381] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M2_featureCounts.out [2023-11-14 23:25:01,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M2_metrics [2023-11-14 23:25:01,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M2_metrics [2023-11-14 23:25:01,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M2_metrics [2023-11-14 23:25:01,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435406_pass.fastq.gz [2023-11-14 23:25:01,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M5_primary_unique.bam [2023-11-14 23:25:01,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M5_primary_unique.bam.bai [2023-11-14 23:25:01,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,441] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,444] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,444] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,445] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,445] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:01,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:02,491] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M5_featureCounts.out [2023-11-14 23:25:03,437] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M5_metrics [2023-11-14 23:25:03,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M5_metrics [2023-11-14 23:25:03,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M5_metrics [2023-11-14 23:25:03,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435404_pass.fastq.gz [2023-11-14 23:25:03,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M3_primary_unique.bam.bai [2023-11-14 23:25:03,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M3_primary_unique.bam [2023-11-14 23:25:03,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,610] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:03,629] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,591] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:04,613] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M3_featureCounts.out [2023-11-14 23:25:05,560] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M3_metrics [2023-11-14 23:25:05,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M3_metrics [2023-11-14 23:25:05,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M3_metrics [2023-11-14 23:25:05,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435412_pass.fastq.gz [2023-11-14 23:25:05,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M11_primary_unique.bam [2023-11-14 23:25:05,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M11_primary_unique.bam.bai [2023-11-14 23:25:05,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:05,693] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:06,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M11_featureCounts.out [2023-11-14 23:25:07,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M11_metrics [2023-11-14 23:25:07,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M11_metrics [2023-11-14 23:25:07,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M11_metrics [2023-11-14 23:25:07,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435407_pass.fastq.gz [2023-11-14 23:25:07,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M6_primary_unique.bam [2023-11-14 23:25:07,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M6_primary_unique.bam.bai [2023-11-14 23:25:07,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,752] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:07,771] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,718] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,719] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:08,743] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M6_featureCounts.out [2023-11-14 23:25:09,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M6_metrics [2023-11-14 23:25:09,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M6_metrics [2023-11-14 23:25:09,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M6_metrics [2023-11-14 23:25:09,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSM4435411_pass.fastq.gz [2023-11-14 23:25:09,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M10_primary_unique.bam [2023-11-14 23:25:09,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: GSE147609_M10_primary_unique.bam.bai [2023-11-14 23:25:09,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,754] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:09,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,680] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,681] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:10,697] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE147609_M10_featureCounts.out [2023-11-14 23:25:11,582] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE147609_M10_metrics [2023-11-14 23:25:11,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE147609_M10_metrics [2023-11-14 23:25:11,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE147609_M10_metrics [2023-11-14 23:25:11,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:25:11,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:25:11,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:25:11,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:25:11,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:25:11,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:25:11,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:25:11,655] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:25:11,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:25:11,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:25:11,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:25:11,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:25:11,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2023-11-14 