Module	Section	Sample Name	Source
RSeQC	infer_experiment	GSE147609_M8_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/Read_Strandness/GSE147609_M8_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M1_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/Read_Strandness/GSE147609_M1_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M7_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/Read_Strandness/GSE147609_M7_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M9_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/Read_Strandness/GSE147609_M9_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M4_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/Read_Strandness/GSE147609_M4_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M2_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/Read_Strandness/GSE147609_M2_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M5_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/Read_Strandness/GSE147609_M5_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M3_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/Read_Strandness/GSE147609_M3_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M11_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/Read_Strandness/GSE147609_M11_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M6_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/Read_Strandness/GSE147609_M6_Read_Strandness.txt
RSeQC	infer_experiment	GSE147609_M10_Read_Strandness	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/Read_Strandness/GSE147609_M10_Read_Strandness.txt
featureCounts	all_sections	GSE147609_M8_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M8_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M1_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M1_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M7_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M7_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M9_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M9_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M4_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M4_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M2_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M2_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M5_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M5_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M3_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M3_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M11_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M11_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M6_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M6_featureCounts.out.summary
featureCounts	all_sections	GSE147609_M10_sorted	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE147609_M10_featureCounts.out.summary
Picard	RnaSeqMetrics	GSE147609_M8_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/CollectRnaSeqMetrics/GSE147609_M8_metrics
Picard	RnaSeqMetrics	GSE147609_M1_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/CollectRnaSeqMetrics/GSE147609_M1_metrics
Picard	RnaSeqMetrics	GSE147609_M7_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/CollectRnaSeqMetrics/GSE147609_M7_metrics
Picard	RnaSeqMetrics	GSE147609_M9_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/CollectRnaSeqMetrics/GSE147609_M9_metrics
Picard	RnaSeqMetrics	GSE147609_M4_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/CollectRnaSeqMetrics/GSE147609_M4_metrics
Picard	RnaSeqMetrics	GSE147609_M2_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/CollectRnaSeqMetrics/GSE147609_M2_metrics
Picard	RnaSeqMetrics	GSE147609_M5_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/CollectRnaSeqMetrics/GSE147609_M5_metrics
Picard	RnaSeqMetrics	GSE147609_M3_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/CollectRnaSeqMetrics/GSE147609_M3_metrics
Picard	RnaSeqMetrics	GSE147609_M11_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/CollectRnaSeqMetrics/GSE147609_M11_metrics
Picard	RnaSeqMetrics	GSE147609_M6_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/CollectRnaSeqMetrics/GSE147609_M6_metrics
Picard	RnaSeqMetrics	GSE147609_M10_primary_unique	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/CollectRnaSeqMetrics/GSE147609_M10_metrics
Samtools	flagstat	GSE147609_M8_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/aligner/GSE147609_M8_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M8_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/aligner/GSE147609_M8_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M8_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/aligner/GSE147609_M8_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M1_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/aligner/GSE147609_M1_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M1_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/aligner/GSE147609_M1_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M1_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/aligner/GSE147609_M1_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M7_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/aligner/GSE147609_M7_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M7_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/aligner/GSE147609_M7_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M7_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/aligner/GSE147609_M7_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M9_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/aligner/GSE147609_M9_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M9_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/aligner/GSE147609_M9_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M9_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/aligner/GSE147609_M9_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M4_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/aligner/GSE147609_M4_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M4_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/aligner/GSE147609_M4_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M4_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/aligner/GSE147609_M4_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M2_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/aligner/GSE147609_M2_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M2_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/aligner/GSE147609_M2_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M2_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/aligner/GSE147609_M2_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M5_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/aligner/GSE147609_M5_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M5_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/aligner/GSE147609_M5_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M5_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/aligner/GSE147609_M5_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M3_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/aligner/GSE147609_M3_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M3_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/aligner/GSE147609_M3_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M3_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/aligner/GSE147609_M3_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M11_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/aligner/GSE147609_M11_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M11_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/aligner/GSE147609_M11_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M11_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/aligner/GSE147609_M11_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M6_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/aligner/GSE147609_M6_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M6_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/aligner/GSE147609_M6_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M6_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/aligner/GSE147609_M6_statistics_for_primary_reads.txt
Samtools	flagstat	GSE147609_M10_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE147609_M10_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE147609_M10_statistics_for_primary_reads	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_statistics_for_primary_reads.txt
STAR	SummaryLog	GSE147609_M8_GSE147609_M8	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/aligner/GSE147609_M8_GSE147609_M8_Log.final.out
STAR	SummaryLog	GSE147609_M1_GSE147609_M1	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/aligner/GSE147609_M1_GSE147609_M1_Log.final.out
STAR	SummaryLog	GSE147609_M7_GSE147609_M7	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/aligner/GSE147609_M7_GSE147609_M7_Log.final.out
STAR	SummaryLog	GSE147609_M9_GSE147609_M9	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/aligner/GSE147609_M9_GSE147609_M9_Log.final.out
STAR	SummaryLog	GSE147609_M4_GSE147609_M4	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/aligner/GSE147609_M4_GSE147609_M4_Log.final.out
STAR	SummaryLog	GSE147609_M2_GSE147609_M2	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/aligner/GSE147609_M2_GSE147609_M2_Log.final.out
STAR	SummaryLog	GSE147609_M5_GSE147609_M5	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/aligner/GSE147609_M5_GSE147609_M5_Log.final.out
STAR	SummaryLog	GSE147609_M3_GSE147609_M3	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/aligner/GSE147609_M3_GSE147609_M3_Log.final.out
STAR	SummaryLog	GSE147609_M11_GSE147609_M11	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/aligner/GSE147609_M11_GSE147609_M11_Log.final.out
STAR	SummaryLog	GSE147609_M6_GSE147609_M6	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M6/aligner/GSE147609_M6_GSE147609_M6_Log.final.out
STAR	SummaryLog	GSE147609_M10_GSE147609_M10	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_GSE147609_M10_Log.final.out
FastQC	all_sections	GSM4435402_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M1_FASTQC/GSM4435402_pass_fastqc.zip
FastQC	all_sections	GSM4435409_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M8_FASTQC/GSM4435409_pass_fastqc.zip
FastQC	all_sections	GSM4435411_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M10_FASTQC/GSM4435411_pass_fastqc.zip
FastQC	all_sections	GSM4435406_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M5_FASTQC/GSM4435406_pass_fastqc.zip
FastQC	all_sections	GSM4435412_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M11_FASTQC/GSM4435412_pass_fastqc.zip
FastQC	all_sections	GSM4435408_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M7_FASTQC/GSM4435408_pass_fastqc.zip
FastQC	all_sections	GSM4435403_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M2_FASTQC/GSM4435403_pass_fastqc.zip
FastQC	all_sections	GSM4435405_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M4_FASTQC/GSM4435405_pass_fastqc.zip
FastQC	all_sections	GSM4435410_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M9_FASTQC/GSM4435410_pass_fastqc.zip
FastQC	all_sections	GSM4435407_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M6_FASTQC/GSM4435407_pass_fastqc.zip
FastQC	all_sections	GSM4435404_pass	/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M3_FASTQC/GSM4435404_pass_fastqc.zip