23:25:11,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2023-11-14 23:25:11,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2023-11-14 23:25:11,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M2.o2555415 [2023-11-14 23:25:11,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M2.o2555415 [2023-11-14 23:25:11,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M2.o2555415 [2023-11-14 23:25:11,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M3.o2555416 [2023-11-14 23:25:11,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M3.o2555416 [2023-11-14 23:25:11,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M3.o2555416 [2023-11-14 23:25:11,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M6.o2555419 [2023-11-14 23:25:11,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M6.o2555419 [2023-11-14 23:25:11,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M6.o2555419 [2023-11-14 23:25:11,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M11.o2555424 [2023-11-14 23:25:11,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M11.o2555424 [2023-11-14 23:25:11,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M11.o2555424 [2023-11-14 23:25:11,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M8.o2555421 [2023-11-14 23:25:11,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M8.o2555421 [2023-11-14 23:25:11,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M8.o2555421 [2023-11-14 23:25:11,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M4.o2555417 [2023-11-14 23:25:11,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M4.o2555417 [2023-11-14 23:25:11,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M4.o2555417 [2023-11-14 23:25:11,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M9.o2555422 [2023-11-14 23:25:11,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M9.o2555422 [2023-11-14 23:25:11,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M9.o2555422 [2023-11-14 23:25:11,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M5.o2555418 [2023-11-14 23:25:11,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M5.o2555418 [2023-11-14 23:25:11,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M5.o2555418 [2023-11-14 23:25:11,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M7.o2555420 [2023-11-14 23:25:11,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M7.o2555420 [2023-11-14 23:25:11,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M7.o2555420 [2023-11-14 23:25:11,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M1.o2555414 [2023-11-14 23:25:11,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M1.o2555414 [2023-11-14 23:25:11,877] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M1.o2555414 [2023-11-14 23:25:11,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M10.o2555423 [2023-11-14 23:25:11,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M10.o2555423 [2023-11-14 23:25:11,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE147609_GSE147609_M10.o2555423 [2023-11-14 23:25:12,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,171] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4435402_pass_fastqc.html [2023-11-14 23:25:12,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,325] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4435409_pass_fastqc.html [2023-11-14 23:25:12,455] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4435411_pass_fastqc.html [2023-11-14 23:25:12,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4435411_pass_fastqc.html [2023-11-14 23:25:12,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4435411_pass_fastqc.html [2023-11-14 23:25:12,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4435411_pass_fastqc.html [2023-11-14 23:25:12,463] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4435411_pass_fastqc.html [2023-11-14 23:25:12,463] multiqc [DEBUG ] File ignored by longranger/invocation because it 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File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4435412_pass_fastqc.html [2023-11-14 23:25:12,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM4435412_pass_fastqc.html [2023-11-14 23:25:12,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4435408_pass_fastqc.html [2023-11-14 23:25:12,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4435408_pass_fastqc.html [2023-11-14 23:25:12,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4435408_pass_fastqc.html [2023-11-14 23:25:12,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4435408_pass_fastqc.html [2023-11-14 23:25:12,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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23:25:12,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM4435403_pass_fastqc.html [2023-11-14 23:25:12,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM4435403_pass_fastqc.html [2023-11-14 23:25:12,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4435403_pass_fastqc.html [2023-11-14 23:25:12,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4435403_pass_fastqc.html [2023-11-14 23:25:12,996] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4435403_pass_fastqc.html [2023-11-14 23:25:12,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4435403_pass_fastqc.html [2023-11-14 23:25:12,996] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern 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23:25:13,113] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM4435405_pass_fastqc.html [2023-11-14 23:25:13,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM4435405_pass_fastqc.html [2023-11-14 23:25:13,118] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4435405_pass_fastqc.html [2023-11-14 23:25:13,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4435405_pass_fastqc.html [2023-11-14 23:25:13,118] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4435405_pass_fastqc.html [2023-11-14 23:25:13,118] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4435405_pass_fastqc.html [2023-11-14 23:25:13,118] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it 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23:25:13,244] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM4435410_pass_fastqc.html [2023-11-14 23:25:13,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM4435410_pass_fastqc.html [2023-11-14 23:25:13,244] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM4435410_pass_fastqc.html [2023-11-14 23:25:13,244] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM4435410_pass_fastqc.html [2023-11-14 23:25:13,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM4435410_pass_fastqc.html [2023-11-14 23:25:13,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM4435410_pass_fastqc.html [2023-11-14 23:25:13,245] multiqc [DEBUG ] File ignored by 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because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:25:13,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2023-11-14 23:25:13,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-11-14 23:25:13,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-11-14 23:25:13,632] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-11-14 23:25:13,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-11-14 23:25:13,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2023-11-14 23:25:13,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:25:13,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:25:13,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2023-11-14 23:25:13,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:25:13,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2023-11-14 23:25:13,686] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M5.o2556741 [2023-11-14 23:25:13,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M5.o2556741 [2023-11-14 23:25:13,689] 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it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M1.o2556737 [2023-11-14 23:25:13,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M1.o2556737 [2023-11-14 23:25:13,840] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M1.o2556737 [2023-11-14 23:25:13,840] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M1.o2556737 [2023-11-14 23:25:13,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M1.o2556737 [2023-11-14 23:25:13,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M9.o2556745 [2023-11-14 23:25:13,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M9.o2556745 [2023-11-14 23:25:13,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M9.o2556745 [2023-11-14 23:25:13,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M9.o2556745 [2023-11-14 23:25:13,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M9.o2556745 [2023-11-14 23:25:13,906] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M2.o2556738 [2023-11-14 23:25:13,909] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M2.o2556738 [2023-11-14 23:25:13,909] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M2.o2556738 [2023-11-14 23:25:13,909] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M2.o2556738 [2023-11-14 23:25:13,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M2.o2556738 [2023-11-14 23:25:13,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M4.o2556740 [2023-11-14 23:25:13,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M4.o2556740 [2023-11-14 23:25:13,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M4.o2556740 [2023-11-14 23:25:13,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M4.o2556740 [2023-11-14 23:25:13,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M4.o2556740 [2023-11-14 23:25:13,977] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M7.o2556743 [2023-11-14 23:25:13,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M7.o2556743 [2023-11-14 23:25:13,980] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M7.o2556743 [2023-11-14 23:25:13,980] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M7.o2556743 [2023-11-14 23:25:13,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M7.o2556743 [2023-11-14 23:25:14,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M3.o2556739 [2023-11-14 23:25:14,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M3.o2556739 [2023-11-14 23:25:14,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M3.o2556739 [2023-11-14 23:25:14,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M3.o2556739 [2023-11-14 23:25:14,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M3.o2556739 [2023-11-14 23:25:14,052] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M8.o2556744 [2023-11-14 23:25:14,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M8.o2556744 [2023-11-14 23:25:14,056] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M8.o2556744 [2023-11-14 23:25:14,056] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M8.o2556744 [2023-11-14 23:25:14,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE147609_GSE147609_M8.o2556744 [2023-11-14 23:25:14,108] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,110] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,113] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,114] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,114] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,114] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2023-11-14 23:25:14,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:25:14,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:25:14,889] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:25:14,889] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:25:14,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2023-11-14 23:25:14,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:25:14,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:25:14,938] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:25:14,938] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:25:14,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2023-11-14 23:25:17,452] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 23:25:17,466] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2023-11-14 23:25:17,470] multiqc [DEBUG ] No samples found: custom_content [2023-11-14 23:25:17,480] multiqc [DEBUG ] No samples found: ccs [2023-11-14 23:25:17,501] multiqc [DEBUG ] No samples found: ngsderive [2023-11-14 23:25:17,510] multiqc [DEBUG ] No samples found: purple [2023-11-14 23:25:17,517] multiqc [DEBUG ] No samples found: conpair [2023-11-14 23:25:17,546] multiqc [DEBUG ] No samples found: lima [2023-11-14 23:25:17,570] multiqc [DEBUG ] No samples found: peddy [2023-11-14 23:25:17,580] multiqc [DEBUG ] No samples found: somalier [2023-11-14 23:25:17,606] multiqc [DEBUG ] No samples found: methylQA [2023-11-14 23:25:17,631] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2023-11-14 23:25:17,631] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2023-11-14 23:25:17,631] multiqc [DEBUG ] No samples found: mosdepth [2023-11-14 23:25:17,641] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-14 23:25:17,665] multiqc [DEBUG ] No samples found: qualimap [2023-11-14 23:25:17,691] multiqc [DEBUG ] No samples found: preseq [2023-11-14 23:25:17,717] multiqc [DEBUG ] No samples found: quast [2023-11-14 23:25:17,736] multiqc [DEBUG ] No samples found: qorts [2023-11-14 23:25:17,768] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-14 23:25:17,792] multiqc [DEBUG ] No samples found: rockhopper [2023-11-14 23:25:17,817] multiqc [DEBUG ] No samples found: rsem [2023-11-14 23:25:17,870] multiqc.modules.rseqc.rseqc [INFO ] Found 11 infer_experiment reports [2023-11-14 23:25:17,880] multiqc [DEBUG ] No samples found: busco [2023-11-14 23:25:17,886] multiqc [DEBUG ] No samples found: bustools [2023-11-14 23:25:17,907] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-14 23:25:17,928] multiqc [DEBUG ] No samples found: gffcompare [2023-11-14 23:25:17,937] multiqc [DEBUG ] No samples found: disambiguate [2023-11-14 23:25:17,963] multiqc [DEBUG ] No samples found: supernova [2023-11-14 23:25:18,024] multiqc [DEBUG ] No samples found: deeptools [2023-11-14 23:25:18,044] multiqc [DEBUG ] No samples found: sargasso [2023-11-14 23:25:18,073] multiqc [DEBUG ] No samples found: verifybamid [2023-11-14 23:25:18,099] multiqc [DEBUG ] No samples found: mirtrace [2023-11-14 23:25:18,110] multiqc [DEBUG ] No samples found: happy [2023-11-14 23:25:18,118] multiqc [DEBUG ] No samples found: mirtop [2023-11-14 23:25:18,136] multiqc [DEBUG ] No samples found: sambamba [2023-11-14 23:25:18,147] multiqc [DEBUG ] No samples found: homer [2023-11-14 23:25:18,168] multiqc [DEBUG ] No samples found: hops [2023-11-14 23:25:18,178] multiqc [DEBUG ] No samples found: macs2 [2023-11-14 23:25:18,185] multiqc [DEBUG ] No samples found: theta2 [2023-11-14 23:25:18,202] multiqc [DEBUG ] No samples found: snpeff [2023-11-14 23:25:18,225] multiqc [DEBUG ] No samples found: gatk [2023-11-14 23:25:18,234] multiqc [DEBUG ] No samples found: htseq [2023-11-14 23:25:18,244] multiqc [DEBUG ] No samples found: bcftools [2023-11-14 23:25:18,264] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M8_sorted [2023-11-14 23:25:18,266] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M1_sorted [2023-11-14 23:25:18,267] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M7_sorted [2023-11-14 23:25:18,268] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M9_sorted [2023-11-14 23:25:18,269] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M4_sorted [2023-11-14 23:25:18,270] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M2_sorted [2023-11-14 23:25:18,271] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M5_sorted [2023-11-14 23:25:18,272] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M3_sorted [2023-11-14 23:25:18,273] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M11_sorted [2023-11-14 23:25:18,274] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M6_sorted [2023-11-14 23:25:18,275] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE147609_M10_sorted [2023-11-14 23:25:18,275] multiqc.modules.featureCounts.feature_counts [INFO ] Found 11 reports [2023-11-14 23:25:18,307] multiqc [DEBUG ] No samples found: fgbio [2023-11-14 23:25:18,388] multiqc [DEBUG ] No samples found: dragen [2023-11-14 23:25:18,411] multiqc [DEBUG ] No samples found: dedup [2023-11-14 23:25:18,434] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-14 23:25:18,584] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-14 23:25:18,609] multiqc [DEBUG ] No samples found: jcvi [2023-11-14 23:25:18,619] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-14 23:25:18,638] multiqc.modules.picard.picard [INFO ] Found 11 RnaSeqMetrics reports [2023-11-14 23:25:18,650] multiqc [DEBUG ] No samples found: vep [2023-11-14 23:25:18,679] multiqc [DEBUG ] No samples found: sentieon [2023-11-14 23:25:18,690] multiqc [DEBUG ] No samples found: prokka [2023-11-14 23:25:18,718] multiqc [DEBUG ] No samples found: qc3C [2023-11-14 23:25:18,749] multiqc [DEBUG ] No samples found: nanostat [2023-11-14 23:25:18,761] multiqc [DEBUG ] No samples found: samblaster [2023-11-14 23:25:18,831] multiqc.modules.samtools.samtools [INFO ] Found 33 flagstat reports [2023-11-14 23:25:18,848] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-14 23:25:18,855] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2023-11-14 23:25:18,862] multiqc [DEBUG ] No samples found: bamtools [2023-11-14 23:25:18,868] multiqc [DEBUG ] No samples found: jellyfish [2023-11-14 23:25:18,883] multiqc [DEBUG ] No samples found: vcftools [2023-11-14 23:25:18,891] multiqc [DEBUG ] No samples found: longranger [2023-11-14 23:25:18,913] multiqc [DEBUG ] No samples found: stacks [2023-11-14 23:25:18,920] multiqc [DEBUG ] No samples found: varscan2 [2023-11-14 23:25:18,942] multiqc [DEBUG ] No samples found: snippy [2023-11-14 23:25:18,995] multiqc [DEBUG ] No samples found: bbmap [2023-11-14 23:25:19,017] multiqc [DEBUG ] No samples found: bismark [2023-11-14 23:25:19,038] multiqc [DEBUG ] No samples found: biscuit [2023-11-14 23:25:19,049] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-14 23:25:19,068] multiqc [DEBUG ] No samples found: hicup [2023-11-14 23:25:19,095] multiqc [DEBUG ] No samples found: hicpro [2023-11-14 23:25:19,106] multiqc [DEBUG ] No samples found: salmon [2023-11-14 23:25:19,115] multiqc [DEBUG ] No samples found: kallisto [2023-11-14 23:25:19,139] multiqc [DEBUG ] No samples found: slamdunk [2023-11-14 23:25:19,174] multiqc.modules.star.star [INFO ] Found 11 reports [2023-11-14 23:25:19,183] multiqc [DEBUG ] No samples found: hisat2 [2023-11-14 23:25:19,206] multiqc [DEBUG ] No samples found: tophat [2023-11-14 23:25:19,230] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-14 23:25:19,246] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-14 23:25:19,266] multiqc [DEBUG ] No samples found: snpsplit [2023-11-14 23:25:19,286] multiqc [DEBUG ] No samples found: odgi [2023-11-14 23:25:19,296] multiqc [DEBUG ] No samples found: pangolin [2023-11-14 23:25:19,305] multiqc [DEBUG ] No samples found: kat [2023-11-14 23:25:19,311] multiqc [DEBUG ] No samples found: leehom [2023-11-14 23:25:19,334] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-14 23:25:19,346] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-14 23:25:19,371] multiqc [DEBUG ] No samples found: cutadapt [2023-11-14 23:25:19,381] multiqc [DEBUG ] No samples found: flexbar [2023-11-14 23:25:19,390] multiqc [DEBUG ] No samples found: kaiju [2023-11-14 23:25:19,397] multiqc [DEBUG ] No samples found: kraken [2023-11-14 23:25:19,404] multiqc [DEBUG ] No samples found: malt [2023-11-14 23:25:19,431] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-14 23:25:19,441] multiqc [DEBUG ] No samples found: sickle [2023-11-14 23:25:19,467] multiqc [DEBUG ] No samples found: skewer [2023-11-14 23:25:19,477] multiqc [DEBUG ] No samples found: sortmerna [2023-11-14 23:25:19,485] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-14 23:25:19,508] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-14 23:25:19,529] multiqc [DEBUG ] No samples found: afterqc [2023-11-14 23:25:19,555] multiqc [DEBUG ] No samples found: fastp [2023-11-14 23:25:20,008] multiqc.modules.fastqc.fastqc [INFO ] Found 11 reports [2023-11-14 23:25:20,145] multiqc [DEBUG ] No samples found: pychopper [2023-11-14 23:25:20,166] multiqc [DEBUG ] No samples found: pycoqc [2023-11-14 23:25:20,176] multiqc [DEBUG ] No samples found: minionqc [2023-11-14 23:25:20,201] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-14 23:25:20,218] multiqc [DEBUG ] No samples found: clusterflow [2023-11-14 23:25:20,243] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-14 23:25:20,254] multiqc [DEBUG ] No samples found: bclconvert [2023-11-14 23:25:20,287] multiqc [DEBUG ] No samples found: interop [2023-11-14 23:25:20,304] multiqc [DEBUG ] No samples found: ivar [2023-11-14 23:25:20,330] multiqc [DEBUG ] No samples found: flash [2023-11-14 23:25:20,343] multiqc [DEBUG ] No samples found: seqyclean [2023-11-14 23:25:20,353] multiqc [DEBUG ] No samples found: optitype [2023-11-14 23:25:20,389] multiqc [INFO ] Compressing plot data [2023-11-14 23:25:20,575] multiqc [INFO ] Report : multiqc_report.html [2023-11-14 23:25:20,575] multiqc [INFO ] Data : multiqc_data [2023-11-14 23:25:20,575] multiqc [DEBUG ] Moving data file from '/scratch/tmpx3xy1_dg/multiqc_data' to '/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/14_final_summary/multiqc_report/multiqc_data' [2023-11-14 23:25:21,048] multiqc [INFO ] MultiQC complete